QTRT1

General Information

Gene Name       : QTRT1
Gene ID             : ENSG00000213339.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: QTRT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878QTRT1ENSG00000213339.82.559.676.11ENCSR000AEF
HepG2QTRT1ENSG00000213339.862.1110.5736.34ENCSR985KAT
K562QTRT1ENSG00000213339.831.7913.0122.40ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for QTRT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • QTRT1 RNA is bound by 15 proteins.  







eCLIP assay for QTRT1 is not avaliable on ENCORE database.





15 proteins are bound to QTRT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191082302910823138+3'-UTR,intron-Distal,intron-Proximal3.065715.18414K562PRPF8
chr191081798410818055+3'-UTR,CDS4.7594517.29219HepG2PPIG
chr191082396410824026+3'-UTR,intron-Proximal3.763383.01994HepG2GTF2F1
chr191082315310823234+3'-UTR,CDS,intron-Proximal3.768169.39605HepG2PRPF4
chr191082298610823135+3'-UTR,intron-Distal,intron-Proximal3.567489.96082HepG2PRPF4
chr191082379610823819+3'-UTR,CDS,intron-Proximal3.627124.41267HepG2PPIG
chr191081826210818336+3'-UTR,CDS,intron-Proximal4.3220613.85817HepG2PRPF8
chr191082297310823042+3'-UTR,CDS,intron-Proximal4.792564.86944K562AQR
chr191082289310822955+3'-UTR,CDS3.8248012.47924HepG2PPIG
chr191082301610823095+3'-UTR,intron-Distal,intron-Proximal5.531735.34688K562DDX24
chr191082298210823138+3'-UTR,intron-Distal,intron-Proximal3.657398.34118K562RBFOX2
chr191082301310823093+3'-UTR,intron-Distal,intron-Proximal4.416374.42691HepG2GTF2F1
chr191081817510818182+3'-UTR,CDS,intron-Proximal3.062483.22545HepG2PPIG
chr191082302910823152+3'-UTR,intron-Distal,intron-Proximal3.963236.96127HepG2ZC3H11A
chr191082298610823135+3'-UTR,intron-Distal,intron-Proximal4.4095124.45790HepG2RBFOX2
chr191082320710823275+3'-UTR,CDS,intron-Proximal4.058823.19682HepG2PABPN1
chr191082363010823633+3'-UTR,CDS3.606213.59112HepG2PPIG
chr191082313810823230+3'-UTR,CDS,intron-Proximal4.321334.14162K562RBFOX2
chr191081803810818087+3'-UTR,CDS,intron-Proximal3.074294.79866HepG2PRPF8
chr191082297410823142+3'-UTR,CDS,intron-Distal,intron-Proximal3.8411112.30399HepG2LSM11
chr191081823110818286+3'-UTR,CDS3.355414.27261HepG2GRWD1
chr191082350010823542+3'-UTR,CDS4.273938.34074HepG2PPIG
chr191082283710822893+3'-UTR,CDS3.7005111.77700HepG2PPIG
chr191082394810824017+3'-UTR,intron-Proximal4.239447.74383HepG2PCBP2
chr191082314510823239+3'-UTR,CDS,intron-Proximal3.158643.13705K562BUD13
chr191082298310823120+3'-UTR,intron-Distal,intron-Proximal3.8176215.34816HepG2PPIG
chr191082315110823261+3'-UTR,CDS,intron-Proximal3.512736.40795K562PRPF8
chr191082362810823710+3'-UTR,CDS,intron-Proximal4.891826.66265HepG2PABPN1
chr191082315110823228+3'-UTR,intron-Proximal3.3156513.79580HepG2PRPF8
chr191081824010818291+3'-UTR,CDS3.682648.34074HepG2PPIG
chr191082298410823021+3'-UTR,intron-Proximal3.493535.13777HepG2PRPF8
chr191081217910812268+CDS5.375948.61209HepG2NCBP2
chr191081279810812855+CDS,intron-Proximal3.186455.78238HepG2PPIG
chr191081290810812919+CDS3.715894.13746HepG2PPIG
chr191082337510823434+intron-Proximal3.460174.67783HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for QTRT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for QTRT1 is not available on ENCORE database.

  • 86 RBPs can affect the levels of QTRT1.  








The Knockdown/knockout RNA-Seq assay for QTRT1 is not available on ENCORE database.





86 RBPs can affect the gene expression of QTRT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
QTRT1ENSG00000213339.4618.06030414.174900.577402.830501.87860HepG2ABCF1
QTRT1ENSG00000213339.4283.99570477.44770-0.749508.657707.70540HepG2ACO1
QTRT1ENSG00000213339.4611.72850300.880501.023606.509305.04120HepG2BCCIP
QTRT1ENSG00000213339.4341.73640216.209600.660403.910203.21160HepG2BOP1
QTRT1ENSG00000213339.4238.69280163.279200.547702.747201.73290HepG2YBX3
QTRT1ENSG00000213339.4507.28280375.556600.433703.539802.71880HepG2DAZAP1
QTRT1ENSG00000213339.4609.05990441.547500.463905.083003.99940HepG2DDX19B
QTRT1ENSG00000213339.4158.57960252.31250-0.670002.415501.56730HepG2DDX24
QTRT1ENSG00000213339.4240.53500160.310500.585303.147402.40170HepG2DNAJC21
QTRT1ENSG00000213339.4294.87610158.920300.891708.418907.35800HepG2DNAJC2
QTRT1ENSG00000213339.4120.78820224.95840-0.897203.247802.55880HepG2GPKOW
QTRT1ENSG00000213339.4294.54200194.990700.595002.462701.41200HepG2GRSF1
QTRT1ENSG00000213339.4326.94540178.236100.875202.705901.35490HepG2HNRNPA0
QTRT1ENSG00000213339.4578.21760342.120400.757009.915708.71570HepG2HNRNPL
QTRT1ENSG00000213339.4321.17150178.842000.844602.231101.68130HepG2HNRNPU
QTRT1ENSG00000213339.4261.44730182.679700.517103.258702.46930HepG2ILF2
QTRT1ENSG00000213339.4885.84870410.155101.110803.623102.90970HepG2MATR3
QTRT1ENSG00000213339.4717.78630372.398200.946607.200505.98150HepG2NOL12
QTRT1ENSG00000213339.4629.49120429.411500.551705.817704.98930HepG2PCBP1
QTRT1ENSG00000213339.4319.38440159.511301.001506.257405.18250HepG2PPIL4
QTRT1ENSG00000213339.4121.85300228.10070-0.904504.977203.92800HepG2PRPF8
QTRT1ENSG00000213339.4650.41740377.330000.7854012.0137010.96110HepG2PUM1
QTRT1ENSG00000213339.4383.89280486.30410-0.341202.382701.79980HepG2PUS1
QTRT1ENSG00000213339.4374.82480473.22810-0.336301.907501.37380HepG2QKI
QTRT1ENSG00000213339.4553.38820689.08740-0.316401.769701.33140HepG2RBM22
QTRT1ENSG00000213339.4307.18270429.47810-0.483503.038002.33520HepG2RBM25
QTRT1ENSG00000213339.4410.73220288.348100.510302.179501.30900HepG2RBM27
QTRT1ENSG00000213339.4297.80620202.265400.558002.869502.24490HepG2RPS19
QTRT1ENSG00000213339.4459.90990265.902000.790405.242204.16130HepG2RPS2
QTRT1ENSG00000213339.4368.24530211.623400.799103.885802.93810HepG2RPS3A
QTRT1ENSG00000213339.4478.95750271.462000.819004.202102.86400HepG2RPS5
QTRT1ENSG00000213339.4361.79670159.261701.1837014.3562013.05910HepG2SAFB2
QTRT1ENSG00000213339.4327.96130199.276500.718703.805502.27860HepG2SART3
QTRT1ENSG00000213339.4251.17140430.37800-0.776904.437903.57320HepG2SF3A3
QTRT1ENSG00000213339.4543.50730340.803900.673307.175706.12980HepG2SLBP
QTRT1ENSG00000213339.4387.00850227.425600.766902.430601.53610HepG2SMNDC1
QTRT1ENSG00000213339.4459.26680778.26300-0.760905.888405.23360HepG2SRFBP1
QTRT1ENSG00000213339.4296.67970474.83150-0.678506.227405.58800HepG2SRSF1
QTRT1ENSG00000213339.4533.58970350.954000.604305.898605.03450HepG2SRSF5
QTRT1ENSG00000213339.4250.91790386.29540-0.622505.243704.52690HepG2SRSF9
QTRT1ENSG00000213339.4538.10020675.65390-0.328401.753701.32240HepG2SSB
QTRT1ENSG00000213339.4709.10560399.150100.8290012.7769011.60480HepG2SUCLG1
QTRT1ENSG00000213339.4162.62910294.47920-0.856605.094404.22150HepG2SUPV3L1
QTRT1ENSG00000213339.4286.45940426.78000-0.575204.346803.66820HepG2TAF15
QTRT1ENSG00000213339.4384.70480173.746701.146708.675007.87900HepG2TIAL1
QTRT1ENSG00000213339.4436.78320175.333901.3167020.1434018.79820HepG2TRIM56
QTRT1ENSG00000213339.4552.27470347.250400.669302.638101.78620HepG2TUFM
QTRT1ENSG00000213339.4166.24670357.59040-1.105004.787303.97450HepG2U2AF1
QTRT1ENSG00000213339.4382.16040173.933201.135509.677508.26090HepG2UCHL5
QTRT1ENSG00000213339.4331.01920189.559400.804204.526703.11040HepG2XPO5
QTRT1ENSG00000213339.4502.45870289.883600.793402.618701.91340HepG2XRN2
QTRT1ENSG00000213339.4168.53910266.44640-0.660804.223903.42150HepG2ZC3H8
QTRT1ENSG00000213339.4336.94420419.77420-0.317102.025901.53860HepG2ZNF622
QTRT1ENSG00000213339.4664.26230418.739600.665605.835904.05390K562ABCF1
QTRT1ENSG00000213339.4435.35280281.737100.627705.194804.45740K562AGGF1
QTRT1ENSG00000213339.4407.67520304.164400.422502.999801.42710K562AKAP1
QTRT1ENSG00000213339.4523.46190293.156600.836305.547704.60600K562AKAP8L
QTRT1ENSG00000213339.41047.61060769.072200.445803.458802.06200K562APOBEC3C
QTRT1ENSG00000213339.4444.85890842.72220-0.9217010.163609.14690K562AQR
QTRT1ENSG00000213339.4402.90950307.585000.389402.276801.45560K562ATP5C1
QTRT1ENSG00000213339.4321.47880468.10280-0.542103.864102.07050K562CEBPZ
QTRT1ENSG00000213339.4720.50640457.743200.654407.917706.02090K562CPEB4
QTRT1ENSG00000213339.4867.927501071.81980-0.304402.561801.62360K562CELF1
QTRT1ENSG00000213339.4542.29730333.921400.699503.241201.79250K562DDX27
QTRT1ENSG00000213339.4742.75260473.537100.649308.564307.49850K562DDX47
QTRT1ENSG00000213339.4368.36860243.703000.595902.311701.40130K562EIF3A
QTRT1ENSG00000213339.4362.68480127.298201.5104011.291209.66430K562EIF3G
QTRT1ENSG00000213339.41177.39780871.606400.433804.856703.62900K562EIF4G2
QTRT1ENSG00000213339.492.21900179.96890-0.964604.639103.52850K562FMR1
QTRT1ENSG00000213339.4471.90970334.895600.494703.895403.19570K562FXR1
QTRT1ENSG00000213339.422.5648077.67870-1.783405.576304.49190K562G3BP2
QTRT1ENSG00000213339.4174.59140312.75480-0.841005.704704.87850K562HNRNPC
QTRT1ENSG00000213339.4196.33510303.09140-0.626403.643301.99870K562LARP7
QTRT1ENSG00000213339.4303.77340200.841000.596803.095102.20460K562MAGOH
QTRT1ENSG00000213339.4462.35840200.397901.206009.874208.02470K562MATR3
QTRT1ENSG00000213339.4225.72860321.54540-0.510402.754001.52910K562NCBP2
QTRT1ENSG00000213339.4343.52450195.147200.815804.686503.84440K562PTBP1
QTRT1ENSG00000213339.4809.936201011.61600-0.320802.529401.51040K562PUM1
QTRT1ENSG00000213339.4409.06180290.756800.492402.822102.27450K562PUS1
QTRT1ENSG00000213339.4175.9444080.668101.125006.879505.49500K562SF3B4
QTRT1ENSG00000213339.4142.69570255.54680-0.840602.735501.51540K562SNRNP200
QTRT1ENSG00000213339.4271.18900180.767500.585102.388101.42320K562SRSF5
QTRT1ENSG00000213339.4356.00880480.05470-0.431303.010901.78810K562SRSF7
QTRT1ENSG00000213339.4144.54680313.58190-1.117303.562801.39350K562SUGP2
QTRT1ENSG00000213339.4286.14190193.587400.563602.738202.03360K562TARDBP
QTRT1ENSG00000213339.4309.74230186.751800.729803.535202.59330K562TIA1
QTRT1ENSG00000213339.4331.81550183.393700.855302.530601.49580K562TRA2A
QTRT1ENSG00000213339.4818.810901072.29010-0.389103.608801.98970K562UBE2L3
QTRT1ENSG00000213339.4418.82000558.25900-0.414603.525602.72180K562UPF1
QTRT1ENSG00000213339.4317.14970477.68370-0.590904.637403.48940K562WDR3
QTRT1ENSG00000213339.4157.46460300.79440-0.933803.318301.53260K562YTHDC2
QTRT1ENSG00000213339.4701.70920949.44450-0.436203.791002.75050K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for QTRT1 is not available on ENCORE database.





28 RBPs can affect the splicing of QTRT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEQTRT1ENSG00000213339.4chr19+108181751081829110817977108180561082283610823304-0.120000.000380.00539excludedK562AQR
SEQTRT1ENSG00000213339.4chr19+108127911081293010812625108126941081797710818056-0.070000.006370.05681excludedK562AQR
SEQTRT1ENSG00000213339.4chr19+108181751081829110817977108180561082283610823304-0.161000.001320.06252excludedK562EFTUD2
SEQTRT1ENSG00000213339.4chr19+1081738510817501108127911081293010817977108180560.438000.000000.00000includedK562HNRNPC
SEQTRT1ENSG00000213339.4chr19+108232281082330410822836108229751082343310823543-0.078000.001420.02575excludedK562HNRNPC
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.239000.000080.00637includedHepG2BCCIP
RIQTRT1ENSG00000213339.4chr19+1081262510812930108126251081269410812791108129300.237000.001080.02407includedHepG2PCBP2
RIQTRT1ENSG00000213339.4chr19+1081262510812930108126251081269410812791108129300.343000.001410.01775includedHepG2SF3A3
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.305000.000010.00069includedK562HNRNPC
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.151000.000420.03327includedK562EIF4G2
RIQTRT1ENSG00000213339.4chr19+1081262510812930108126251081269410812791108129300.099000.000330.02744includedK562EIF4G2
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.205000.002300.05094includedHepG2UCHL5
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.302000.002440.03086includedHepG2PRPF8
RIQTRT1ENSG00000213339.4chr19+108228361082330410822836108229751082322810823304-0.174000.002070.08090excludedK562NCBP2
RIQTRT1ENSG00000213339.4chr19+108228361082330410822836108229751082322810823304-0.225000.000900.03529excludedK562HNRNPUL1
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.329000.000110.01988includedK562HNRNPK
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.285000.000260.00486includedK562PRPF8
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.281000.000000.00017includedHepG2MATR3
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.373000.002380.05083includedHepG2FTO
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.257000.000040.00120includedHepG2PCBP1
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.176000.002670.05397includedHepG2SRSF1
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.253000.000200.00351includedHepG2QKI
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.283000.000300.00948includedK562RBM22
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.288000.000010.00022includedHepG2TAF15
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.311000.000370.00500includedHepG2U2AF1
RIQTRT1ENSG00000213339.4chr19+108126251081293010812625108126941081279110812930-0.150000.000010.00658excludedK562DDX21
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.170000.005230.06879includedHepG2G3BP1
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.322000.000010.00033includedHepG2TIAL1
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.261000.000050.00076includedHepG2SF3B4
RIQTRT1ENSG00000213339.4chr19+1081262510812930108126251081269410812791108129300.117000.003920.02885includedHepG2SF3B4
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.246000.000120.00357includedHepG2FUBP3
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.281000.000010.00015includedHepG2RBM22
RIQTRT1ENSG00000213339.4chr19+1081262510812930108126251081269410812791108129300.269000.000000.00000includedHepG2RBM22
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.178000.003000.03297includedHepG2HNRNPK
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.236000.000420.01355includedHepG2PTBP1
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.323000.000010.00026includedK562EFTUD2
RIQTRT1ENSG00000213339.4chr19+1081262510812930108126251081269410812791108129300.144000.006700.05839includedK562EFTUD2
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.164000.002930.01785includedK562AQR
RIQTRT1ENSG00000213339.4chr19+1081262510812930108126251081269410812791108129300.183000.000000.00000includedK562AQR
RIQTRT1ENSG00000213339.4chr19+1082283610823304108228361082297510823228108233040.208000.000760.03207includedHepG2XRN2
RIQTRT1ENSG00000213339.4chr19+1081262510812930108126251081269410812791108129300.138000.001720.02852includedK562FXR1
MXEQTRT1ENSG00000213339.4chr19+10822836108229751082322810823304108179771081805610823433108235430.142000.000500.004961includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for QTRT1 is not avaliable on ENCORE database.