PRICKLE4

General Information

Gene Name       : PRICKLE4
Gene ID             : ENSG00000278224.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PRICKLE4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRICKLE4ENSG00000278224.60.000.000.00ENCSR000AEF
HepG2PRICKLE4ENSG00000278224.60.561.250.91ENCSR985KAT
K562PRICKLE4ENSG00000278224.60.000.020.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRICKLE4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRICKLE4 RNA is bound by 40 proteins.  







eCLIP assay for PRICKLE4 is not avaliable on ENCORE database.





40 proteins are bound to PRICKLE4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr64175308741753280+3'-UTR,CDS,intron-Proximal5.3513010.87363HepG2PABPN1
chr64175323441753276+3'-UTR,CDS3.150786.27819HepG2PPIG
chr64175549541755534+3'-UTR,CDS3.0950838.66611K562DDX3X
chr64175543541755481+3'-UTR,CDS4.019155.39661K562GEMIN5
chr64175704041757075+3'-UTR,CDS,intron-Proximal5.009516.10458K562RPS3
chr64175738341757493+3'-UTR4.347909.58311HepG2PCBP1
chr64175726641757324+3'-UTR,intron-Proximal3.461518.74912HepG2BUD13
chr64175753041757583+3'-UTR7.31306400.00000K562PUM2
chr64175743641757485+3'-UTR4.5522942.56759K562PCBP1
chr64175307441753185+3'-UTR,CDS,intron-Proximal4.362495.95105HepG2EIF3H
chr64175751341757559+3'-UTR4.6000120.86265HepG2LARP4
chr64175704841757073+3'-UTR,CDS4.037155.33915HepG2SUB1
chr64175698241757057+3'-UTR,CDS3.367163.77473HepG2PABPN1
chr64175703441757051+3'-UTR,CDS3.257587.42890K562PABPC4
chr64175755841757580+3'-UTR3.8994654.36401K562PABPC4
chr64175752541757530+3'-UTR7.78009400.00000K562PUM2
chr64175702941757070+3'-UTR,CDS3.5372512.95841HepG2LARP4
chr64175477341754815+3'-UTR,CDS4.353075.03266HepG2LSM11
chr64175707241757083+3'-UTR,intron-Proximal4.616076.48405K562AQR
chr64175737541757397+3'-UTR4.3751519.66817K562IGF2BP1
chr64175740041757440+3'-UTR3.955808.63173HepG2PCBP2
chr64175700541757020+3'-UTR,CDS4.4253413.38715HepG2LARP4
chr64175314741753198+3'-UTR,CDS3.536714.00411HepG2LSM11
chr64175751941757597+3'-UTR3.559997.91102HepG2LSM11
chr64175744541757491+3'-UTR3.4727916.10512HepG2LARP4
chr64175749441757513+3'-UTR3.900009.94881HepG2LARP4
chr64175758541757603+3'-UTR6.06839400.00000K562PABPC4
chr64175744041757506+3'-UTR3.6983620.48924HepG2PCBP2
chr64175730341757332+3'-UTR,intron-Proximal3.466008.48185K562PABPC4
chr64175746841757516+3'-UTR3.7119724.02958K562TIA1
chr64175733641757375+3'-UTR4.2762625.92493K562IGF2BP1
chr64175751041757601+3'-UTR3.479653.68605HepG2AKAP1
chr64175548341755543+3'-UTR,CDS3.3091326.07660K562YBX3
chr64175749441757512+3'-UTR5.88970400.00000K562PUM2
chr64175729241757375+3'-UTR,intron-Proximal3.6519814.84058HepG2LARP4
chr64175753341757558+3'-UTR3.0496117.33661K562PABPC4
chr64175386741753903+3'-UTR,CDS3.327744.77136HepG2PPIG
chr64175730241757331+3'-UTR,intron-Proximal3.258676.74488K562APOBEC3C
chr64175704341757070+3'-UTR,CDS4.219036.74349HepG2DDX55
chr64175740941757436+3'-UTR5.9114623.30729K562PCBP1
chr64175729041757299+3'-UTR,intron-Proximal3.3611610.89350K562YBX3
chr64175751141757590+3'-UTR4.1894225.99827HepG2DDX55
chr64175758041757585+3'-UTR5.4327085.17316K562PABPC4
chr64175755941757601+3'-UTR4.1769015.85755HepG2LARP4
chr64175452141754594+3'-UTR,CDS3.321863.28107HepG2PABPN1
chr64175734941757371+3'-UTR3.0303311.11078K562YBX3
chr64175744941757468+3'-UTR3.3321217.65463K562TIA1
chr64175751841757598+3'-UTR3.7385315.72370K562APOBEC3C
chr64175697141757075+3'-UTR,CDS,intron-Proximal3.4192511.20457HepG2LSM11
chr64175730041757385+3'-UTR,intron-Proximal3.249274.65018HepG2PCBP2
chr64175733241757352+3'-UTR3.9098524.50737K562PABPC4
chr64175307841753172+3'-UTR,CDS3.512318.16183HepG2BCLAF1
chr64175703541757063+3'-UTR,CDS3.995383.39686HepG2G3BP1
chr64175750641757584+3'-UTR3.6087811.57088K562PUM1
chr64175393141754055+3'-UTR,CDS3.854644.87412HepG2EIF3H
chr64175698341757040+3'-UTR,CDS4.209785.17248K562RPS3
chr64175542141755495+3'-UTR,5'-UTR,CDS3.4883157.35554K562DDX3X
chr64175542941755476+3'-UTR,5'-UTR,CDS3.1108617.24066K562YBX3
chr64175751441757604+3'-UTR3.045457.23917HepG2ZC3H11A
chr64175743641757511+3'-UTR3.4082910.04084HepG2DDX55
chr64175547941755569+3'-UTR,CDS,intron-Proximal4.480818.00438HepG2DDX55
chr64175548141755563+3'-UTR,CDS6.6454523.45859K562RPS3
chr64175742441757436+3'-UTR3.804514.36276HepG2LARP4
chr64175698141757043+3'-UTR,CDS4.0318312.65480HepG2DDX55
chr64175543141755481+3'-UTR,5'-UTR,CDS4.8080821.28743K562RPS3
chr64175751241757524+3'-UTR6.81941400.00000K562PUM2
chr64175735241757381+3'-UTR3.5299521.21870K562PABPC4
chr64175307441753171+3'-UTR,CDS,intron-Proximal3.5096712.87034HepG2PPIG
chr64175752541757575+3'-UTR3.1321018.93889K562GEMIN5
chr64175699141757028+3'-UTR,CDS3.1120615.08503K562PABPC4
chr64175752141757601+3'-UTR3.899967.75227HepG2DDX6
chr64175727341757308+3'-UTR,intron-Proximal3.585045.46476K562AQR
chr64175750741757603+3'-UTR6.4635334.50790HepG2SUB1
chr64174848641748524+5'-UTR3.703494.60998HepG2PCBP2
chr64175185641751903+5'-UTR,CDS,intron-Proximal5.247108.85296HepG2PPIG
chr64174897041749083+5'-UTR,intron-Distal,intron-Proximal3.788435.75313HepG2NKRF
chr64174845941748558+5'-UTR5.4756813.35443HepG2PRPF4
chr64174809141748171+5'-UTR3.3236411.50483HepG2NKRF
chr64174921141749259+5'-UTR,intron-Proximal3.256137.83989HepG2PPIG
chr64174809541748179+5'-UTR4.7606014.77806HepG2PRPF4
chr64175267141752767+5'-UTR,CDS,intron-Proximal3.7555913.37061HepG2PPIG
chr64174916841749211+5'-UTR3.575517.09278HepG2PPIG
chr64174913241749181+5'-UTR3.142614.18806HepG2U2AF2
chr64175181441751894+5'-UTR,CDS,intron-Proximal5.5147310.65252HepG2SF3A3
chr64175169541751752+5'-UTR,intron-Distal3.332213.08145HepG2HLTF
chr64174809741748171+5'-UTR3.7184110.22163HepG2GTF2F1
chr64175185041751898+5'-UTR,CDS,intron-Proximal4.4278419.10356HepG2U2AF2
chr64174810241748213+5'-UTR4.4211410.50484HepG2DROSHA
chr64175192141751977+5'-UTR,CDS,intron-Proximal3.185156.47429HepG2PPIG
chr64174833941748381+5'-UTR3.249373.41847HepG2GTF2F1
chr64175184841751908+5'-UTR,CDS,intron-Proximal3.843655.51930HepG2U2AF1
chr64175120141751331+5'-UTR,CDS3.839843.92633HepG2UCHL5
chr64174846841748542+5'-UTR3.192975.60771HepG2FAM120A
chr64174847041748540+5'-UTR4.261397.76457HepG2GTF2F1
chr64175131541751382+CDS,intron-Proximal3.6526211.42300HepG2PRPF8
chr64175145541751525+CDS,intron-Distal,intron-Proximal3.5645011.42117HepG2U2AF2
chr64175127841751343+CDS3.130627.83839HepG2PPIG
chr64175126641751342+CDS3.512857.31809HepG2GRWD1
chr64175710241757193+intron-Distal,intron-Proximal4.876317.00634K562KHSRP
chr64175138241751447+intron-Distal,intron-Proximal4.2681712.25238HepG2RBM5
chr64174856441748572+intron-Proximal5.234827.63570K562AQR
chr64175708341757143+intron-Proximal6.1506711.56697K562AQR
chr64174857241748617+intron-Proximal4.677899.08030K562AQR
chr64175556341755604+intron-Proximal3.793266.04280HepG2PRPF8
chr64175556941755605+intron-Proximal4.973856.22530K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRICKLE4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRICKLE4 is not available on ENCORE database.

  • 84 RBPs can affect the levels of PRICKLE4.  








The Knockdown/knockout RNA-Seq assay for PRICKLE4 is not available on ENCORE database.





84 RBPs can affect the gene expression of PRICKLE4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRICKLE4ENSG00000124593.101154.65730834.041300.469203.302402.27620HepG2ABCF1
PRICKLE4ENSG00000124593.10618.05180869.93150-0.493206.608205.75060HepG2ACO1
PRICKLE4ENSG00000124593.10538.12300752.54660-0.483803.582401.99270HepG2ATP5C1
PRICKLE4ENSG00000124593.101004.87440508.103200.983709.707807.89560HepG2BCCIP
PRICKLE4ENSG00000124593.10357.25200540.95370-0.598604.993403.99340HepG2CALR
PRICKLE4ENSG00000124593.10553.42280869.69090-0.6521011.140109.98640HepG2CKAP4
PRICKLE4ENSG00000124593.10736.82390592.831200.313601.904401.32930HepG2DDX21
PRICKLE4ENSG00000124593.10444.23470580.35720-0.385602.461401.60400HepG2DDX24
PRICKLE4ENSG00000124593.10829.54210629.366100.398302.343901.76300HepG2DDX3X
PRICKLE4ENSG00000124593.10576.44970881.15010-0.612205.995304.13590HepG2DDX47
PRICKLE4ENSG00000124593.10434.99460601.15460-0.466703.135802.06620HepG2DDX5
PRICKLE4ENSG00000124593.10788.15780540.838500.543203.534602.84440HepG2DDX6
PRICKLE4ENSG00000124593.10541.88260832.27540-0.619108.421907.36700HepG2DKC1
PRICKLE4ENSG00000124593.10675.54860491.468600.458905.310204.45040HepG2DNAJC2
PRICKLE4ENSG00000124593.10506.22250710.71100-0.489503.329602.32570HepG2EEF2
PRICKLE4ENSG00000124593.10371.38560592.42530-0.673705.522803.95160HepG2EFTUD2
PRICKLE4ENSG00000124593.10475.36730632.64150-0.412302.946301.73640HepG2EIF2S2
PRICKLE4ENSG00000124593.101396.652801103.062300.340403.231902.59070HepG2ETF1
PRICKLE4ENSG00000124593.10628.02810850.03270-0.436703.756702.78360HepG2EWSR1
PRICKLE4ENSG00000124593.10633.20220480.622300.397702.692601.91670HepG2FUBP3
PRICKLE4ENSG00000124593.101270.65720579.693401.1321017.1756015.61620HepG2FXR1
PRICKLE4ENSG00000124593.101215.29090537.597801.1766016.9997015.41880HepG2G3BP1
PRICKLE4ENSG00000124593.10989.46310570.928700.793207.029205.59690HepG2G3BP2
PRICKLE4ENSG00000124593.10694.15170513.647600.434402.822501.91490HepG2GEMIN5
PRICKLE4ENSG00000124593.10663.45930500.592500.406302.755102.10960HepG2HNRNPA1
PRICKLE4ENSG00000124593.10742.40440556.818300.414902.838302.13670HepG2HNRNPC
PRICKLE4ENSG00000124593.10791.17790636.281600.314202.620201.92190HepG2HNRNPF
PRICKLE4ENSG00000124593.10618.00130854.79570-0.468005.811804.86540HepG2HNRNPL
PRICKLE4ENSG00000124593.10855.35580553.136800.628809.325808.26240HepG2HNRNPU
PRICKLE4ENSG00000124593.10443.76060565.01070-0.348503.016302.25380HepG2ILF2
PRICKLE4ENSG00000124593.10963.42020549.688800.809506.691905.05710HepG2KHSRP
PRICKLE4ENSG00000124593.10323.85330583.09550-0.848405.776904.89090HepG2MATR3
PRICKLE4ENSG00000124593.101274.73710596.792201.0948015.1352013.73460HepG2NCBP2
PRICKLE4ENSG00000124593.10809.62330584.125800.470905.355804.31430HepG2PRPF4
PRICKLE4ENSG00000124593.10161.61200385.29560-1.2534011.240009.76830HepG2PRPF8
PRICKLE4ENSG00000124593.10918.39890547.265000.7468012.2192011.23100HepG2PTBP1
PRICKLE4ENSG00000124593.10547.31500888.32850-0.698707.716606.78840HepG2PUF60
PRICKLE4ENSG00000124593.10685.31880943.04300-0.460506.159405.34750HepG2PUM1
PRICKLE4ENSG00000124593.10815.61460592.661800.460604.360303.60190HepG2QKI
PRICKLE4ENSG00000124593.10128.00040561.41080-2.132908.613807.41420HepG2RAVER1
PRICKLE4ENSG00000124593.10681.08930896.58560-0.396603.538502.57990HepG2RBM15
PRICKLE4ENSG00000124593.10739.83310921.94070-0.317502.829702.30710HepG2RBM22
PRICKLE4ENSG00000124593.10857.07910609.037900.492805.552604.82870HepG2NELFE
PRICKLE4ENSG00000124593.10890.86900567.264100.651109.524008.48180HepG2RECQL
PRICKLE4ENSG00000124593.10912.21400640.480500.510104.033703.07560HepG2RPS2
PRICKLE4ENSG00000124593.101167.18180690.240400.757806.296205.09480HepG2RPS3A
PRICKLE4ENSG00000124593.10170.34030381.12760-1.161909.145907.83230HepG2RRP9
PRICKLE4ENSG00000124593.10357.29070563.38350-0.657005.146903.87450HepG2SERBP1
PRICKLE4ENSG00000124593.10477.01700923.55430-0.953208.394607.16860HepG2SF3A3
PRICKLE4ENSG00000124593.10889.626601041.27090-0.227102.111201.65480HepG2SRFBP1
PRICKLE4ENSG00000124593.10229.04060594.69900-1.3766023.4300022.34750HepG2SRSF1
PRICKLE4ENSG00000124593.10482.99530625.13230-0.372203.202702.46020HepG2SRSF7
PRICKLE4ENSG00000124593.10367.97080483.83100-0.394902.924702.36040HepG2SRSF9
PRICKLE4ENSG00000124593.10921.94810534.576400.7862012.7754011.70390HepG2TAF15
PRICKLE4ENSG00000124593.10739.25660542.280800.446904.922004.21330HepG2TRIM56
PRICKLE4ENSG00000124593.10432.46260720.38420-0.736206.539205.58810HepG2U2AF1
PRICKLE4ENSG00000124593.10530.29730293.754200.852107.383006.13620HepG2UCHL5
PRICKLE4ENSG00000124593.10956.20490455.305101.070406.983505.34830HepG2UPF2
PRICKLE4ENSG00000124593.101197.76190841.870300.508607.334005.72180HepG2UTP18
PRICKLE4ENSG00000124593.10404.96890790.76200-0.9654016.9509015.65490HepG2UTP3
PRICKLE4ENSG00000124593.10832.98150489.543200.766706.593505.49040HepG2XRN2
PRICKLE4ENSG00000124593.10419.07010576.45510-0.460004.398803.58280HepG2ZC3H8
PRICKLE4ENSG00000124593.10534.21370900.79980-0.7538015.0901014.06760HepG2ZNF622
PRICKLE4ENSG00000124593.10473.82380309.158600.615903.876903.20590K562AQR
PRICKLE4ENSG00000124593.10358.49490248.267400.530003.194101.91470K562CCDC124
PRICKLE4ENSG00000124593.10191.70760128.862900.573002.204901.49750K562CPSF6
PRICKLE4ENSG00000124593.10451.14620268.149100.750507.637206.62780K562DDX47
PRICKLE4ENSG00000124593.10413.59230291.299100.505603.752102.93690K562EIF2S2
PRICKLE4ENSG00000124593.10151.5596097.920500.630102.272901.54680K562EIF3G
PRICKLE4ENSG00000124593.10502.22720383.210000.390102.850501.89790K562EIF4G2
PRICKLE4ENSG00000124593.10259.61970188.194700.464102.068501.33110K562FIP1L1
PRICKLE4ENSG00000124593.10265.99570131.138701.020206.624305.28010K562FMR1
PRICKLE4ENSG00000124593.10220.74540111.162100.989605.509004.16500K562FTO
PRICKLE4ENSG00000124593.10227.88460154.841500.557402.722902.12210K562FXR1
PRICKLE4ENSG00000124593.1039.2116076.66140-0.967202.406801.75400K562G3BP2
PRICKLE4ENSG00000124593.10260.54660123.022501.082504.661803.63550K562GPKOW
PRICKLE4ENSG00000124593.10263.44450142.260600.888905.358204.55290K562HNRNPC
PRICKLE4ENSG00000124593.10185.87770108.818400.772304.030703.01080K562MAGOH
PRICKLE4ENSG00000124593.10197.45980108.595400.862504.911203.64080K562MATR3
PRICKLE4ENSG00000124593.10199.47170120.087900.732003.281302.32680K562METAP2
PRICKLE4ENSG00000124593.10299.99940214.804800.481802.822502.00540K562MTPAP
PRICKLE4ENSG00000124593.10450.41120183.230901.297509.114506.87540K562PABPC1
PRICKLE4ENSG00000124593.10175.19290105.724900.728503.522502.78380K562PTBP1
PRICKLE4ENSG00000124593.10699.40270435.757000.682508.283806.59790K562PUM2
PRICKLE4ENSG00000124593.10197.35070101.369700.961005.584004.34080K562RBM22
PRICKLE4ENSG00000124593.10168.6863098.822200.771303.358601.78740K562RBM34
PRICKLE4ENSG00000124593.10204.00060106.677300.935205.273603.69890K562NELFE
PRICKLE4ENSG00000124593.10186.5278098.105100.926903.636402.46990K562RPS3
PRICKLE4ENSG00000124593.10209.20200104.894300.995905.804104.75480K562TARDBP
PRICKLE4ENSG00000124593.10162.87520101.183400.686702.847602.01570K562TIA1
PRICKLE4ENSG00000124593.10158.0301099.299200.670202.577401.52950K562TRA2A
PRICKLE4ENSG00000124593.10385.70530253.035400.608105.001304.06550K562UPF1
PRICKLE4ENSG00000124593.10363.72890225.171900.691706.342805.11180K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRICKLE4 is not available on ENCORE database.





4 RBPs can affect the splicing of PRICKLE4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RIPRICKLE4ENSG00000124593.10chr6+417511994175197641751199417513434175186841751976-0.217000.008180.07719excludedHepG2PRPF8
RIPRICKLE4ENSG00000124593.10chr6+417511994175197641751199417513434175147141751976-0.274000.001000.08097excludedHepG2DDX55
RIPRICKLE4ENSG00000124593.10chr6+417511994175197641751199417513434175147141751976-0.182000.011490.08816excludedHepG2U2AF1
RIPRICKLE4ENSG00000124593.10chr6+417511994175197641751199417513434175147141751976-0.157000.002150.03654excludedHepG2TIAL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRICKLE4 is not avaliable on ENCORE database.