POLDIP3

General Information

Gene Name : POLDIP3
Gene ID : ENSG00000100227.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: POLDIP3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	POLDIP3	ENSG00000100227.17	27.31	35.82	31.56	ENCSR000AEF
HepG2	POLDIP3	ENSG00000100227.17	49.53	54.40	51.97	ENCSR985KAT
K562	POLDIP3	ENSG00000100227.17	34.49	35.64	35.06	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for POLDIP3 is not avaliable on ENCORE database.

Proteins bound to RNA

POLDIP3 RNA is bound by 16 proteins.

CanvasJS.com

eCLIP assay for POLDIP3 is not avaliable on ENCORE database.

16 proteins are bound to POLDIP3 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	42979787	42979884	-	3'-UTR,intron-Distal	5.78350	26.17190	K562	UPF1
chr22	42981320	42981374	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.85131	26.00317	K562	UPF1
chr22	42981496	42981556	-	3'-UTR,intron-Distal	4.63055	25.33353	K562	UPF1
chr22	42980509	42980623	-	3'-UTR,intron-Distal	5.01560	25.12543	K562	UPF1
chr22	42981051	42981117	-	3'-UTR,intron-Distal	4.82413	23.55161	K562	UPF1
chr22	42995737	42995797	-	CDS,intron-Distal	6.22594	20.82694	K562	LIN28B
chr22	42980800	42980895	-	3'-UTR,intron-Distal,intron-Proximal	5.60013	18.66766	K562	UPF1
chr22	42981493	42981616	-	3'-UTR,intron-Distal	5.04451	17.45285	HepG2	AKAP1
chr22	42981117	42981156	-	3'-UTR,intron-Distal	6.21910	17.30102	K562	UPF1
chr22	42980657	42980725	-	3'-UTR,intron-Distal	4.73770	15.91350	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 53 entries

eCLIP assay for POLDIP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for POLDIP3 is not available on ENCORE database.
106 RBPs can affect the levels of POLDIP3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for POLDIP3 is not available on ENCORE database.

106 RBPs can affect the gene expression of POLDIP3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
POLDIP3	ENSG00000100227.13	4257.87560	2282.58880	0.89940	35.54730	33.57680	K562	AGGF1
POLDIP3	ENSG00000100227.13	4377.61710	2295.06140	0.93150	32.47300	30.35330	K562	RBM15
POLDIP3	ENSG00000100227.13	1499.26070	2558.55360	-0.77110	23.51090	22.21030	HepG2	PTBP1
POLDIP3	ENSG00000100227.13	976.50750	1605.66630	-0.71750	17.21110	15.96510	HepG2	TRIM56
POLDIP3	ENSG00000100227.13	1446.19150	2121.88480	-0.55310	15.58950	14.55540	HepG2	ZNF622
POLDIP3	ENSG00000100227.13	1903.34730	2847.48770	-0.58120	14.85620	13.79020	HepG2	NELFE
POLDIP3	ENSG00000100227.13	1498.65950	2865.53670	-0.93510	14.74330	13.41210	HepG2	DDX3X
POLDIP3	ENSG00000100227.13	1603.66190	2499.06820	-0.64000	14.37690	13.24510	HepG2	TAF15
POLDIP3	ENSG00000100227.13	4108.28250	2355.22250	0.80260	12.19080	11.09750	K562	PUS1
POLDIP3	ENSG00000100227.13	504.46110	1192.91700	-1.24170	12.53450	10.88500	HepG2	SNRNP70
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 119 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for POLDIP3 is not available on ENCORE database.

23 RBPs can affect the splicing of POLDIP3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	POLDIP3	ENSG00000100227.13	chr22	-	42997975	42998062	42995703	42995799	42998775	42999166	-0.27000	0.00000	0.00000	excluded	K562	AKAP8L
SE	POLDIP3	ENSG00000100227.13	chr22	-	42997975	42998062	42995703	42995799	42998775	42999166	-0.27600	0.00000	0.00000	excluded	K562	PUS1
SE	POLDIP3	ENSG00000100227.13	chr22	-	42997975	42998062	42995703	42995799	42998775	42999166	-0.30000	0.00000	0.00000	excluded	HepG2	SF3A3
SE	POLDIP3	ENSG00000100227.13	chr22	-	42997975	42998062	42995703	42995799	42998775	42999166	0.13900	0.00000	0.00098	included	HepG2	SUPV3L1
SE	POLDIP3	ENSG00000100227.13	chr22	-	42997975	42998062	42995703	42995799	42998775	42999166	-0.25600	0.00000	0.00003	excluded	HepG2	SF3B4
SE	POLDIP3	ENSG00000100227.13	chr22	-	42997975	42998062	42995703	42995799	42998775	42999166	-0.29600	0.00000	0.00000	excluded	K562	UTP18
SE	POLDIP3	ENSG00000100227.13	chr22	-	42997975	42998062	42995703	42995799	42998775	42999166	0.27000	0.00000	0.00003	included	K562	U2AF2
SE	POLDIP3	ENSG00000100227.13	chr22	-	42997975	42998062	42995703	42995799	42998775	42999166	-0.53200	0.00000	0.00000	excluded	K562	TARDBP
SE	POLDIP3	ENSG00000100227.13	chr22	-	42997975	42998062	42995703	42995799	42998775	42999166	-0.24500	0.00000	0.00000	excluded	K562	RBM15
SE	POLDIP3	ENSG00000100227.13	chr22	-	42993678	42993743	42992191	42992371	42995703	42995799	0.06400	0.00001	0.00254	included	K562	FMR1

Showing 1 to 10 of 31 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

POLDIP3

General Information

Functions

Localization

Domains (AlphaFold: POLDIP3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for POLDIP3 is not avaliable on ENCORE database.

16 proteins are bound to POLDIP3 RNA:

eCLIP assay for POLDIP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for POLDIP3 is not available on ENCORE database.

106 RBPs can affect the gene expression of POLDIP3 :

The Knockdown/knockout RNA-Seq assay for POLDIP3 is not available on ENCORE database.

23 RBPs can affect the splicing of POLDIP3 :

The Knockdown/knockout RNA-Seq assay for POLDIP3 is not avaliable on ENCORE database.