PKDCC

General Information

Gene Name       : PKDCC
Gene ID             : ENSG00000162878.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PKDCC)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PKDCCENSG00000162878.122.543.833.19ENCSR000AEF
HepG2PKDCCENSG00000162878.12147.0696.67121.87ENCSR985KAT
K562PKDCCENSG00000162878.121.370.851.11ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PKDCC is not avaliable on ENCORE database.



Proteins bound to RNA
  • PKDCC RNA is bound by 17 proteins.  







eCLIP assay for PKDCC is not avaliable on ENCORE database.





17 proteins are bound to PKDCC RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr24228473342284788+3'-UTR,CDS,intron-Proximal3.896073.59284HepG2LSM11
chr24228249142282560+3'-UTR,CDS,intron-Distal,intron-Proximal4.4579217.48691HepG2PRPF8
chr24228144242281480+3'-UTR,CDS,intron-Proximal4.367473.59236HepG2AQR
chr24228502842285097+3'-UTR4.073113.72506HepG2PABPN1
chr24228441342284525+3'-UTR,CDS3.591504.41784HepG2GRWD1
chr24228144242281541+3'-UTR,CDS,intron-Proximal3.422564.02291HepG2GRWD1
chr24228144242281462+3'-UTR,CDS,intron-Proximal6.3540537.52394HepG2PRPF8
chr24228215242282160+3'-UTR,CDS3.354968.54450HepG2PPIG
chr24228543242285515+3'-UTR3.123895.37546HepG2LSM11
chr24228202842282084+3'-UTR,CDS,intron-Proximal4.392237.21864HepG2SF3A3
chr24228214242282152+3'-UTR,CDS3.488709.47710HepG2PPIG
chr24228202542282087+3'-UTR,CDS,intron-Proximal4.009263.59805HepG2SF3B4
chr24228136542281419+3'-UTR,CDS3.374737.82075HepG2PPIG
chr24227530242275360+5'-UTR,CDS3.296574.30236HepG2XRN2
chr24227516542275279+5'-UTR3.916135.82539HepG2NCBP2
chr24227595042276025+CDS,intron-Proximal3.8405419.48913HepG2PRPF8
chr24227555242275596+CDS,intron-Proximal4.441685.49785HepG2XRN2
chr24227589642275956+CDS4.229233.32488HepG2DDX3X
chr24227746142277524+intron-Distal3.005263.59357HepG2NKRF
chr24227882042278949+intron-Distal5.032487.12185HepG2NKRF
chr24228182042281881+intron-Distal3.800358.59703HepG2PRPF4
chr24228182142281936+intron-Distal3.025583.33411HepG2GTF2F1
chr24227931242279416+intron-Distal3.287135.49850HepG2HNRNPL
chr24227842742278529+intron-Distal3.681935.09513HepG2HNRNPK
chr24228188142281940+intron-Distal3.443438.15831HepG2PRPF4
chr24228150842281553+intron-Distal,intron-Proximal5.580366.82887HepG2EFTUD2
chr24227882042278875+intron-Distal3.662434.88781HepG2XRN2
chr24228146242281497+intron-Proximal5.4101438.70887HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PKDCC is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PKDCC is not available on ENCORE database.

  • 101 RBPs can affect the levels of PKDCC.  








The Knockdown/knockout RNA-Seq assay for PKDCC is not available on ENCORE database.





101 RBPs can affect the gene expression of PKDCC :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PKDCCENSG00000162878.8730.11700473.071100.626005.456304.12160HepG2ADAR
PKDCCENSG00000162878.8380.74350789.92640-1.0529010.567809.59510HepG2AKAP1
PKDCCENSG00000162878.8325.99790453.37960-0.475902.558601.55650HepG2AKAP8
PKDCCENSG00000162878.8818.303301043.88640-0.351303.474202.72040HepG2AUH
PKDCCENSG00000162878.81400.00100487.790101.5210021.2164018.48490HepG2BCCIP
PKDCCENSG00000162878.81435.51340692.348801.0519012.1080010.11740HepG2CCAR1
PKDCCENSG00000162878.82210.44600620.956501.8317049.7569047.17690HepG2CIRBP
PKDCCENSG00000162878.8939.73700474.036900.9872023.6053022.09050HepG2CKAP4
PKDCCENSG00000162878.8298.85500530.51370-0.827904.819803.80520HepG2CNOT7
PKDCCENSG00000162878.8685.47980485.120400.498704.911103.55640HepG2YBX3
PKDCCENSG00000162878.81099.92040776.879100.501503.501002.68410HepG2DAZAP1
PKDCCENSG00000162878.8795.17650485.812400.710809.449307.51210HepG2DDX1
PKDCCENSG00000162878.8805.78620451.072200.836906.361805.38230HepG2DDX21
PKDCCENSG00000162878.8317.62350448.68250-0.498402.748101.46380HepG2DDX27
PKDCCENSG00000162878.8345.82970479.63770-0.471902.771501.99790HepG2DDX55
PKDCCENSG00000162878.8295.75380436.19690-0.560603.491302.36350HepG2DDX5
PKDCCENSG00000162878.8285.19850459.45440-0.688005.483304.13010HepG2DHX30
PKDCCENSG00000162878.8223.65600476.37330-1.0908014.2008012.70490HepG2DNAJC21
PKDCCENSG00000162878.8307.15550421.37890-0.456102.520401.46060HepG2EFTUD2
PKDCCENSG00000162878.8559.67300410.358300.447602.392201.54720HepG2EIF3D
PKDCCENSG00000162878.81660.50390672.356601.3042016.8314015.23530HepG2EIF4B
PKDCCENSG00000162878.8740.93740543.280500.447602.842401.73550HepG2ESF1
PKDCCENSG00000162878.81319.81510633.365701.0591012.6164011.14850HepG2FIP1L1
PKDCCENSG00000162878.8278.19420502.89550-0.854208.100606.79190HepG2FUBP3
PKDCCENSG00000162878.8725.01340463.455100.645502.528401.45780HepG2FUS
PKDCCENSG00000162878.81169.53920696.771500.747108.051706.91840HepG2FXR1
PKDCCENSG00000162878.8651.78260365.354100.835007.905206.42650HepG2GEMIN5
PKDCCENSG00000162878.8818.25700525.010100.640104.964303.59500HepG2GNB2L1
PKDCCENSG00000162878.8915.77080393.276301.219307.460106.43870HepG2GPKOW
PKDCCENSG00000162878.8945.45660491.133300.944808.059806.17750HepG2GRSF1
PKDCCENSG00000162878.8925.53960452.657601.0318016.0945014.06640HepG2HDGF
PKDCCENSG00000162878.81209.65210448.773701.4304018.9093015.46690HepG2HNRNPA0
PKDCCENSG00000162878.8997.75120480.936801.0527016.2221014.86820HepG2HNRNPA1
PKDCCENSG00000162878.8793.36740539.620800.555906.734605.68170HepG2HNRNPF
PKDCCENSG00000162878.8591.27700375.313300.655604.879704.06770HepG2HNRNPLL
PKDCCENSG00000162878.81360.95240531.406901.3566047.4855045.23280HepG2HNRNPU
PKDCCENSG00000162878.8792.26910493.499400.682804.934103.30750HepG2HSPD1
PKDCCENSG00000162878.81019.67410660.810200.625704.406703.11540HepG2KHSRP
PKDCCENSG00000162878.8712.08680493.185900.529802.839001.57660HepG2KRR1
PKDCCENSG00000162878.81061.01100540.021600.9743012.401709.98930HepG2LIN28B
PKDCCENSG00000162878.8958.78660697.015100.459903.269802.55690HepG2MAGOH
PKDCCENSG00000162878.81243.38320700.904000.826908.663107.59770HepG2MATR3
PKDCCENSG00000162878.8999.38120512.463000.9635014.1611012.48200HepG2MSI2
PKDCCENSG00000162878.81724.10570770.354801.162209.325307.95130HepG2NOL12
PKDCCENSG00000162878.8493.37790306.693500.685803.368001.60240HepG2PA2G4
PKDCCENSG00000162878.8217.72300484.94330-1.155307.775506.23730HepG2PABPC1
PKDCCENSG00000162878.8475.81260638.84990-0.425102.476401.78950HepG2PABPC4
PKDCCENSG00000162878.8872.91590526.014900.7306011.7112010.16390HepG2PARN
PKDCCENSG00000162878.81122.39340696.139100.6890010.687409.62010HepG2PCBP1
PKDCCENSG00000162878.8664.31570473.974300.487004.731303.79390HepG2PPIL4
PKDCCENSG00000162878.81128.40860461.040801.2912013.9520011.54430HepG2PRPF6
PKDCCENSG00000162878.8703.78470369.794200.928308.261506.94900HepG2PRPF8
PKDCCENSG00000162878.8917.28520735.386900.318802.286501.73710HepG2PUF60
PKDCCENSG00000162878.8557.30380780.66410-0.486206.166005.35360HepG2PUM1
PKDCCENSG00000162878.81014.84480780.082400.379503.532602.77940HepG2PUM2
PKDCCENSG00000162878.8367.17950767.20540-1.0631015.2384013.94050HepG2QKI
PKDCCENSG00000162878.8209.34420423.04410-1.014902.259101.61740HepG2RAVER1
PKDCCENSG00000162878.8309.40020505.88540-0.709302.817901.95440HepG2RBM15
PKDCCENSG00000162878.8756.297701001.73890-0.405504.144103.54300HepG2RBM22
PKDCCENSG00000162878.8435.85070696.25170-0.675806.753205.74080HepG2RBM25
PKDCCENSG00000162878.8971.87630512.441600.923306.775304.43480HepG2RBM47
PKDCCENSG00000162878.8761.74740503.800500.596404.049602.76180HepG2RCC2
PKDCCENSG00000162878.81269.35820734.135200.789909.577208.53240HepG2RECQL
PKDCCENSG00000162878.8370.54710581.34690-0.649705.646704.72230HepG2RPLP0
PKDCCENSG00000162878.8553.28860399.354300.470303.200002.54530HepG2RPS19
PKDCCENSG00000162878.8938.98170532.880900.817206.769605.52740HepG2RPS3A
PKDCCENSG00000162878.8915.18010584.074000.647805.192603.70600HepG2RPS5
PKDCCENSG00000162878.8292.85680473.24750-0.692407.380206.40110HepG2SAFB2
PKDCCENSG00000162878.8610.92650258.210001.242404.015602.31160HepG2SF1
PKDCCENSG00000162878.81006.21230655.531100.618104.264203.41710HepG2SF3A3
PKDCCENSG00000162878.8596.09660371.470300.682205.517004.54690HepG2SF3B1
PKDCCENSG00000162878.8591.58210251.014101.236703.762602.00970HepG2SFPQ
PKDCCENSG00000162878.8342.015201131.42910-1.7260061.7003060.13180HepG2SRFBP1
PKDCCENSG00000162878.8769.46380456.760000.752305.487803.34450HepG2SRP68
PKDCCENSG00000162878.81128.83370769.773100.552206.479605.82950HepG2SRSF1
PKDCCENSG00000162878.8194.97340399.74800-1.035806.934605.29870HepG2SRSF3
PKDCCENSG00000162878.8485.09430726.10950-0.581906.786505.86500HepG2SRSF5
PKDCCENSG00000162878.8782.28120530.169600.561106.869505.85420HepG2SRSF7
PKDCCENSG00000162878.8348.01820626.22280-0.8475012.0357011.02800HepG2SRSF9
PKDCCENSG00000162878.8676.83250491.869200.460402.746101.46740HepG2SSRP1
PKDCCENSG00000162878.81663.60800825.767601.0104021.5062020.03650HepG2SUCLG1
PKDCCENSG00000162878.8206.23310427.55720-1.0518011.462309.67180HepG2SUPT6H
PKDCCENSG00000162878.8298.22510691.80990-1.2140021.9374020.56960HepG2TAF15
PKDCCENSG00000162878.8534.27000365.886500.546103.714902.89030HepG2TARDBP
PKDCCENSG00000162878.81711.73220483.120801.8249017.0149014.67400HepG2TBRG4
PKDCCENSG00000162878.8758.91410516.400000.555305.786905.11450HepG2TIAL1
PKDCCENSG00000162878.8837.11160425.191400.977205.408703.39790HepG2TRA2A
PKDCCENSG00000162878.8298.53260520.97450-0.8033010.417709.42820HepG2TRIM56
PKDCCENSG00000162878.8482.57110326.041000.565603.201301.51450HepG2TROVE2
PKDCCENSG00000162878.81060.89590541.722400.9696012.6065011.23300HepG2U2AF1
PKDCCENSG00000162878.8483.99780281.980700.779305.703504.60440HepG2UCHL5
PKDCCENSG00000162878.8941.06830437.004401.106609.275007.38500HepG2UPF2
PKDCCENSG00000162878.81208.10750597.548301.0155014.3197012.20160HepG2UTP18
PKDCCENSG00000162878.81552.14660561.275901.4674057.7333055.54050HepG2UTP3
PKDCCENSG00000162878.8927.90720469.961300.9813010.013208.65200HepG2XRN2
PKDCCENSG00000162878.8292.91850496.04850-0.760008.922507.83290HepG2ZC3H8
PKDCCENSG00000162878.823.0484060.70420-1.397102.388201.83680K562AQR
PKDCCENSG00000162878.810.4506033.74270-1.691002.509601.50750K562CNOT7
PKDCCENSG00000162878.855.8510021.225701.395703.393302.68210K562DDX47
PKDCCENSG00000162878.837.6640013.834701.444802.087801.43190K562PRPF8
PKDCCENSG00000162878.89.9558035.26540-1.824602.800002.25450K562PUS1
PKDCCENSG00000162878.859.2871014.089602.073004.960003.86480K562RPS19
PKDCCENSG00000162878.849.5528011.836302.065604.749802.70000K562SERBP1
PKDCCENSG00000162878.864.7840021.393101.598403.401201.89970K562SFPQ
PKDCCENSG00000162878.810.3036028.28180-1.456702.034801.41260K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PKDCC is not available on ENCORE database.





1 RBPs can affect the splicing of PKDCC :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPKDCCENSG00000162878.8chr2+422803784228050142275913422759784228117542281680-0.201000.000610.01711excludedHepG2SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PKDCC is not avaliable on ENCORE database.