PITPNA

General Information

Gene Name       : PITPNA
Gene ID             : ENSG00000174238.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PITPNA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PITPNAENSG00000174238.1455.6145.7750.69ENCSR000AEF
HepG2PITPNAENSG00000174238.1421.9934.0228.01ENCSR985KAT
K562PITPNAENSG00000174238.1427.3335.0931.21ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PITPNA is not avaliable on ENCORE database.



Proteins bound to RNA
  • PITPNA RNA is bound by 27 proteins.  







eCLIP assay for PITPNA is not avaliable on ENCORE database.





27 proteins are bound to PITPNA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1714214381421501-3'-UTR,intron-Distal4.190137.12652K562UPF1
chr1714224721422546-3'-UTR,intron-Distal5.5453710.41090K562UPF1
chr1714229821423051-3'-UTR,intron-Distal3.056563.08662K562YBX3
chr1714218361421980-3'-UTR,intron-Distal5.2288816.54049K562UPF1
chr1714216851421783-3'-UTR,intron-Distal4.657799.20161K562UPF1
chr1714387341438801-3'-UTR,CDS,intron-Distal,intron-Proximal4.191538.51432HepG2BCLAF1
chr1714373891437502-3'-UTR,CDS,intron-Distal,intron-Proximal4.542295.11007HepG2GRWD1
chr1714387331438781-3'-UTR,CDS,intron-Distal,intron-Proximal3.678044.65365HepG2GRWD1
chr1714223421422442-3'-UTR,intron-Distal5.0789315.12816K562UPF1
chr1714387351438780-3'-UTR,CDS,intron-Distal,intron-Proximal3.844335.14848K562ZNF622
chr1714216051421760-3'-UTR,intron-Distal4.774373.92796K562AKAP1
chr1714225661422631-3'-UTR,intron-Distal5.286458.00788K562UPF1
chr1714387331438810-3'-UTR,CDS,intron-Distal,intron-Proximal4.053853.45225K562GRWD1
chr1714233621423443-3'-UTR,intron-Distal,intron-Proximal3.087613.70826K562FAM120A
chr1714516251451741-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.9199018.12993HepG2U2AF2
chr1714213321421361-3'-UTR,intron-Distal3.413853.66308K562UPF1
chr1714387321438809-3'-UTR,CDS,intron-Distal,intron-Proximal4.171626.81811K562UCHL5
chr1714563011456418-5'-UTR,CDS,intron-Distal,intron-Proximal3.469124.02291HepG2GRWD1
chr1714658571465934-5'-UTR,intron-Distal,intron-Proximal3.8993917.01004HepG2CSTF2T
chr1714658501465915-5'-UTR,CDS,intron-Distal3.5392512.03023HepG2FAM120A
chr1714658631465912-5'-UTR,intron-Distal3.593195.01332HepG2GTF2F1
chr1714658631465923-5'-UTR,intron-Distal3.640458.37089HepG2PRPF4
chr1714562621456322-5'-UTR,CDS,intron-Distal,intron-Proximal4.911557.26081HepG2PRPF8
chr1714630061463033-5'-UTR,intron-Distal4.274893.60235HepG2HNRNPM
chr1714645351464571-5'-UTR,intron-Distal4.442305.81141K562CSTF2T
chr1714636521463725-intron-Distal3.865546.28777HepG2CSTF2T
chr1714657491465804-intron-Distal4.6957217.56917HepG2CSTF2T
chr1714653111465376-intron-Distal5.133448.44606HepG2GTF2F1
chr1714649871465018-intron-Distal4.6430410.57937HepG2FAM120A
chr1714652751465409-intron-Distal4.5798933.42974HepG2FAM120A
chr1714625211462555-intron-Distal4.378413.27946HepG2HNRNPM
chr1714652941465394-intron-Distal3.080984.06851K562HNRNPU
chr1714654761465561-intron-Distal4.1470611.48387HepG2PRPF4
chr1714653081465398-intron-Distal4.2961418.37936HepG2PRPF4
chr1714654681465556-intron-Distal4.5285320.28186HepG2FAM120A
chr1714657521465793-intron-Distal4.080563.91671HepG2RBFOX2
chr1714657431465790-intron-Distal4.071868.00213K562CSTF2T
chr1714643531464444-intron-Distal,intron-Proximal4.913267.00934K562TARDBP
chr1714654641465536-intron-Distal4.938477.54986HepG2GTF2F1
chr1714652731465446-intron-Distal5.5930447.42554HepG2CSTF2T
chr1714624021462496-intron-Distal3.755943.59301K562HNRNPM
chr1714657361465787-intron-Distal5.137078.30587HepG2PRPF4
chr1714650121465133-intron-Distal3.102985.78579K562AKAP8L
chr1714646021464662-intron-Distal,intron-Proximal4.283287.75823K562CSTF2T
chr1714649781465025-intron-Distal4.021307.68837HepG2CSTF2T
chr1714542201454332-intron-Distal3.780833.06084HepG2HNRNPK
chr1714653021465396-intron-Distal3.641684.63118HepG2FASTKD2
chr1714657391465793-intron-Distal4.617854.14518HepG2GTF2F1
chr1714655531465618-intron-Distal4.001926.27244K562SLTM
chr1714634631463525-intron-Distal3.915903.34940K562HNRNPM
chr1714649821465108-intron-Distal5.6844513.40932K562EWSR1
chr1714657271465789-intron-Distal5.8377714.27215K562GTF2F1
chr1714650191465104-intron-Distal5.4073324.84066HepG2PRPF4
chr1714641631464210-intron-Distal4.504294.75311K562CSTF2T
chr1714650261465096-intron-Distal3.881498.19068K562FASTKD2
chr1714656951465729-intron-Distal4.268165.23978HepG2PRPF4
chr1714386131438708-intron-Distal,intron-Proximal3.064353.89868HepG2RBFOX2
chr1714656401465729-intron-Distal3.852736.08669HepG2RBFOX2
chr1714654601465566-intron-Distal5.2665534.98582HepG2CSTF2T
chr1714649871465098-intron-Distal3.3433610.30598K562DROSHA
chr1714655761465644-intron-Distal3.003976.65734HepG2PRPF4
chr1714655451465615-intron-Distal5.1417815.32980K562GTF2F1
chr1714656451465691-intron-Distal3.767446.48632HepG2PRPF4
chr1714647641464799-intron-Distal4.090086.26465HepG2CSTF2T
chr1714619981462052-intron-Distal3.956093.11728K562FAM120A
chr1714643391464415-intron-Distal,intron-Proximal4.6237112.52989K562CSTF2T
chr1714655611465566-intron-Distal4.588675.74291HepG2FAM120A
chr1714646131464655-intron-Distal,intron-Proximal3.750776.25245HepG2PRPF4
chr1714655661465627-intron-Distal5.5148223.97850HepG2CSTF2T
chr1714652931465377-intron-Distal4.335325.14801HepG2DGCR8
chr1714654871465616-intron-Distal3.371694.00349K562FAM120A
chr1714650021465134-intron-Distal5.0598619.76441K562GTF2F1
chr1714643411464399-intron-Distal,intron-Proximal3.679954.81215K562EWSR1
chr1714653011465388-intron-Distal6.2601316.88545K562GTF2F1
chr1714652991465416-intron-Distal5.7273114.01743K562EWSR1
chr1714649831465148-intron-Distal4.635235.71019K562FUS
chr1714624961462554-intron-Distal3.249613.34940K562HNRNPM
chr1714653021465450-intron-Distal4.310055.52774K562FUS
chr1714649791465015-intron-Distal5.3420711.35402K562CSTF2T
chr1714657431465794-intron-Distal4.4792617.75798HepG2FAM120A
chr1714651791465223-intron-Distal3.622805.29044K562CSTF2T
chr1714650151465111-intron-Distal4.0138414.53518K562CSTF2T
chr1714650251465120-intron-Distal4.7543723.54395HepG2CSTF2T
chr1714654871465566-intron-Distal3.341657.87324HepG2RBFOX2
chr1714643441464385-intron-Distal3.192156.38100HepG2CSTF2T
chr1714653071465411-intron-Distal3.717164.98444HepG2GRSF1
chr1714655731465629-intron-Distal3.811746.29610HepG2RBFOX2
chr1714631051463150-intron-Distal,intron-Proximal4.040157.17878HepG2HNRNPM
chr1714623901462442-intron-Distal3.206443.93303HepG2HNRNPM
chr1714652861465399-intron-Distal4.7617419.82141K562CSTF2T
chr1714655731465637-intron-Distal6.2125734.85368HepG2FAM120A
chr1714655571465624-intron-Distal4.2739313.94050K562CSTF2T
chr1714654851465555-intron-Distal4.222974.29105HepG2HNRNPU
chr1714650061465072-intron-Distal4.183433.37829HepG2DROSHA
chr1714656491465698-intron-Distal5.1878012.02917HepG2FAM120A
chr1714654941465624-intron-Distal5.2729315.00318K562DROSHA
chr1714655691465628-intron-Distal3.376554.06017HepG2DROSHA
chr1714652591465313-intron-Distal3.356323.62890K562FAM120A
chr1714626271462688-intron-Distal3.309403.59301K562HNRNPM
chr1714655681465690-intron-Distal4.098909.27523K562AKAP8L
chr1714655721465624-intron-Distal4.824166.11395HepG2GTF2F1
chr1714631661463209-intron-Distal,intron-Proximal4.158904.02846K562HNRNPM
chr1714655551465609-intron-Distal4.202654.29105HepG2HNRNPU
chr1714624421462486-intron-Distal4.047816.29995HepG2HNRNPM
chr1714654581465548-intron-Distal3.811477.75520K562EWSR1
chr1714619861462059-intron-Distal3.015654.12564K562CSTF2T
chr1714654761465545-intron-Distal4.632069.43009K562GTF2F1
chr1714651901465237-intron-Distal5.5005910.82255HepG2CSTF2T
chr1714650181465113-intron-Distal5.0904526.57750HepG2FAM120A
chr1714633981463435-intron-Distal3.801124.38996HepG2HNRNPM
chr1714656661465713-intron-Distal5.239127.93492K562GTF2F1
chr1714655741465624-intron-Distal4.355204.14056K562EWSR1
chr1714654721465557-intron-Distal4.9143714.64485K562CSTF2T
chr1714621411462208-intron-Distal3.760703.30664K562NONO
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PITPNA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PITPNA is not available on ENCORE database.

  • 86 RBPs can affect the levels of PITPNA.  








The Knockdown/knockout RNA-Seq assay for PITPNA is not available on ENCORE database.





86 RBPs can affect the gene expression of PITPNA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PITPNAENSG00000174238.101255.22020875.872600.519009.055108.08430HepG2ACO1
PITPNAENSG00000174238.101675.016501114.803200.587304.965904.27990HepG2AKAP1
PITPNAENSG00000174238.101222.64430922.415300.406402.937102.12890HepG2ASCC1
PITPNAENSG00000174238.101764.104601403.900300.329404.378203.54960HepG2AUH
PITPNAENSG00000174238.102298.971701346.665200.7715012.7794011.61770HepG2BOP1
PITPNAENSG00000174238.10670.14890875.68330-0.385904.561703.74900HepG2CKAP4
PITPNAENSG00000174238.10767.582201236.33790-0.687707.619506.52490HepG2CPSF6
PITPNAENSG00000174238.101885.530201263.249900.5777011.1424010.02160HepG2CELF1
PITPNAENSG00000174238.101112.957901358.35390-0.287503.666002.83240HepG2DAZAP1
PITPNAENSG00000174238.101205.58930865.756600.477606.007804.36500HepG2DDX1
PITPNAENSG00000174238.101471.988901067.917000.462903.687902.97590HepG2DDX3X
PITPNAENSG00000174238.101318.29440917.316200.523104.001403.26980HepG2DDX6
PITPNAENSG00000174238.10568.61090848.92070-0.578207.212806.12110HepG2DNAJC21
PITPNAENSG00000174238.10676.35920881.88450-0.382802.300701.75600HepG2EIF2S1
PITPNAENSG00000174238.10886.82700667.158500.410502.423001.57190HepG2EIF3D
PITPNAENSG00000174238.10830.306901283.69600-0.628607.022805.74990HepG2EIF4G2
PITPNAENSG00000174238.101862.369401611.853300.208302.100101.56160HepG2ETF1
PITPNAENSG00000174238.101219.84460855.885000.511105.677504.47800HepG2EWSR1
PITPNAENSG00000174238.101155.61360889.801400.377003.160101.94700HepG2FASTKD2
PITPNAENSG00000174238.101761.198901411.315000.319401.957101.30250HepG2FIP1L1
PITPNAENSG00000174238.10639.81900912.16400-0.511603.665002.90360HepG2G3BP1
PITPNAENSG00000174238.101111.71160836.208300.410705.447004.12410HepG2HDGF
PITPNAENSG00000174238.101220.398601407.62370-0.205902.106001.47420HepG2HNRNPF
PITPNAENSG00000174238.10888.781101237.37170-0.477408.256507.14810HepG2HNRNPL
PITPNAENSG00000174238.10757.45020973.77690-0.362402.794501.83960HepG2HNRNPM
PITPNAENSG00000174238.10743.36090947.01540-0.349303.855403.15040HepG2HNRNPU
PITPNAENSG00000174238.101926.948901356.006300.506903.672802.71720HepG2LARP4
PITPNAENSG00000174238.10628.71920983.61440-0.645705.715004.78480HepG2MAGOH
PITPNAENSG00000174238.101238.52030698.243500.826704.458503.14080HepG2METAP2
PITPNAENSG00000174238.10941.327701363.94610-0.535003.090602.06300HepG2MTPAP
PITPNAENSG00000174238.10949.191901185.91980-0.321202.198601.52970HepG2NSUN2
PITPNAENSG00000174238.101360.431001033.715100.396103.385001.60580HepG2NUP35
PITPNAENSG00000174238.101137.19570937.377300.278702.696601.85840HepG2PARN
PITPNAENSG00000174238.101270.90180994.677000.353504.378103.64420HepG2PCBP1
PITPNAENSG00000174238.10704.33730844.66120-0.262101.957401.32910HepG2PPIL4
PITPNAENSG00000174238.10718.95850892.13320-0.311402.923602.29480HepG2PUS1
PITPNAENSG00000174238.101739.29790932.514700.899206.602605.53870HepG2RAVER1
PITPNAENSG00000174238.101537.489001244.779700.304602.641001.80050HepG2RBM15
PITPNAENSG00000174238.101665.842501347.213600.306203.445102.88490HepG2RBM22
PITPNAENSG00000174238.10561.69170771.43410-0.457802.906701.81810HepG2RCC2
PITPNAENSG00000174238.101210.596701516.53550-0.325102.845002.15350HepG2RPLP0
PITPNAENSG00000174238.101099.27370649.174500.7598010.567509.46110HepG2RPS19
PITPNAENSG00000174238.101130.96550876.070300.368302.153001.44220HepG2RPS2
PITPNAENSG00000174238.10984.17320843.356300.222701.917701.36420HepG2SAFB2
PITPNAENSG00000174238.101058.68050651.547900.700207.643206.10460HepG2SERBP1
PITPNAENSG00000174238.10705.997101194.55620-0.758706.351405.30610HepG2SF3A3
PITPNAENSG00000174238.101082.349601323.92610-0.290701.933301.33720HepG2SF3B1
PITPNAENSG00000174238.10804.210101053.72730-0.389904.251803.54370HepG2SF3B4
PITPNAENSG00000174238.102107.793001521.632700.470009.671508.89060HepG2SRFBP1
PITPNAENSG00000174238.101526.314001269.477700.265702.835602.20220HepG2SRSF5
PITPNAENSG00000174238.101172.79710894.832100.390205.335004.61320HepG2SRSF9
PITPNAENSG00000174238.10857.474201321.14530-0.6236012.0848011.16030HepG2SSB
PITPNAENSG00000174238.101165.51500814.824600.516303.488002.73980HepG2SUPV3L1
PITPNAENSG00000174238.101697.992701303.484200.381403.320202.53390HepG2TARDBP
PITPNAENSG00000174238.10595.946201251.81270-1.070806.444104.89060HepG2TBRG4
PITPNAENSG00000174238.10790.60700546.122700.533603.257902.18050HepG2TFIP11
PITPNAENSG00000174238.101177.29190908.397600.374003.557502.61400HepG2TIA1
PITPNAENSG00000174238.101188.33710920.184900.368803.657203.09980HepG2TIAL1
PITPNAENSG00000174238.101665.958601256.102900.407304.263303.15090HepG2TUFM
PITPNAENSG00000174238.101491.266301207.315500.304601.961101.42250HepG2U2AF1
PITPNAENSG00000174238.101337.606401088.877000.296703.169302.05610HepG2UTP18
PITPNAENSG00000174238.10880.318701160.71370-0.398905.557204.65720HepG2ZC3H8
PITPNAENSG00000174238.101508.641701165.123500.372706.371205.63050HepG2ZNF622
PITPNAENSG00000174238.101281.402701559.22490-0.283102.199301.33380K562AKAP8
PITPNAENSG00000174238.101103.456301476.56210-0.420204.066503.27340K562AKAP8L
PITPNAENSG00000174238.102556.903902133.086700.261402.496701.32380K562APOBEC3C
PITPNAENSG00000174238.101099.977001744.27780-0.6652010.743709.18380K562CPSF6
PITPNAENSG00000174238.10688.03030872.19730-0.342202.285801.34350K562CSTF2
PITPNAENSG00000174238.10704.488201036.49520-0.557104.933103.69850K562EFTUD2
PITPNAENSG00000174238.101395.244401659.28260-0.250002.542701.84750K562EIF2S2
PITPNAENSG00000174238.101307.55140913.885300.516707.249205.97170K562EIF3G
PITPNAENSG00000174238.101354.96970794.599000.7699015.1907013.88420K562FXR1
PITPNAENSG00000174238.10577.03600940.47530-0.704708.772606.13970K562G3BP1
PITPNAENSG00000174238.101336.473101665.34240-0.317402.625101.84950K562GPKOW
PITPNAENSG00000174238.101515.757802211.02910-0.544707.580506.31370K562GRSF1
PITPNAENSG00000174238.10900.378201417.97340-0.6552011.327909.55320K562HNRNPU
PITPNAENSG00000174238.101230.169201567.08460-0.349203.065402.19430K562KIF1C
PITPNAENSG00000174238.101170.096401619.07910-0.468503.934302.98410K562MTPAP
PITPNAENSG00000174238.10944.641501230.48440-0.381402.113201.36540K562NAA15
PITPNAENSG00000174238.101413.955401799.09360-0.347503.710102.86030K562NSUN2
PITPNAENSG00000174238.10794.442701008.62800-0.344402.149401.48500K562PRPF8
PITPNAENSG00000174238.101280.781301004.432600.350503.211202.50220K562PTBP1
PITPNAENSG00000174238.102194.446502748.81800-0.325004.087002.91270K562PUM2
PITPNAENSG00000174238.10997.234501464.51430-0.554405.299204.57940K562PUS1
PITPNAENSG00000174238.101056.664601426.80780-0.433305.444704.63750K562RBM15
PITPNAENSG00000174238.101656.454002097.00780-0.340203.419801.62940K562RBM17
PITPNAENSG00000174238.101291.497601013.502300.349602.518401.48080K562NELFE
PITPNAENSG00000174238.101325.59100797.600300.732808.078206.25700K562RPS3
PITPNAENSG00000174238.10905.372101775.02120-0.9713018.3273016.37980K562SF3A3
PITPNAENSG00000174238.10585.02580808.21690-0.466204.453103.35790K562SF3B4
PITPNAENSG00000174238.101226.57510984.688600.316802.619501.92950K562SRSF1
PITPNAENSG00000174238.101485.311501922.66320-0.372305.848103.97340K562TROVE2
PITPNAENSG00000174238.10482.76800778.03770-0.688507.854506.48990K562U2AF2
PITPNAENSG00000174238.10636.293201033.61270-0.699907.206305.48160K562UCHL5
PITPNAENSG00000174238.101013.837101632.29700-0.687104.296803.19590K562WDR3
PITPNAENSG00000174238.101772.702602149.36750-0.278002.246801.48140K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PITPNA is not available on ENCORE database.





6 RBPs can affect the splicing of PITPNA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPITPNAENSG00000174238.10chr17-1446313144632114448591444934145158914516810.106000.000640.04253includedHepG2RBM22
SEPITPNAENSG00000174238.10chr17-144631314463211444859144493414515891451681-0.280000.000000.00000excludedHepG2U2AF2
SEPITPNAENSG00000174238.10chr17-145158914516811444859144493414562971456443-0.113000.000260.00391excludedK562AQR
SEPITPNAENSG00000174238.10chr17-144631314463211444859144493414515891451681-0.477000.000180.00470excludedK562U2AF2
SEPITPNAENSG00000174238.10chr17-144631314463211444859144493414515891451681-0.111000.001660.05938excludedK562SF3B1
A3SSPITPNAENSG00000174238.10chr17-1424872142507014248721424939143739214374580.057000.000000.00000longerK562AQR
A3SSPITPNAENSG00000174238.10chr17-1442028144226914420281442246144485914449340.147000.000000.00000longerK562AQR
MXEPITPNAENSG00000174238.10chr17-144485914449341451589145168114421621442246145629714564430.157000.002750.086061includedK562FXR1
MXEPITPNAENSG00000174238.10chr17-14448591444934145158914516811442162144224614562971456443-0.151000.005270.093652includedHepG2TIAL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PITPNA is not avaliable on ENCORE database.