NINJ1

General Information

Gene Name       : NINJ1
Gene ID             : ENSG00000131669.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NINJ1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NINJ1ENSG00000131669.91.555.943.75ENCSR000AEF
HepG2NINJ1ENSG00000131669.9143.6141.2292.42ENCSR985KAT
K562NINJ1ENSG00000131669.97.775.136.45ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NINJ1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NINJ1 RNA is bound by 18 proteins.  







eCLIP assay for NINJ1 is not avaliable on ENCORE database.





18 proteins are bound to NINJ1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr99588384695883900-3'-UTR,intron-Distal4.815494.78313HepG2UPF1
chr99588718295887276-3'-UTR,CDS,intron-Distal3.9681713.59393HepG2YBX3
chr99588398795884036-3'-UTR,intron-Distal,intron-Proximal3.326153.08972HepG2PCBP2
chr99588402395884109-3'-UTR,intron-Distal,intron-Proximal4.3098510.09646HepG2PCBP1
chr99588403395884110-3'-UTR,intron-Distal,intron-Proximal3.430998.62271HepG2DDX55
chr99588402395884145-3'-UTR,intron-Distal,intron-Proximal3.320687.18331HepG2AKAP1
chr99588399795884114-3'-UTR,intron-Distal,intron-Proximal5.2319117.63353HepG2UPF1
chr99588384295883912-3'-UTR,intron-Distal3.698558.41667HepG2DDX55
chr99588438395884439-3'-UTR,intron-Distal4.317584.13758HepG2AKAP1
chr99588384995883942-3'-UTR,intron-Distal7.9548423.06859K562PUM2
chr99588432595884383-3'-UTR,intron-Distal3.713285.63973HepG2AKAP1
chr99588384695883900-3'-UTR,intron-Distal3.449096.45914HepG2AKAP1
chr99588384895883901-3'-UTR,intron-Distal4.215829.36557HepG2LARP4
chr99588401495884142-3'-UTR,intron-Distal,intron-Proximal3.300366.95862HepG2IGF2BP3
chr99588444595884500-3'-UTR,intron-Distal3.206224.74960HepG2UPF1
chr99588383495883889-3'-UTR,intron-Distal3.870963.33095HepG2IGF2BP3
chr99588416795884320-3'-UTR,intron-Distal,intron-Proximal5.1762317.73545HepG2UPF1
chr99588392095883967-3'-UTR,intron-Distal4.606566.23064HepG2UPF1
chr99588432095884403-3'-UTR,intron-Distal4.5223014.36976HepG2UPF1
chr99589647795896550-5'-UTR,CDS,intron-Distal,intron-Proximal4.6805623.82117HepG2DDX3X
chr99589650095896536-5'-UTR,intron-Distal,intron-Proximal3.393554.69916HepG2SRSF1
chr99588871395888770-CDS,intron-Distal3.207505.57370HepG2DDX3X
chr99588888595888921-CDS,intron-Distal,intron-Proximal4.022186.67587HepG2DDX3X
chr99588879195888816-CDS,intron-Distal3.910995.66448HepG2DDX3X
chr99588864795888711-CDS,intron-Distal,intron-Proximal3.459984.83899HepG2PRPF8
chr99589647595896500-CDS,intron-Distal3.299527.02296HepG2SRSF1
chr99589632995896404-intron-Distal4.563418.64430HepG2RBM22
chr99589383695893898-intron-Distal,intron-Proximal3.359026.73713HepG2CSTF2T
chr99589494095894986-intron-Distal3.378093.46580HepG2CSTF2T
chr99588917595889253-intron-Distal3.001735.44187HepG2CSTF2T
chr99589632395896397-intron-Distal4.823286.36553HepG2RBFOX2
chr99588937795889466-intron-Distal4.201276.99039HepG2CSTF2T
chr99589462095894687-intron-Distal3.118376.38100HepG2CSTF2T
chr99589180295891881-intron-Distal3.664748.15854HepG2CSTF2T
chr99589463095894729-intron-Distal3.208513.30948HepG2PRPF4
chr99588706595887157-intron-Distal,intron-Proximal4.068744.71325HepG2RBM22
chr99589469995894762-intron-Distal3.513454.16791HepG2NKRF
chr99589595695896021-intron-Distal3.210125.12571HepG2CSTF2T
chr99588950595889539-intron-Distal3.832793.16310HepG2CSTF2T
chr99589463095894681-intron-Distal3.571474.33898HepG2FAM120A
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NINJ1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NINJ1 is not available on ENCORE database.

  • 105 RBPs can affect the levels of NINJ1.  








The Knockdown/knockout RNA-Seq assay for NINJ1 is not available on ENCORE database.





105 RBPs can affect the gene expression of NINJ1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NINJ1ENSG00000131669.5345.13880705.75200-1.032003.534002.33170HepG2AATF
NINJ1ENSG00000131669.51115.690101843.45500-0.724502.694302.16950HepG2AKAP1
NINJ1ENSG00000131669.52538.902901525.148700.735205.709504.60440HepG2ASCC1
NINJ1ENSG00000131669.51399.42310785.044900.833902.411601.53810HepG2BCCIP
NINJ1ENSG00000131669.52242.74910970.888601.2078026.8688025.32510HepG2BOP1
NINJ1ENSG00000131669.51945.052201406.296800.4678010.419809.29960HepG2CKAP4
NINJ1ENSG00000131669.51780.724301342.637400.407302.956801.81730HepG2CPSF7
NINJ1ENSG00000131669.5977.27060670.537700.543303.352902.23300HepG2YBX3
NINJ1ENSG00000131669.5885.41010484.551400.869603.486702.29160HepG2CSTF2
NINJ1ENSG00000131669.51313.778701088.275500.271603.154202.37060HepG2DAZAP1
NINJ1ENSG00000131669.5946.16980671.464200.494703.466802.17010HepG2DDX1
NINJ1ENSG00000131669.52186.391001517.435900.526803.202602.54320HepG2DDX6
NINJ1ENSG00000131669.51343.85370658.405001.0292010.954009.63110HepG2DNAJC21
NINJ1ENSG00000131669.51333.31380652.609601.0306034.3651032.31590HepG2DNAJC2
NINJ1ENSG00000131669.51421.313301028.317400.466803.769102.70610HepG2EEF2
NINJ1ENSG00000131669.51734.067301236.880600.487405.346403.75330HepG2EIF2S2
NINJ1ENSG00000131669.5579.384301073.65570-0.8899016.1445014.47020HepG2EIF4G1
NINJ1ENSG00000131669.51306.037601028.492500.344602.521301.74240HepG2EIF4G2
NINJ1ENSG00000131669.52251.628701900.395400.244601.918301.39830HepG2ETF1
NINJ1ENSG00000131669.5526.09890892.88630-0.763102.996701.93830HepG2FTO
NINJ1ENSG00000131669.5982.82570743.130800.403202.757701.86100HepG2GEMIN5
NINJ1ENSG00000131669.51955.650901010.283200.9528013.2228011.92460HepG2GPKOW
NINJ1ENSG00000131669.51690.780901342.969200.332204.526203.30200HepG2HDGF
NINJ1ENSG00000131669.51169.68270664.712900.8152011.6314010.45190HepG2HNRNPA1
NINJ1ENSG00000131669.51290.07970781.112700.723803.336301.79840HepG2HNRNPAB
NINJ1ENSG00000131669.51933.471001315.610300.5554011.092509.78250HepG2HNRNPF
NINJ1ENSG00000131669.51325.15540991.333900.418606.817005.80350HepG2HNRNPL
NINJ1ENSG00000131669.51525.18860964.138700.661607.345806.37770HepG2HNRNPLL
NINJ1ENSG00000131669.51376.25170734.487600.9058024.1649022.51260HepG2HNRNPU
NINJ1ENSG00000131669.51966.334201295.495500.601909.578208.30750HepG2IGF2BP1
NINJ1ENSG00000131669.52229.265601532.780200.540303.154202.43910HepG2IGF2BP2
NINJ1ENSG00000131669.51131.91100750.253700.5932012.2939010.87110HepG2ILF2
NINJ1ENSG00000131669.51635.595601285.866800.347004.287003.02880HepG2KIF1C
NINJ1ENSG00000131669.52965.354701652.038400.843907.179905.82810HepG2LARP4
NINJ1ENSG00000131669.52399.388801635.913700.552503.734003.01080HepG2MATR3
NINJ1ENSG00000131669.5317.24000597.43930-0.913202.736401.32790HepG2NIP7
NINJ1ENSG00000131669.51485.402101079.132100.460902.542801.81250HepG2NOL12
NINJ1ENSG00000131669.51091.65020678.800200.685404.356902.56590HepG2NOLC1
NINJ1ENSG00000131669.51706.22330863.739000.982006.379004.99550HepG2PABPC1
NINJ1ENSG00000131669.52117.294001490.377200.506403.124802.35990HepG2PABPC4
NINJ1ENSG00000131669.51198.06240655.103200.8708014.4698012.86000HepG2PPIL4
NINJ1ENSG00000131669.51265.261501714.82030-0.438606.758205.97750HepG2PTBP1
NINJ1ENSG00000131669.52004.627801030.127600.9604019.6196018.22550HepG2PUF60
NINJ1ENSG00000131669.51556.941401093.527800.5096011.0862010.06560HepG2PUM1
NINJ1ENSG00000131669.51367.546801092.727900.323602.977002.28120HepG2PUM2
NINJ1ENSG00000131669.51418.342301857.12500-0.388904.726303.94220HepG2QKI
NINJ1ENSG00000131669.51159.70880385.472701.589006.442203.51290HepG2RBM17
NINJ1ENSG00000131669.51330.631001588.35460-0.255402.455201.95940HepG2RBM22
NINJ1ENSG00000131669.5745.18390338.075801.140103.711801.79720HepG2RBM39
NINJ1ENSG00000131669.51172.34790647.129400.857205.261203.79130HepG2RCC2
NINJ1ENSG00000131669.51557.179001908.40390-0.293403.601603.00070HepG2NELFE
NINJ1ENSG00000131669.51283.814001777.46670-0.469408.064907.09480HepG2RECQL
NINJ1ENSG00000131669.52404.247901417.310700.762303.835003.05140HepG2RPLP0
NINJ1ENSG00000131669.51549.33160812.266200.9315017.2282015.88650HepG2RPS19
NINJ1ENSG00000131669.51363.84060734.853900.892006.026504.87060HepG2RPS2
NINJ1ENSG00000131669.51070.87900654.090000.7111014.3110013.01660HepG2SAFB2
NINJ1ENSG00000131669.5833.75790372.204701.163403.848802.18930HepG2SF1
NINJ1ENSG00000131669.52982.104801570.242300.9252010.780409.38550HepG2SF3A3
NINJ1ENSG00000131669.51654.60710954.263100.793907.992906.85090HepG2SF3B1
NINJ1ENSG00000131669.51557.677301785.29230-0.196801.848501.34880HepG2SF3B4
NINJ1ENSG00000131669.5909.52630361.537501.330904.473802.56180HepG2SFPQ
NINJ1ENSG00000131669.51589.71470987.735600.6865018.0922016.59380HepG2SLBP
NINJ1ENSG00000131669.51197.44170762.773400.6505014.3491013.06180HepG2SMN1
NINJ1ENSG00000131669.51235.54810732.659200.753803.394102.32000HepG2SMNDC1
NINJ1ENSG00000131669.51066.31280333.006201.678907.974105.51190HepG2SNRNP200
NINJ1ENSG00000131669.5758.348601061.80070-0.485602.479901.74130HepG2SNRNP70
NINJ1ENSG00000131669.51066.294501793.94500-0.7505020.9005019.85900HepG2SRFBP1
NINJ1ENSG00000131669.51560.587201863.48190-0.255902.367401.92080HepG2SRSF1
NINJ1ENSG00000131669.52085.954201017.103201.0361026.4678024.80880HepG2SRSF5
NINJ1ENSG00000131669.51856.697301292.561200.522409.956008.77830HepG2SRSF7
NINJ1ENSG00000131669.51960.889201557.493900.332204.838804.19740HepG2SSB
NINJ1ENSG00000131669.51453.144501156.724600.329004.595003.82990HepG2SUCLG1
NINJ1ENSG00000131669.5682.500901675.03470-1.2953040.3716038.55990HepG2TAF15
NINJ1ENSG00000131669.51272.22380939.937900.436603.705702.88260HepG2TARDBP
NINJ1ENSG00000131669.51738.02690713.668801.2840037.2165035.76910HepG2TIAL1
NINJ1ENSG00000131669.51500.16920720.073301.0588033.4451031.75190HepG2TRIM56
NINJ1ENSG00000131669.51752.717601006.394100.800304.266103.15250HepG2TUFM
NINJ1ENSG00000131669.51084.62030386.877801.487105.967204.46810HepG2U2AF2
NINJ1ENSG00000131669.51421.982201065.254300.416602.841301.99480HepG2UBE2L3
NINJ1ENSG00000131669.5869.65180453.717700.938504.183603.24940HepG2UCHL5
NINJ1ENSG00000131669.52034.635601392.563100.5469012.7601011.46390HepG2UPF1
NINJ1ENSG00000131669.51633.116301344.467600.280503.562302.89860HepG2UTP3
NINJ1ENSG00000131669.5431.015601049.74360-1.2842038.8698036.95020HepG2ZC3H8
NINJ1ENSG00000131669.52360.383601531.555300.6239020.5408019.39110HepG2ZNF622
NINJ1ENSG00000131669.563.49680130.12810-1.035204.345702.73460K562APOBEC3C
NINJ1ENSG00000131669.5114.2859050.260301.185104.593603.33900K562BCLAF1
NINJ1ENSG00000131669.5111.19030181.43900-0.706503.350402.27570K562CELF1
NINJ1ENSG00000131669.5210.4558070.587701.5759012.7207011.35060K562EIF2S2
NINJ1ENSG00000131669.5159.9530097.051300.720703.361102.06460K562EIF4B
NINJ1ENSG00000131669.5130.1041079.721200.706502.614801.38650K562EXOSC5
NINJ1ENSG00000131669.5105.3052051.931701.019803.582102.60700K562FIP1L1
NINJ1ENSG00000131669.550.87680112.08150-1.139504.632603.87710K562FXR1
NINJ1ENSG00000131669.55.0369024.36260-2.274102.975402.23940K562G3BP2
NINJ1ENSG00000131669.5119.8185050.335201.251104.906003.85170K562GPKOW
NINJ1ENSG00000131669.5252.6677070.404301.8434015.4999013.70070K562HSPD1
NINJ1ENSG00000131669.5130.0721058.188001.160403.239102.09690K562IGF2BP2
NINJ1ENSG00000131669.592.4607045.393701.026202.796801.49530K562NONO
NINJ1ENSG00000131669.5131.6324063.031901.062303.393702.00800K562PABPC1
NINJ1ENSG00000131669.555.37970101.40470-0.872702.470601.68560K562PCBP3
NINJ1ENSG00000131669.539.5938077.77800-0.974102.678101.89180K562POLR2G
NINJ1ENSG00000131669.5123.7600058.956901.069704.491703.41090K562PPIG
NINJ1ENSG00000131669.550.49020119.61330-1.244304.188801.92480K562PRPF6
NINJ1ENSG00000131669.5114.2177059.394100.943303.762202.99880K562PTBP1
NINJ1ENSG00000131669.5102.73560160.90980-0.647302.261601.52510K562PUF60
NINJ1ENSG00000131669.5147.86440272.44230-0.881704.516203.84600K562PUS1
NINJ1ENSG00000131669.5181.42310265.46950-0.549202.699002.11180K562RBM15
NINJ1ENSG00000131669.5257.70240108.314701.250403.205001.52040K562RBM39
NINJ1ENSG00000131669.5126.7531070.434100.847603.073102.02170K562RCC2
NINJ1ENSG00000131669.5120.3210059.765401.009402.992101.41140K562SBDS
NINJ1ENSG00000131669.557.1209025.291001.175302.836201.97070K562SF3B4
NINJ1ENSG00000131669.5247.1239098.070001.333305.430803.33240K562SFPQ
NINJ1ENSG00000131669.5106.7277054.998700.956403.390902.20790K562SRSF5
NINJ1ENSG00000131669.5103.2092058.925700.808502.505201.82920K562TARDBP
NINJ1ENSG00000131669.5128.9870056.841901.182105.246104.06790K562TIA1
NINJ1ENSG00000131669.5109.7336055.791700.975803.387002.15420K562TRA2A
NINJ1ENSG00000131669.5140.2405078.877200.830103.059702.05510K562TRIM56
NINJ1ENSG00000131669.5106.9904045.855601.222204.095102.83110K562UCHL5
NINJ1ENSG00000131669.562.36220114.89220-0.881503.591302.63520K562WDR43
NINJ1ENSG00000131669.5107.5209046.721101.202404.170302.56880K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NINJ1 is not available on ENCORE database.





2 RBPs can affect the splicing of NINJ1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXENINJ1ENSG00000131669.5chr9-95887180958873449588869195888920958837709588451295896424958965700.056000.000000.000141includedHepG2HNRNPC
MXENINJ1ENSG00000131669.5chr9-95887180958873449588869195888920958837709588451295896424958965700.233000.000000.000001includedHepG2NCBP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NINJ1 is not avaliable on ENCORE database.