NDUFA4

General Information

Gene Name       : NDUFA4
Gene ID             : ENSG00000189043.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NDUFA4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NDUFA4ENSG00000189043.970.4171.4770.94ENCSR000AEF
HepG2NDUFA4ENSG00000189043.972.9778.1875.58ENCSR985KAT
K562NDUFA4ENSG00000189043.9125.0494.58109.81ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NDUFA4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NDUFA4 RNA is bound by 20 proteins.  







eCLIP assay for NDUFA4 is not avaliable on ENCORE database.





20 proteins are bound to NDUFA4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr71097311510973182-3'-UTR,intron-Distal,intron-Proximal5.4953444.69156HepG2LARP4
chr71097326010973319-3'-UTR,CDS,intron-Distal,intron-Proximal3.4031011.49229K562PABPC4
chr71097310710973171-3'-UTR,intron-Distal,intron-Proximal4.5840811.26012K562IGF2BP1
chr71097316710973258-3'-UTR,intron-Distal,intron-Proximal3.242564.24070HepG2GRWD1
chr71097325310973320-3'-UTR,CDS,intron-Distal,intron-Proximal3.945295.75821HepG2SUB1
chr71097313210973187-3'-UTR,intron-Distal,intron-Proximal3.4126921.82400K562PABPC4
chr71097326110973320-3'-UTR,CDS,intron-Distal,intron-Proximal3.097283.46619K562GRWD1
chr71097317110973237-3'-UTR,intron-Distal,intron-Proximal3.4474711.68388K562IGF2BP1
chr71097317910973247-3'-UTR,intron-Distal,intron-Proximal3.9767911.69392K562IGF2BP2
chr71097310710973223-3'-UTR,intron-Distal,intron-Proximal3.780585.03349HepG2AKAP1
chr71097319110973249-3'-UTR,intron-Distal,intron-Proximal3.439516.90689K562GEMIN5
chr71097309810973132-3'-UTR,intron-Distal,intron-Proximal4.4910535.38759K562PABPC4
chr71097326410973316-3'-UTR,CDS,intron-Distal,intron-Proximal3.9760010.22807HepG2LARP4
chr71097325510973299-3'-UTR,CDS,intron-Distal,intron-Proximal4.6769918.13114K562IGF2BP1
chr71097317510973248-3'-UTR,intron-Distal,intron-Proximal4.632804.84422HepG2IGF2BP1
chr71097318210973253-3'-UTR,intron-Distal,intron-Proximal4.4495729.88343HepG2LARP4
chr71097325310973316-3'-UTR,CDS,intron-Distal,intron-Proximal6.531707.43897K562RPS3
chr71097325410973320-3'-UTR,CDS,intron-Distal,intron-Proximal4.7399219.50019K562SND1
chr71097964510979752-5'-UTR,CDS,intron-Distal,intron-Proximal3.9900731.65134HepG2DDX3X
chr71097966310979755-5'-UTR,CDS,intron-Distal,intron-Proximal5.5059117.75063K562EIF3G
chr71097965410979758-5'-UTR,CDS,intron-Distal,intron-Proximal3.8490618.07016HepG2RPS3
chr71097964110979709-5'-UTR,CDS,intron-Distal,intron-Proximal5.41856400.00000K562GEMIN5
chr71097970610979751-5'-UTR,intron-Distal,intron-Proximal4.12905400.00000K562DDX3X
chr71097964910979751-5'-UTR,CDS,intron-Distal,intron-Proximal3.1794313.86299K562RPS3
chr71097964110979742-5'-UTR,CDS,intron-Distal,intron-Proximal4.093523.45687HepG2IGF2BP3
chr71097970910979760-5'-UTR,intron-Distal,intron-Proximal6.43419400.00000K562GEMIN5
chr71097965410979692-5'-UTR,CDS,intron-Distal3.075729.56234K562IGF2BP2
chr71097971010979749-5'-UTR,intron-Distal,intron-Proximal3.0479233.87209K562YBX3
chr71097967910979688-5'-UTR,CDS,intron-Distal3.9367126.53459K562YBX3
chr71097964210979750-5'-UTR,CDS,intron-Distal,intron-Proximal4.4235115.67497K562DROSHA
chr71097964810979706-5'-UTR,CDS,intron-Distal3.90105400.00000K562DDX3X
chr71097975210979784-5'-UTR,intron-Distal,intron-Proximal3.5776815.49218K562DDX3X
chr71097767410977746-CDS,intron-Distal,intron-Proximal5.783428.16831K562GPKOW
chr71097849010978506-CDS,intron-Distal4.6607855.89089K562PUM2
chr71097844710978510-CDS,intron-Distal4.733904.94988HepG2SND1
chr71097964510979654-CDS,intron-Distal3.504894.25976K562IGF2BP2
chr71097850610978520-CDS,intron-Distal3.5452216.29813K562YBX3
chr71097964110979645-CDS,intron-Distal3.578693.65508K562IGF2BP2
chr71097967210979679-CDS,intron-Distal3.2863313.26195K562YBX3
chr71097852010978523-CDS,intron-Distal3.4991215.53855K562YBX3
chr71097326710973318-CDS,intron-Distal,intron-Proximal4.1923614.25864K562YBX3
chr71097771610977744-CDS,intron-Distal,intron-Proximal3.903977.79897K562SND1
chr71097773110977774-CDS,intron-Distal3.354593.70380HepG2LARP4
chr71097771610977763-CDS,intron-Distal,intron-Proximal3.125583.96632K562IGF2BP2
chr71097843210978508-CDS,intron-Distal,intron-Proximal3.662926.94885HepG2SUB1
chr71097965210979672-CDS,intron-Distal3.5154525.26280K562YBX3
chr71097845610978508-CDS,intron-Distal4.788757.70257K562RPS3
chr71097774410977775-CDS,intron-Distal,intron-Proximal3.788448.91754K562SND1
chr71097850610978524-CDS,intron-Distal,intron-Proximal4.2125127.54804K562DDX3X
chr71097844510978526-CDS,intron-Distal,intron-Proximal4.0323127.95386K562GEMIN5
chr71097843610978524-CDS,intron-Distal,intron-Proximal3.543597.86922HepG2RPS3
chr71097843410978456-CDS,intron-Distal,intron-Proximal5.060915.31332K562RPS3
chr71097843610978476-CDS,intron-Distal4.0133722.42987K562SND1
chr71097843610978507-CDS,intron-Distal4.6650212.80402HepG2LARP4
chr71097850610978524-CDS,intron-Distal,intron-Proximal4.1233416.94329K562PUM2
chr71097964410979652-CDS,intron-Distal3.2348516.78893K562YBX3
chr71097964210979648-CDS,intron-Distal3.7631832.44058K562DDX3X
chr71097771610977763-CDS,intron-Distal,intron-Proximal4.6763915.42317K562IGF2BP1
chr71097964210979644-CDS,intron-Distal3.2059014.75664K562YBX3
chr71097843510978490-CDS,intron-Distal4.3204452.78797K562PUM2
chr71097329910973320-CDS,intron-Distal5.3419925.67906K562IGF2BP1
chr71097771610977721-CDS,intron-Distal,intron-Proximal3.302493.86052K562YBX3
chr71097847610978506-CDS,intron-Distal3.1273413.19107K562SND1
chr71097843310978436-CDS,intron-Distal,intron-Proximal4.3665310.46407K562SND1
chr71097774210977798-CDS,intron-Distal,intron-Proximal4.082405.26367K562AQR
chr71097761710977692-intron-Distal,intron-Proximal4.173743.66668K562KHSRP
chr71097760410977679-intron-Distal,intron-Proximal3.223463.20886K562PRPF8
chr71097765510977711-intron-Distal,intron-Proximal3.743364.00320K562AQR
chr71097954310979633-intron-Distal,intron-Proximal4.292565.97994K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NDUFA4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NDUFA4 is not available on ENCORE database.

  • 101 RBPs can affect the levels of NDUFA4.  








The Knockdown/knockout RNA-Seq assay for NDUFA4 is not available on ENCORE database.





101 RBPs can affect the gene expression of NDUFA4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NDUFA4ENSG00000189043.5799.19470591.469800.434103.230402.59010HepG2BOP1
NDUFA4ENSG00000189043.51803.685701483.584500.281804.143603.36110HepG2CKAP4
NDUFA4ENSG00000189043.52900.338802515.800300.205102.609901.88630HepG2DAZAP1
NDUFA4ENSG00000189043.51627.444101372.466900.245703.029002.15960HepG2DDX19B
NDUFA4ENSG00000189043.5655.53550922.29050-0.492504.693002.97550HepG2DDX52
NDUFA4ENSG00000189043.52033.068402963.53270-0.543704.965004.15920HepG2DDX6
NDUFA4ENSG00000189043.51650.428001419.795300.217102.095901.49380HepG2DKC1
NDUFA4ENSG00000189043.5985.157301211.85060-0.298803.753603.01570HepG2DNAJC2
NDUFA4ENSG00000189043.51787.552402849.36350-0.672707.133206.21340HepG2EIF2S1
NDUFA4ENSG00000189043.52311.283403149.09810-0.446203.520702.80190HepG2EIF4A3
NDUFA4ENSG00000189043.52188.111003065.67570-0.486503.290402.54310HepG2EIF4B
NDUFA4ENSG00000189043.5906.110701264.67610-0.481004.018603.07880HepG2FUBP3
NDUFA4ENSG00000189043.51833.378403176.65290-0.7930011.4949010.18330HepG2FXR1
NDUFA4ENSG00000189043.52278.428002947.15600-0.371302.718202.05800HepG2G3BP1
NDUFA4ENSG00000189043.52128.871003128.33360-0.555305.920204.60630HepG2G3BP2
NDUFA4ENSG00000189043.5879.288301677.01380-0.9315013.2895011.08150HepG2GNB2L1
NDUFA4ENSG00000189043.51073.136901416.75550-0.400805.820304.46450HepG2HDGF
NDUFA4ENSG00000189043.51483.975601234.389100.265601.888801.34350HepG2HNRNPA1
NDUFA4ENSG00000189043.52253.951302983.45790-0.404503.967703.14560HepG2HNRNPK
NDUFA4ENSG00000189043.5875.43160587.431800.575504.812204.00570HepG2HNRNPLL
NDUFA4ENSG00000189043.51153.827101356.51820-0.233502.648201.64810HepG2KIF1C
NDUFA4ENSG00000189043.52083.543303195.65110-0.617106.345605.42140HepG2MATR3
NDUFA4ENSG00000189043.52269.423503271.01320-0.527405.146604.29470HepG2NCBP2
NDUFA4ENSG00000189043.52003.000602494.66010-0.316703.765202.87330HepG2NOL12
NDUFA4ENSG00000189043.51831.939302913.44850-0.669407.970906.76020HepG2PABPC4
NDUFA4ENSG00000189043.51080.516601350.08220-0.321303.723502.75800HepG2PARN
NDUFA4ENSG00000189043.52014.974002973.33600-0.5613014.4521013.24270HepG2PCBP1
NDUFA4ENSG00000189043.5933.010401216.53010-0.382804.331303.43030HepG2PPIL4
NDUFA4ENSG00000189043.5830.825901382.56450-0.734707.509106.25530HepG2PRPF8
NDUFA4ENSG00000189043.51785.737103025.50700-0.7607024.2606022.94650HepG2PTBP1
NDUFA4ENSG00000189043.52269.264002527.90300-0.155701.894101.38340HepG2PUM1
NDUFA4ENSG00000189043.51988.619302526.06560-0.345104.110003.29950HepG2PUM2
NDUFA4ENSG00000189043.52212.394503276.64240-0.5666011.3315010.19400HepG2QKI
NDUFA4ENSG00000189043.52207.371602973.78490-0.430005.490204.57010HepG2RBM25
NDUFA4ENSG00000189043.52153.510403367.07680-0.644809.021308.14630HepG2NELFE
NDUFA4ENSG00000189043.51831.030103136.01440-0.7763026.3670024.80860HepG2RECQL
NDUFA4ENSG00000189043.51124.873801539.42940-0.452602.419101.53490HepG2RPS10
NDUFA4ENSG00000189043.52105.953803149.89590-0.5808015.4558014.22990HepG2SF3B4
NDUFA4ENSG00000189043.51166.855601416.50520-0.279703.842803.10500HepG2SMN1
NDUFA4ENSG00000189043.51310.365102351.22750-0.8434027.1093025.43200HepG2SRSF5
NDUFA4ENSG00000189043.51341.289802674.84050-0.9958041.8513040.20750HepG2SRSF9
NDUFA4ENSG00000189043.51704.786302356.27180-0.466907.726706.95390HepG2SSB
NDUFA4ENSG00000189043.5557.27540875.30690-0.651405.370003.65330HepG2SSRP1
NDUFA4ENSG00000189043.52136.856902674.00840-0.323506.150005.29030HepG2SUCLG1
NDUFA4ENSG00000189043.52163.731601783.716600.278502.075101.47720HepG2SUPV3L1
NDUFA4ENSG00000189043.52169.160802955.28240-0.446207.549006.69750HepG2TAF15
NDUFA4ENSG00000189043.51349.83750859.739900.650702.722501.66290HepG2TBRG4
NDUFA4ENSG00000189043.51910.029502715.44490-0.507607.643506.26880HepG2TIA1
NDUFA4ENSG00000189043.51121.101901325.36130-0.241501.972701.53560HepG2TIAL1
NDUFA4ENSG00000189043.51102.383001573.53950-0.513403.168801.60060HepG2TRA2A
NDUFA4ENSG00000189043.51051.765701337.17090-0.346404.286103.61430HepG2TRIM56
NDUFA4ENSG00000189043.5555.854502326.46290-2.0654084.1168080.21270HepG2TUFM
NDUFA4ENSG00000189043.51636.789302462.50860-0.589305.969404.71040HepG2UBE2L3
NDUFA4ENSG00000189043.51603.775601053.780600.605806.859305.65070HepG2UCHL5
NDUFA4ENSG00000189043.51244.298001052.793700.241002.382401.72640HepG2UPF1
NDUFA4ENSG00000189043.52224.298101633.663500.445103.134602.06380HepG2UPF2
NDUFA4ENSG00000189043.51249.101501016.434100.297302.700902.10960HepG2UTP3
NDUFA4ENSG00000189043.51095.777901541.05170-0.492002.909201.61510HepG2XRCC5
NDUFA4ENSG00000189043.52606.181501755.869700.569706.976505.83680HepG2XRN2
NDUFA4ENSG00000189043.51514.459301157.874400.387206.779806.02230HepG2ZNF622
NDUFA4ENSG00000189043.51075.559801565.71210-0.541703.783902.25100HepG2ZRANB2
NDUFA4ENSG00000189043.54429.595602910.196000.6060019.0166017.65140K562AGGF1
NDUFA4ENSG00000189043.54024.695803197.755900.331703.217102.13800K562AKAP8
NDUFA4ENSG00000189043.55937.732003028.163900.9714023.6420021.39010K562AKAP8L
NDUFA4ENSG00000189043.55255.020006882.86050-0.389304.235603.53910K562AQR
NDUFA4ENSG00000189043.53722.107003177.221900.228302.444201.59030K562ATP5C1
NDUFA4ENSG00000189043.51192.460901709.83390-0.519903.820002.53970K562CCAR1
NDUFA4ENSG00000189043.52366.420203130.92980-0.403905.499503.93060K562CSTF2
NDUFA4ENSG00000189043.53744.801002954.780600.341704.022802.73630K562DDX3X
NDUFA4ENSG00000189043.52673.628003280.40680-0.295104.504503.70010K562DDX47
NDUFA4ENSG00000189043.51278.601301913.98770-0.582004.592102.81180K562DHX30
NDUFA4ENSG00000189043.53808.589403258.690400.224902.584701.74250K562DKC1
NDUFA4ENSG00000189043.51293.859001838.71860-0.507003.532001.99960K562DNAJC21
NDUFA4ENSG00000189043.53040.874004275.26470-0.491505.624104.65240K562EIF2S2
NDUFA4ENSG00000189043.5979.562701739.26520-0.828303.787802.58850K562EIF3A
NDUFA4ENSG00000189043.53256.144302694.717100.272903.212701.80100K562EWSR1
NDUFA4ENSG00000189043.52216.110602935.63970-0.405602.817801.54170K562EXOSC5
NDUFA4ENSG00000189043.53815.199002493.630900.613403.967502.94030K562FIP1L1
NDUFA4ENSG00000189043.51336.882201821.06900-0.445903.762702.41930K562FKBP4
NDUFA4ENSG00000189043.52933.275603869.44470-0.399602.617801.93390K562G3BP2
NDUFA4ENSG00000189043.53240.770401635.941400.986102.543301.38780K562HNRNPA2B1
NDUFA4ENSG00000189043.51634.862102096.69900-0.359003.671102.99620K562HNRNPC
NDUFA4ENSG00000189043.53204.602402051.415100.643403.425602.38110K562HNRNPM
NDUFA4ENSG00000189043.53227.597904609.66540-0.5142010.738809.00590K562HNRNPU
NDUFA4ENSG00000189043.51114.809301726.64960-0.631204.947502.97030K562KHDRBS1
NDUFA4ENSG00000189043.54372.157503213.733300.444004.226603.17690K562KIF1C
NDUFA4ENSG00000189043.52548.808702031.022400.327502.857801.44750K562LARP7
NDUFA4ENSG00000189043.54206.291002523.457000.737007.693605.92960K562NAA15
NDUFA4ENSG00000189043.52231.428502856.89420-0.356508.972907.73370K562NSUN2
NDUFA4ENSG00000189043.53823.006301429.824001.418807.993005.99730K562PABPN1
NDUFA4ENSG00000189043.52572.519002047.194300.329402.736601.32550K562PHF6
NDUFA4ENSG00000189043.54483.485002831.295200.663103.458502.52570K562PPIG
NDUFA4ENSG00000189043.53394.201701698.760200.998503.055201.50330K562PPP1R8
NDUFA4ENSG00000189043.52273.278201879.970000.274002.117001.33620K562PSIP1
NDUFA4ENSG00000189043.53682.512304594.93990-0.319403.669702.91640K562PTBP1
NDUFA4ENSG00000189043.56146.104303003.300801.0330023.3353021.77810K562PUS1
NDUFA4ENSG00000189043.54646.884602926.104100.6672017.0505015.56070K562RBM15
NDUFA4ENSG00000189043.52875.974204405.31860-0.615209.389707.69260K562RBM22
NDUFA4ENSG00000189043.52309.596602973.47830-0.364502.094101.38770K562RPS19
NDUFA4ENSG00000189043.53078.695101306.941401.236004.098402.55640K562SF1
NDUFA4ENSG00000189043.53424.519004023.35030-0.232502.334401.55040K562SF3B4
NDUFA4ENSG00000189043.51415.476301883.51770-0.412102.619901.39310K562SLBP
NDUFA4ENSG00000189043.53703.248304504.71280-0.282603.054502.31470K562SRSF1
NDUFA4ENSG00000189043.52437.532703260.40320-0.419605.976803.68980K562SRSF9
NDUFA4ENSG00000189043.53389.943404558.76210-0.427404.478103.57250K562TARDBP
NDUFA4ENSG00000189043.53586.002704397.51990-0.294303.189602.30140K562TIA1
NDUFA4ENSG00000189043.52555.912704511.22630-0.8197012.049709.06850K562TUFM
NDUFA4ENSG00000189043.52027.607403029.23230-0.5792015.9105014.35280K562UPF1
NDUFA4ENSG00000189043.52144.355102592.00730-0.273502.516801.67930K562WDR3
NDUFA4ENSG00000189043.56073.718407753.62410-0.352303.901802.84500K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NDUFA4 is not available on ENCORE database.





4 RBPs can affect the splicing of NDUFA4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENDUFA4ENSG00000189043.5chr7-109784341097857010977730109777741097964210979883-0.122000.000000.00000excludedK562AQR
SENDUFA4ENSG00000189043.5chr7-109784341097852310977716109777741097964210979883-0.057000.000000.00000excludedK562U2AF1
SENDUFA4ENSG00000189043.5chr7-109784341097857010977493109777741097964210979883-0.057000.000000.00000excludedK562TARDBP
A3SSNDUFA4ENSG00000189043.5chr7-1097771610977923109777161097777410979642109798830.202000.001190.00812longerK562AQR
MXENDUFA4ENSG00000189043.5chr7-1097771610977774109784341097852310971577109733191097964210979883-0.066000.011720.071992includedK562AQR
MXENDUFA4ENSG00000189043.5chr7-10977716109777741097843410978523109715771097331910979642109798830.109000.000010.001151includedHepG2SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NDUFA4 is not avaliable on ENCORE database.