LSM4

General Information

Gene Name : LSM4
Gene ID : ENSG00000130520.10
Essential Gene : Yes

Functions

Splicing regulation
Spliceosome

Localization(RBPImage: LSM4)

Nuclei
Nucleoplasm
Mutually Exclusive from Nucleolus
Cytoplasm
Compartment/Organelle
P bodies
Cytosolic
Nuclear release mitosis

Domains (AlphaFold: LSM4)

No checked domain (RRM, ZNF, KH, Helicase, Nuclease, dRBM or PUM_HD)

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LSM4	ENSG00000130520.10	37.40	58.91	48.16	ENCSR000AEF
HepG2	LSM4	ENSG00000130520.10	95.80	68.51	82.16	ENCSR985KAT
K562	LSM4	ENSG00000130520.10	146.74	84.68	115.71	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

LSM4: Click to RBP Image Database

Nuclei

Nucleoplasm

Mutually Exclusive from Nucleolus

Cytoplasm

Compartment/Organelle

P bodies

Cytosolic

Nuclear release mitosis

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LSM4 is not avaliable on ENCORE database.

Proteins bound to RNA

LSM4 RNA is bound by 23 proteins.

eCLIP assay for LSM4 is not avaliable on ENCORE database.

23 proteins are bound to LSM4 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	18417926	18417974	-	3'-UTR,intron-Distal	4.27910	35.50904	K562	PABPC4
chr19	18420604	18420656	-	3'-UTR,CDS,intron-Distal	3.68722	6.91608	HepG2	YBX3
chr19	18418018	18418085	-	3'-UTR,intron-Distal	3.60451	10.23650	HepG2	LARP4
chr19	18418348	18418361	-	3'-UTR,CDS,intron-Distal	5.76531	15.95720	K562	LIN28B
chr19	18418271	18418276	-	3'-UTR,intron-Distal	3.23577	33.01451	K562	YBX3
chr19	18420661	18420672	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.30731	5.27773	HepG2	YBX3
chr19	18418109	18418146	-	3'-UTR,intron-Distal	5.79390	31.78296	HepG2	SUB1
chr19	18418236	18418239	-	3'-UTR,intron-Distal	3.16525	29.04523	K562	YBX3
chr19	18418019	18418088	-	3'-UTR,intron-Distal	4.55837	44.75609	K562	NOLC1
chr19	18418306	18418314	-	3'-UTR,CDS,intron-Distal	5.61160	12.55096	K562	LIN28B
chr19	18417779	18417812	-	3'-UTR,intron-Distal	4.39093	11.67007	K562	NOLC1
chr19	18418316	18418358	-	3'-UTR,CDS,intron-Distal	4.73787	5.18898	HepG2	LARP4
chr19	18418179	18418278	-	3'-UTR,CDS,intron-Distal	5.36957	9.69074	K562	METAP2
chr19	18417813	18417907	-	3'-UTR,intron-Distal	3.35329	36.18148	K562	PABPC4
chr19	18418324	18418352	-	3'-UTR,CDS,intron-Distal	3.22802	7.06014	K562	DDX55
chr19	18417906	18418009	-	3'-UTR,intron-Distal	4.30168	41.48024	K562	UPF1
chr19	18418314	18418348	-	3'-UTR,CDS,intron-Distal	6.68814	30.42321	K562	LIN28B
chr19	18417874	18417889	-	3'-UTR,intron-Distal	3.82067	13.23945	HepG2	SUB1
chr19	18417975	18418075	-	3'-UTR,intron-Distal	3.37031	10.33412	HepG2	DDX55
chr19	18420648	18420657	-	3'-UTR,CDS,intron-Distal	3.76073	37.38644	K562	YBX3
chr19	18417824	18417905	-	3'-UTR,intron-Distal	6.84028	77.48169	K562	LIN28B
chr19	18417818	18417900	-	3'-UTR,intron-Distal	3.03336	6.88659	HepG2	LARP4
chr19	18418019	18418026	-	3'-UTR,intron-Distal	6.64835	37.49428	HepG2	SUB1
chr19	18417961	18418018	-	3'-UTR,intron-Distal	3.02569	4.90844	HepG2	LARP4
chr19	18417907	18417925	-	3'-UTR,intron-Distal	3.88269	4.33455	K562	LIN28B
chr19	18420595	18420620	-	3'-UTR,CDS,intron-Distal	3.22144	20.22826	K562	YBX3
chr19	18417754	18417813	-	3'-UTR,intron-Distal	3.29673	21.27270	K562	PABPC4
chr19	18418072	18418116	-	3'-UTR,intron-Distal	4.54177	18.02358	K562	TIA1
chr19	18417832	18417904	-	3'-UTR,intron-Distal	4.02386	5.39608	HepG2	LIN28B
chr19	18417760	18417779	-	3'-UTR,intron-Distal	4.93845	14.65778	K562	NOLC1
chr19	18417755	18417813	-	3'-UTR,intron-Distal	6.61206	400.00000	HepG2	SUB1
chr19	18417974	18418081	-	3'-UTR,intron-Distal	5.02734	400.00000	K562	PABPC4
chr19	18420666	18420671	-	3'-UTR,CDS,intron-Distal	4.60437	400.00000	K562	YBX3
chr19	18418026	18418087	-	3'-UTR,intron-Distal	8.06233	400.00000	HepG2	SUB1
chr19	18420620	18420639	-	3'-UTR,CDS,intron-Distal	3.89164	30.16780	K562	YBX3
chr19	18420661	18420666	-	3'-UTR,CDS,intron-Distal	4.24213	85.05280	K562	YBX3
chr19	18418001	18418019	-	3'-UTR,intron-Distal	6.28651	46.13396	HepG2	SUB1
chr19	18418302	18418365	-	3'-UTR,CDS,intron-Distal	3.07128	7.77510	K562	HNRNPM
chr19	18417979	18418001	-	3'-UTR,intron-Distal	5.11521	16.64789	HepG2	SUB1
chr19	18418099	18418145	-	3'-UTR,intron-Distal	5.25550	8.84160	K562	NOLC1
chr19	18418239	18418264	-	3'-UTR,intron-Distal	3.06754	32.75291	K562	YBX3
chr19	18417919	18417961	-	3'-UTR,intron-Distal	3.82747	3.81620	HepG2	LARP4
chr19	18418081	18418140	-	3'-UTR,intron-Distal	4.05929	13.61376	K562	PABPC4
chr19	18417750	18417835	-	3'-UTR,intron-Distal	4.86046	7.39978	HepG2	UPF1
chr19	18418264	18418271	-	3'-UTR,intron-Distal	3.33776	33.78685	K562	YBX3
chr19	18418294	18418360	-	3'-UTR,CDS,intron-Distal	3.11603	3.92909	K562	GRWD1
chr19	18417925	18417967	-	3'-UTR,intron-Distal	3.26703	4.65294	K562	LIN28B
chr19	18420657	18420660	-	3'-UTR,CDS,intron-Distal	3.61530	31.75786	K562	YBX3
chr19	18433830	18433895	-	5'-UTR,intron-Distal,intron-Proximal	3.47553	4.23624	K562	EIF3G
chr19	18433836	18433892	-	5'-UTR,intron-Distal,intron-Proximal	4.27322	5.72235	K562	GEMIN5
chr19	18433827	18433849	-	5'-UTR,CDS,intron-Distal	6.53114	62.75264	K562	DDX3X
chr19	18433827	18433895	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.07627	6.71989	K562	DHX30
chr19	18433849	18433888	-	5'-UTR,intron-Distal,intron-Proximal	7.84013	63.11350	K562	DDX3X
chr19	18433826	18433900	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.81326	48.76100	HepG2	DDX3X
chr19	18433828	18433903	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.03021	9.04913	K562	DROSHA
chr19	18423412	18423512	-	CDS,intron-Distal,intron-Proximal	4.06361	8.14338	K562	ZNF800
chr19	18423430	18423435	-	CDS,intron-Distal	4.74129	33.97712	K562	YBX3
chr19	18426849	18426876	-	CDS,intron-Distal,intron-Proximal	5.24875	5.17878	K562	DROSHA
chr19	18423415	18423430	-	CDS,intron-Distal	4.61611	400.00000	K562	YBX3
chr19	18423494	18423513	-	CDS,intron-Distal,intron-Proximal	4.04026	59.94665	K562	DDX3X
chr19	18426833	18426863	-	CDS,intron-Distal,intron-Proximal	3.26139	8.95782	K562	YBX3
chr19	18423412	18423513	-	CDS,intron-Distal,intron-Proximal	3.77176	3.05347	HepG2	UCHL5
chr19	18423413	18423415	-	CDS,intron-Distal,intron-Proximal	4.69675	400.00000	K562	YBX3
chr19	18423413	18423417	-	CDS,intron-Distal,intron-Proximal	3.17445	3.89258	HepG2	YBX3
chr19	18423442	18423494	-	CDS,intron-Distal	3.79733	58.32135	K562	DDX3X
chr19	18423453	18423491	-	CDS,intron-Distal	3.40889	14.33027	K562	YBX3
chr19	18423435	18423446	-	CDS,intron-Distal	4.58876	33.69045	K562	YBX3
chr19	18420280	18420365	-	CDS,intron-Distal	3.49380	4.34492	K562	XRN2
chr19	18421002	18421087	-	CDS,intron-Distal,intron-Proximal	3.52731	6.69182	K562	AQR
chr19	18426867	18426876	-	CDS,intron-Distal,intron-Proximal	5.34815	49.70988	K562	DDX3X
chr19	18423343	18423415	-	CDS,intron-Distal,intron-Proximal	3.90715	7.16374	K562	AQR
chr19	18423496	18423512	-	CDS,intron-Distal	3.57085	10.92738	K562	YBX3
chr19	18423498	18423512	-	CDS,intron-Distal	3.36697	3.73423	K562	UCHL5
chr19	18426860	18426877	-	CDS,intron-Distal,intron-Proximal	5.90108	18.21641	HepG2	DDX3X
chr19	18426832	18426867	-	CDS,intron-Distal,intron-Proximal	4.68896	75.29385	K562	DDX3X
chr19	18423407	18423463	-	CDS,intron-Distal,intron-Proximal	3.32703	6.51943	K562	PUM1
chr19	18423257	18423340	-	intron-Distal,intron-Proximal	3.62363	4.41130	K562	AQR
chr19	18423265	18423326	-	intron-Distal,intron-Proximal	3.01372	3.40058	K562	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for LSM4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LSM4 is not available on ENCORE database.
110 RBPs can affect the levels of LSM4.

The Knockdown/knockout RNA-Seq assay for LSM4 is not available on ENCORE database.

110 RBPs can affect the gene expression of LSM4 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LSM4	ENSG00000130520.6	1510.03680	1080.21470	0.48320	2.99590	2.01330	HepG2	ABCF1
LSM4	ENSG00000130520.6	841.37290	1042.43320	-0.30910	3.10530	2.29810	HepG2	AKAP8L
LSM4	ENSG00000130520.6	837.81120	1228.28690	-0.55200	4.85070	3.82390	HepG2	ASCC1
LSM4	ENSG00000130520.6	921.47120	1478.11590	-0.68170	14.07990	12.74270	HepG2	AUH
LSM4	ENSG00000130520.6	339.74200	662.85100	-0.96420	7.01600	5.66260	HepG2	BCLAF1
LSM4	ENSG00000130520.6	516.17450	808.92380	-0.64810	4.44380	2.90260	HepG2	BUD13
LSM4	ENSG00000130520.6	266.47490	601.29450	-1.17410	15.95990	14.37770	HepG2	CALR
LSM4	ENSG00000130520.6	915.93910	1204.00020	-0.39450	2.18830	1.33010	HepG2	CCAR1
LSM4	ENSG00000130520.6	742.56780	1166.96320	-0.65220	6.48560	5.33610	HepG2	CIRBP
LSM4	ENSG00000130520.6	607.16180	1037.30430	-0.77270	16.62860	15.29170	HepG2	CKAP4
LSM4	ENSG00000130520.6	868.04370	1156.29220	-0.41370	4.84820	4.04120	HepG2	CELF1
LSM4	ENSG00000130520.6	1440.08590	1243.23830	0.21200	2.32960	1.64160	HepG2	DAZAP1
LSM4	ENSG00000130520.6	423.36660	620.06760	-0.55050	4.37730	3.54380	HepG2	DDX21
LSM4	ENSG00000130520.6	793.93980	1422.00560	-0.84080	10.25050	9.11290	HepG2	DDX3X
LSM4	ENSG00000130520.6	561.92390	792.20920	-0.49550	3.98620	2.44670	HepG2	DDX47
LSM4	ENSG00000130520.6	549.86900	750.23350	-0.44830	2.36820	1.64660	HepG2	DDX55
LSM4	ENSG00000130520.6	785.58010	1221.62880	-0.63700	5.35990	4.52610	HepG2	DDX6
LSM4	ENSG00000130520.6	269.05250	570.97170	-1.08550	9.89270	7.90930	HepG2	AGO1
LSM4	ENSG00000130520.6	701.96650	1174.28560	-0.74230	7.90260	6.93630	HepG2	EIF2S1
LSM4	ENSG00000130520.6	313.58000	540.04000	-0.78420	3.31380	2.33030	HepG2	EIF3D
LSM4	ENSG00000130520.6	809.12130	1297.67720	-0.68150	6.39090	5.41980	HepG2	EIF4A3
LSM4	ENSG00000130520.6	511.39590	1263.55940	-1.30500	15.61450	14.06450	HepG2	EIF4B
LSM4	ENSG00000130520.6	770.64790	1226.58230	-0.67050	11.65250	10.16950	HepG2	EIF4G1
LSM4	ENSG00000130520.6	1235.81450	1697.11380	-0.45760	7.88200	6.95620	HepG2	ETF1
LSM4	ENSG00000130520.6	509.07390	1090.65360	-1.09920	7.03450	5.86640	HepG2	FIP1L1
LSM4	ENSG00000130520.6	454.19780	919.53580	-1.01760	15.70980	13.90590	HepG2	FUBP3
LSM4	ENSG00000130520.6	871.32500	1214.62590	-0.47920	3.59160	2.83750	HepG2	G3BP1
LSM4	ENSG00000130520.6	1010.63820	1289.57750	-0.35160	2.38940	1.56370	HepG2	G3BP2
LSM4	ENSG00000130520.6	326.10090	515.44900	-0.66050	3.65450	2.37310	HepG2	GRSF1
LSM4	ENSG00000130520.6	702.77120	990.60190	-0.49530	6.98870	5.52630	HepG2	HDGF
LSM4	ENSG00000130520.6	772.17600	1142.60040	-0.56530	8.58490	7.11260	HepG2	HNRNPA2B1
LSM4	ENSG00000130520.6	953.12460	1132.47680	-0.24870	2.44310	1.80560	HepG2	HNRNPL
LSM4	ENSG00000130520.6	255.90910	752.21590	-1.55550	12.58790	10.81000	HepG2	HNRNPM
LSM4	ENSG00000130520.6	919.18030	1234.61440	-0.42560	3.07360	2.36660	HepG2	IGF2BP2
LSM4	ENSG00000130520.6	675.46560	1241.86020	-0.87850	8.40580	6.57110	HepG2	KHSRP
LSM4	ENSG00000130520.6	1027.22540	1309.90000	-0.35070	2.24780	1.65430	HepG2	MAGOH
LSM4	ENSG00000130520.6	1026.75330	1317.20850	-0.35940	2.14720	1.58730	HepG2	MATR3
LSM4	ENSG00000130520.6	622.68240	882.24580	-0.50270	3.22540	2.35470	HepG2	MSI2
LSM4	ENSG00000130520.6	515.46620	1348.21760	-1.38710	23.81070	22.07390	HepG2	NCBP2
LSM4	ENSG00000130520.6	389.34160	689.22750	-0.82390	3.40160	2.18070	HepG2	NONO
LSM4	ENSG00000130520.6	287.35570	508.97050	-0.82470	4.48170	3.33530	HepG2	PABPC1
LSM4	ENSG00000130520.6	415.05930	1200.59050	-1.53240	27.87470	25.65490	HepG2	PABPC4
LSM4	ENSG00000130520.6	549.11240	1103.90900	-1.00740	24.10060	22.60680	HepG2	PCBP1
LSM4	ENSG00000130520.6	275.79660	698.29950	-1.34020	3.88110	2.65730	HepG2	PCBP2
LSM4	ENSG00000130520.6	267.02160	578.40550	-1.11510	9.23720	7.85870	HepG2	PRPF8
LSM4	ENSG00000130520.6	647.68950	1123.28490	-0.79430	16.05290	14.94440	HepG2	PTBP1
LSM4	ENSG00000130520.6	880.39960	1176.82790	-0.41870	3.71550	3.03610	HepG2	PUF60
LSM4	ENSG00000130520.6	952.21630	1249.27410	-0.39170	5.89610	5.09670	HepG2	PUM1
LSM4	ENSG00000130520.6	824.41470	1248.34960	-0.59860	8.01930	6.90390	HepG2	PUM2
LSM4	ENSG00000130520.6	651.80980	1056.93640	-0.69740	13.06020	11.89210	HepG2	PUS1
LSM4	ENSG00000130520.6	598.30140	1216.51080	-1.02380	21.21570	19.72130	HepG2	QKI
LSM4	ENSG00000130520.6	255.34760	673.50020	-1.39920	4.20760	3.34730	HepG2	RAVER1
LSM4	ENSG00000130520.6	799.47290	1118.00930	-0.48380	2.06020	1.30570	HepG2	RBM15
LSM4	ENSG00000130520.6	401.05770	1104.07480	-1.46100	32.87340	30.76450	HepG2	RBM25
LSM4	ENSG00000130520.6	969.74780	1164.31790	-0.26380	2.41510	1.83390	HepG2	RECQL
LSM4	ENSG00000130520.6	227.48900	572.12950	-1.33050	10.92150	9.51820	HepG2	RRP9
LSM4	ENSG00000130520.6	994.86400	507.39820	0.97130	18.99590	17.52790	HepG2	SAFB2
LSM4	ENSG00000130520.6	481.16600	1007.31320	-1.06590	9.86770	8.53370	HepG2	SF3A3
LSM4	ENSG00000130520.6	715.86460	1169.45550	-0.70810	12.02830	10.93300	HepG2	SF3B4
LSM4	ENSG00000130520.6	902.07150	1128.43420	-0.32300	3.74850	2.95210	HepG2	SLBP
LSM4	ENSG00000130520.6	765.86020	591.71380	0.37210	3.94390	3.19830	HepG2	SMN1
LSM4	ENSG00000130520.6	1094.47120	1602.08960	-0.54970	11.04760	10.22690	HepG2	SRFBP1
LSM4	ENSG00000130520.6	1040.12460	1220.67030	-0.23090	2.09100	1.66390	HepG2	SRSF1
LSM4	ENSG00000130520.6	764.09800	922.75950	-0.27220	2.46650	1.80540	HepG2	SRSF7
LSM4	ENSG00000130520.6	250.83440	993.09050	-1.98520	70.51350	68.50740	HepG2	SRSF9
LSM4	ENSG00000130520.6	318.04500	629.50430	-0.98500	2.50170	1.36100	HepG2	SUB1
LSM4	ENSG00000130520.6	1094.46140	1321.45940	-0.27190	3.07740	2.42830	HepG2	SUCLG1
LSM4	ENSG00000130520.6	801.11810	1097.21900	-0.45380	5.37090	4.63270	HepG2	TAF15
LSM4	ENSG00000130520.6	240.27370	646.17750	-1.42730	4.47580	3.58150	HepG2	TARDBP
LSM4	ENSG00000130520.6	568.51580	1008.15980	-0.82650	12.72730	10.96370	HepG2	TIA1
LSM4	ENSG00000130520.6	611.88580	932.72250	-0.60820	2.78030	2.14980	HepG2	U2AF1
LSM4	ENSG00000130520.6	718.35720	893.33450	-0.31450	3.04220	2.31750	HepG2	UPF1
LSM4	ENSG00000130520.6	678.02300	918.20980	-0.43750	4.83260	3.48780	HepG2	UTP18
LSM4	ENSG00000130520.6	562.18360	862.47670	-0.61740	8.55520	7.59550	HepG2	UTP3
LSM4	ENSG00000130520.6	715.50810	982.49450	-0.45750	6.80000	6.04170	HepG2	ZNF622
LSM4	ENSG00000130520.6	4403.51670	3145.15450	0.48540	13.41870	12.27030	K562	AGGF1
LSM4	ENSG00000130520.6	4479.89630	3456.22210	0.37420	4.34590	3.05310	K562	AKAP8
LSM4	ENSG00000130520.6	5095.56700	3272.71830	0.63870	10.35980	8.99110	K562	AKAP8L
LSM4	ENSG00000130520.6	2359.26890	4530.32690	-0.94130	18.90680	17.54030	K562	AQR
LSM4	ENSG00000130520.6	4220.59300	3433.94960	0.29750	4.39530	3.21560	K562	ATP5C1
LSM4	ENSG00000130520.6	1022.09790	1380.14570	-0.43330	3.50790	2.52580	K562	BOP1
LSM4	ENSG00000130520.6	1432.75110	1960.70590	-0.45260	3.74680	2.04000	K562	BUD13
LSM4	ENSG00000130520.6	2389.80240	3455.40550	-0.53200	3.01050	1.89680	K562	CNOT7
LSM4	ENSG00000130520.6	1158.22970	1467.53260	-0.34150	2.52100	1.77120	K562	CPSF6
LSM4	ENSG00000130520.6	1565.67560	1940.47610	-0.30960	2.48480	1.62240	K562	EFTUD2
LSM4	ENSG00000130520.6	1552.04260	2077.24400	-0.42050	3.15970	2.04850	K562	EIF3D
LSM4	ENSG00000130520.6	1735.67920	2467.95530	-0.50780	6.27590	5.04820	K562	EIF4A3
LSM4	ENSG00000130520.6	1296.39840	1640.94190	-0.34000	3.33500	1.56010	K562	FASTKD2
LSM4	ENSG00000130520.6	2514.86440	2023.48250	0.31350	2.70490	1.86620	K562	FIP1L1
LSM4	ENSG00000130520.6	1331.70430	1958.22240	-0.55630	5.59940	3.88910	K562	FKBP4
LSM4	ENSG00000130520.6	1040.72970	1493.09870	-0.52070	5.32700	4.13560	K562	FMR1
LSM4	ENSG00000130520.6	2527.89270	2046.34070	0.30480	2.81440	1.36870	K562	G3BP1
LSM4	ENSG00000130520.6	719.64390	1712.12580	-1.25040	17.27690	15.11570	K562	G3BP2
LSM4	ENSG00000130520.6	1503.57270	1945.50020	-0.37170	2.99840	1.50950	K562	GEMIN5
LSM4	ENSG00000130520.6	2227.73860	3072.51750	-0.46380	4.38710	2.95450	K562	GLRX3
LSM4	ENSG00000130520.6	2927.39920	3568.64160	-0.28580	2.88950	1.79300	K562	HNRNPA1
LSM4	ENSG00000130520.6	905.79560	2254.15260	-1.31530	37.31680	35.19740	K562	HNRNPC
LSM4	ENSG00000130520.6	3387.40370	3951.99210	-0.22240	2.44810	1.60740	K562	HNRNPU
LSM4	ENSG00000130520.6	2769.24300	2140.16060	0.37170	2.50350	1.54360	K562	IGF2BP2
LSM4	ENSG00000130520.6	4601.97390	3473.02320	0.40600	4.64920	3.53220	K562	KIF1C
LSM4	ENSG00000130520.6	632.61710	1196.33330	-0.91920	6.58930	5.07960	K562	KRR1
LSM4	ENSG00000130520.6	1515.08510	2183.88200	-0.52750	6.71330	4.41420	K562	LARP7
LSM4	ENSG00000130520.6	4019.57870	3324.65860	0.27370	2.51690	1.50640	K562	MAK16
LSM4	ENSG00000130520.6	4619.87750	3890.68400	0.24770	2.26370	1.45360	K562	MBNL1
LSM4	ENSG00000130520.6	2610.45020	3230.40540	-0.30740	3.06060	2.21270	K562	MTPAP
LSM4	ENSG00000130520.6	1924.18970	2464.43510	-0.35700	4.21670	2.68480	K562	NCBP2
LSM4	ENSG00000130520.6	3051.05480	3588.96750	-0.23430	2.07490	1.41780	K562	NSUN2
LSM4	ENSG00000130520.6	1929.88000	3319.63830	-0.78250	6.23260	4.37030	K562	PABPC1
LSM4	ENSG00000130520.6	2290.11590	2869.25090	-0.32530	2.26980	1.51680	K562	PCBP3
LSM4	ENSG00000130520.6	3455.07970	2297.14920	0.58880	7.97560	6.42110	K562	PPIG
LSM4	ENSG00000130520.6	4507.90420	3245.33500	0.47400	5.89010	5.13440	K562	PUS1
LSM4	ENSG00000130520.6	4568.14910	3162.34160	0.53050	11.76630	10.55290	K562	RBM15
LSM4	ENSG00000130520.6	1528.71810	2027.46720	-0.40740	3.71930	2.02960	K562	SDAD1
LSM4	ENSG00000130520.6	2005.97970	3541.84570	-0.82020	16.10760	14.27010	K562	SF3A3
LSM4	ENSG00000130520.6	951.99960	1332.43680	-0.48500	3.64100	2.51700	K562	SF3B1
LSM4	ENSG00000130520.6	1096.00510	1408.46070	-0.36190	3.27310	1.51850	K562	SND1
LSM4	ENSG00000130520.6	2999.64120	3628.73810	-0.27470	2.83940	1.89420	K562	SRPK2
LSM4	ENSG00000130520.6	1966.71110	2504.94830	-0.34900	4.31090	2.39040	K562	SRSF9
LSM4	ENSG00000130520.6	1294.26920	1827.75710	-0.49790	4.45650	3.14220	K562	SUPV3L1
LSM4	ENSG00000130520.6	2828.12810	2168.39240	0.38310	3.48060	2.68320	K562	TARDBP
LSM4	ENSG00000130520.6	1288.54060	1784.08920	-0.46940	4.94160	2.77200	K562	TBRG4
LSM4	ENSG00000130520.6	2532.60130	2091.64320	0.27590	2.56700	1.78190	K562	TIA1
LSM4	ENSG00000130520.6	1336.10550	1943.98090	-0.54100	5.43700	4.08270	K562	TIAL1
LSM4	ENSG00000130520.6	1216.44640	1658.93480	-0.44760	3.44850	2.20010	K562	U2AF1
LSM4	ENSG00000130520.6	1355.35890	1713.53820	-0.33830	3.54070	2.63170	K562	U2AF2
LSM4	ENSG00000130520.6	2845.58530	3805.48240	-0.41940	3.57400	2.76540	K562	UPF1
LSM4	ENSG00000130520.6	2242.53430	3256.19190	-0.53810	2.82940	1.94280	K562	WDR3
LSM4	ENSG00000130520.6	4163.71030	5103.61060	-0.29360	2.79180	1.92420	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LSM4 is not available on ENCORE database.

2 RBPs can affect the splicing of LSM4 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	LSM4	ENSG00000130520.6	chr19	-	18420919	18421024			18420487	18420671	18423470	18423512	-0.32400	0.00516	0.06370	excluded	K562	PUS1
A3SS	LSM4	ENSG00000130520.6	chr19	-	18420919	18421059			18420919	18421024	18423413	18423555	0.40200	0.00612	0.03452	longer	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LSM4

General Information

Functions

Localization(RBPImage: LSM4)

Domains (AlphaFold: LSM4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LSM4 is not avaliable on ENCORE database.

23 proteins are bound to LSM4 RNA:

eCLIP assay for LSM4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LSM4 is not available on ENCORE database.

110 RBPs can affect the gene expression of LSM4 :

The Knockdown/knockout RNA-Seq assay for LSM4 is not available on ENCORE database.

2 RBPs can affect the splicing of LSM4 :

The Knockdown/knockout RNA-Seq assay for LSM4 is not avaliable on ENCORE database.