LINC01001

General Information

Gene Name       : LINC01001
Gene ID             : ENSG00000230724.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LINC01001)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LINC01001ENSG00000230724.97.4910.238.86ENCSR000AEF
HepG2LINC01001ENSG00000230724.99.018.038.52ENCSR985KAT
K562LINC01001ENSG00000230724.944.1135.8339.97ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LINC01001 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on LINC01001 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for LINC01001 is not avaliable on ENCORE database.






NO known proteins are bound to LINC01001 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for LINC01001 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LINC01001 is not available on ENCORE database.

  • 110 RBPs can affect the levels of LINC01001.  








The Knockdown/knockout RNA-Seq assay for LINC01001 is not available on ENCORE database.





110 RBPs can affect the gene expression of LINC01001 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LINC01001ENSG00000230724.5639.75650467.954200.451103.014401.97640HepG2ADAR
LINC01001ENSG00000230724.5189.58390316.20560-0.738003.623503.02560HepG2AKAP1
LINC01001ENSG00000230724.5822.823001113.28060-0.436203.056401.96420HepG2AKAP8
LINC01001ENSG00000230724.51427.005501034.013800.464602.958301.94930HepG2CCAR1
LINC01001ENSG00000230724.5836.42600606.050900.464702.169001.55080HepG2CPSF6
LINC01001ENSG00000230724.5686.31300471.169900.542505.772604.78930HepG2DNAJC21
LINC01001ENSG00000230724.5647.04910467.094700.470104.090703.32880HepG2DNAJC2
LINC01001ENSG00000230724.5785.71500250.088201.6515026.0447024.35550HepG2EIF2S1
LINC01001ENSG00000230724.5361.64730521.98910-0.529402.997002.06110HepG2EIF3D
LINC01001ENSG00000230724.5562.11030276.318201.024409.278708.11590HepG2EIF4A3
LINC01001ENSG00000230724.5495.91290269.146600.881605.517804.56920HepG2EIF4B
LINC01001ENSG00000230724.51008.26340774.303800.380804.066903.36260HepG2ETF1
LINC01001ENSG00000230724.51304.20770607.152501.102902.903801.86190HepG2FTO
LINC01001ENSG00000230724.5846.62830348.527101.2804015.7323013.92710HepG2FUBP3
LINC01001ENSG00000230724.5477.73560278.971100.776005.653204.68650HepG2FXR1
LINC01001ENSG00000230724.5582.38720258.693201.1706012.3977011.04370HepG2G3BP1
LINC01001ENSG00000230724.5638.07420274.758001.215509.265907.62670HepG2G3BP2
LINC01001ENSG00000230724.51096.84100686.923100.675006.009805.09210HepG2GPKOW
LINC01001ENSG00000230724.5796.17240475.684800.743007.918106.90850HepG2HNRNPA1
LINC01001ENSG00000230724.5875.78260677.316300.370603.418802.39500HepG2HNRNPA2B1
LINC01001ENSG00000230724.5969.05000651.317800.573104.364803.48660HepG2HNRNPF
LINC01001ENSG00000230724.5632.85250262.168301.2713015.8925014.35820HepG2HNRNPK
LINC01001ENSG00000230724.5902.54700671.415400.426705.144804.24900HepG2HNRNPL
LINC01001ENSG00000230724.5928.48390655.550900.502103.304802.62270HepG2HNRNPLL
LINC01001ENSG00000230724.5419.45080262.922700.673803.365702.62760HepG2IGF2BP2
LINC01001ENSG00000230724.5756.58980536.918300.494704.937303.98010HepG2ILF2
LINC01001ENSG00000230724.5580.76540264.517501.134508.607506.75850HepG2KHSRP
LINC01001ENSG00000230724.5685.47820559.816600.292102.507401.53480HepG2KIF1C
LINC01001ENSG00000230724.5315.07360435.08330-0.465602.735201.60800HepG2LARP7
LINC01001ENSG00000230724.5687.08720880.76630-0.358302.955702.12060HepG2MSI2
LINC01001ENSG00000230724.51167.29640668.757500.803505.221603.86380HepG2MTPAP
LINC01001ENSG00000230724.5613.31990287.188601.0945010.944909.72610HepG2NCBP2
LINC01001ENSG00000230724.51067.47300581.331300.876709.569808.23920HepG2NSUN2
LINC01001ENSG00000230724.5847.53880284.622801.574103.400101.36980HepG2NUFIP2
LINC01001ENSG00000230724.5552.90410255.652301.1127010.525109.13710HepG2PABPC4
LINC01001ENSG00000230724.5433.17660260.687300.732507.117606.21850HepG2PCBP1
LINC01001ENSG00000230724.5646.75630468.823300.464102.590801.87620HepG2PPIL4
LINC01001ENSG00000230724.5444.71730265.254200.745407.184406.38370HepG2PTBP1
LINC01001ENSG00000230724.5690.10410287.287301.2642020.7038019.22270HepG2QKI
LINC01001ENSG00000230724.5286.70670475.09800-0.728603.367802.59210HepG2RAVER1
LINC01001ENSG00000230724.5359.49660647.16570-0.8482010.9804010.09820HepG2RBM22
LINC01001ENSG00000230724.5512.59610260.727700.9752010.530309.27400HepG2RBM25
LINC01001ENSG00000230724.5503.94030295.206500.771407.794706.96850HepG2NELFE
LINC01001ENSG00000230724.5572.19180274.937401.0573015.1064013.84860HepG2RECQL
LINC01001ENSG00000230724.5634.21220468.088300.438102.711502.07210HepG2SAFB2
LINC01001ENSG00000230724.5621.55970276.837601.166803.693502.08200HepG2SF1
LINC01001ENSG00000230724.5978.256901579.26890-0.691002.513401.87160HepG2SF3A3
LINC01001ENSG00000230724.5903.57740648.818100.477703.076302.33310HepG2SF3B1
LINC01001ENSG00000230724.5471.42850276.172600.771405.141504.37750HepG2SF3B4
LINC01001ENSG00000230724.5876.95800668.854100.390704.310103.46270HepG2SLBP
LINC01001ENSG00000230724.5642.65720247.389801.377205.431503.43130HepG2SNRNP200
LINC01001ENSG00000230724.5570.48860688.76940-0.271801.887301.35680HepG2SRSF5
LINC01001ENSG00000230724.5442.04960234.512500.914404.359803.69620HepG2SRSF9
LINC01001ENSG00000230724.5824.43230634.595700.377503.799703.21980HepG2SSB
LINC01001ENSG00000230724.5238.74880355.16900-0.573002.836702.15270HepG2SUPV3L1
LINC01001ENSG00000230724.5687.09660259.090201.4070016.0093014.82540HepG2TAF15
LINC01001ENSG00000230724.5852.78180639.178500.415902.722202.00300HepG2TARDBP
LINC01001ENSG00000230724.5572.80510238.079101.266506.200004.95560HepG2TIA1
LINC01001ENSG00000230724.5515.98850931.10440-0.851608.048306.97790HepG2U2AF1
LINC01001ENSG00000230724.5479.20040325.166700.559302.489301.54070HepG2UPF2
LINC01001ENSG00000230724.51059.644301352.19760-0.351704.437503.70740HepG2UTP3
LINC01001ENSG00000230724.5605.04160741.76930-0.293902.596701.94280HepG2ZC3H8
LINC01001ENSG00000230724.55434.652704356.471600.318903.287702.57350K562AKAP8L
LINC01001ENSG00000230724.51747.448402889.50630-0.725605.363103.55560K562APOBEC3C
LINC01001ENSG00000230724.51259.367002095.41220-0.734502.479201.91750K562AQR
LINC01001ENSG00000230724.51542.887802019.63020-0.388504.248403.27570K562CPSF6
LINC01001ENSG00000230724.51279.843101843.10130-0.526203.980901.74540K562YBX3
LINC01001ENSG00000230724.52124.912404262.13230-1.0042020.3324018.72290K562DDX47
LINC01001ENSG00000230724.53940.567804687.75590-0.250503.130502.19100K562DKC1
LINC01001ENSG00000230724.5989.991701298.41340-0.391303.300702.29840K562EFTUD2
LINC01001ENSG00000230724.52398.262201711.131000.486909.970407.62620K562EIF2S1
LINC01001ENSG00000230724.51855.244001465.663400.340004.132002.67060K562EIF4B
LINC01001ENSG00000230724.52855.299003274.70340-0.197702.266001.41230K562EIF4G2
LINC01001ENSG00000230724.51880.499501420.637800.404504.642902.89640K562EWSR1
LINC01001ENSG00000230724.51607.680202055.14880-0.354303.058802.15560K562FMR1
LINC01001ENSG00000230724.51017.88000723.725900.492005.572603.59460K562FUS
LINC01001ENSG00000230724.5779.755901692.49730-1.1181016.1526014.79820K562FXR1
LINC01001ENSG00000230724.5592.026001091.54650-0.882603.496002.68250K562G3BP2
LINC01001ENSG00000230724.51500.126101928.15760-0.362103.418902.53860K562GPKOW
LINC01001ENSG00000230724.51081.384601905.96790-0.817605.906504.79810K562GRSF1
LINC01001ENSG00000230724.52447.765401805.046200.439305.378104.57130K562HNRNPC
LINC01001ENSG00000230724.52188.623101612.044800.441005.069003.46120K562HNRNPF
LINC01001ENSG00000230724.5872.613001605.19700-0.8793011.174208.98800K562HNRNPM
LINC01001ENSG00000230724.51566.739101886.39500-0.267902.726501.83980K562HNRNPU
LINC01001ENSG00000230724.51210.654602645.99840-1.1280024.9406022.78330K562HSPD1
LINC01001ENSG00000230724.52130.750601499.549400.506702.740401.72040K562IGF2BP2
LINC01001ENSG00000230724.52363.895301524.615600.632603.843802.39330K562IGF2BP3
LINC01001ENSG00000230724.51252.205001703.67400-0.444202.946301.41500K562KHDRBS1
LINC01001ENSG00000230724.51213.788501646.64770-0.440002.803801.86280K562KRR1
LINC01001ENSG00000230724.52216.739601748.360700.342303.115801.62150K562LARP7
LINC01001ENSG00000230724.52522.857601831.017400.462304.573302.59920K562LIN28B
LINC01001ENSG00000230724.52310.736301609.845300.521306.502304.07920K562LSM11
LINC01001ENSG00000230724.5969.237601574.41100-0.699902.622901.80470K562MAGOH
LINC01001ENSG00000230724.5648.789001280.15440-0.980508.554506.08580K562NONO
LINC01001ENSG00000230724.52796.237801777.450000.653608.384505.64470K562NUSAP1
LINC01001ENSG00000230724.5707.883401362.25060-0.944405.756403.17620K562PA2G4
LINC01001ENSG00000230724.52709.855801762.390300.620609.629606.91990K562PHF6
LINC01001ENSG00000230724.52816.885701866.610700.593606.575004.08340K562PKM
LINC01001ENSG00000230724.52508.030803364.87020-0.424006.180404.15120K562PNPT1
LINC01001ENSG00000230724.51588.144902215.42020-0.480205.026403.86600K562PPIG
LINC01001ENSG00000230724.5306.645001263.51390-2.0428041.1620038.40310K562PRPF8
LINC01001ENSG00000230724.52756.546001618.450900.7681014.0026011.65070K562PSIP1
LINC01001ENSG00000230724.5956.217101529.75520-0.677902.413301.78610K562PTBP1
LINC01001ENSG00000230724.51440.807103572.92110-1.3102034.6267031.72910K562PUF60
LINC01001ENSG00000230724.52738.731303800.55740-0.472707.887506.00730K562PUM1
LINC01001ENSG00000230724.51912.137301476.809400.372604.163402.94480K562RCC2
LINC01001ENSG00000230724.5438.649101286.79560-1.5526028.1446025.60370K562RPS19
LINC01001ENSG00000230724.51434.884501803.08240-0.329502.336801.42570K562RPS3
LINC01001ENSG00000230724.5508.746001291.63440-1.3442018.2057015.16610K562RRP9
LINC01001ENSG00000230724.51020.532601854.91710-0.8620015.8385013.50130K562SAFB
LINC01001ENSG00000230724.51507.577501917.67670-0.347102.921301.43130K562SDAD1
LINC01001ENSG00000230724.51432.792001834.08200-0.356202.430701.52450K562SF3B1
LINC01001ENSG00000230724.51972.437501399.956900.494503.856402.58330K562SRFBP1
LINC01001ENSG00000230724.53878.750703424.554100.179602.193501.35120K562SRPK2
LINC01001ENSG00000230724.5937.219001499.84490-0.678402.189601.55220K562SRSF1
LINC01001ENSG00000230724.51116.786502087.93840-0.9027020.9715018.82120K562SYNCRIP
LINC01001ENSG00000230724.5897.248101517.56440-0.758202.825902.11190K562TARDBP
LINC01001ENSG00000230724.52037.898701556.657000.388503.064802.07530K562TIAL1
LINC01001ENSG00000230724.52234.388001653.950500.433903.300602.24860K562TRIM56
LINC01001ENSG00000230724.5769.708501091.84910-0.504402.085601.38960K562U2AF2
LINC01001ENSG00000230724.52765.286203196.00820-0.208802.992102.11200K562WDR43
LINC01001ENSG00000230724.51733.076302219.88260-0.357103.711501.57990K562ZNF800
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LINC01001 is not available on ENCORE database.





5 RBPs can affect the splicing of LINC01001 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELINC01001ENSG00000230724.5chr11-135174135860134889134947138046138111-0.107000.009300.09950excludedK562PUS1
SELINC01001ENSG00000230724.5chr11-1351741358601348891349471380461381110.134000.000280.02707includedK562HNRNPUL1
SELINC01001ENSG00000230724.5chr11-135174135860134889134947138046138111-0.126000.000170.00989excludedK562SF3B1
SELINC01001ENSG00000230724.5chr11-135174135860134889134947138046138111-0.132000.000570.09683excludedK562SAFB
SELINC01001ENSG00000230724.5chr11-1348891349471336131337781380461381110.162000.001170.02203includedK562HNRNPC
SELINC01001ENSG00000230724.5chr11-135174135860134889134947138046138111-0.108000.000620.01282excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LINC01001 is not avaliable on ENCORE database.