LDHB

General Information

Gene Name : LDHB
Gene ID : ENSG00000111716.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LDHB)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LDHB	ENSG00000111716.12	1015.50	853.31	934.40	ENCSR000AEF
HepG2	LDHB	ENSG00000111716.12	0.00	0.06	0.03	ENCSR985KAT
K562	LDHB	ENSG00000111716.12	759.48	651.04	705.26	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LDHB is not avaliable on ENCORE database.

Proteins bound to RNA

LDHB RNA is bound by 20 proteins.

eCLIP assay for LDHB is not avaliable on ENCORE database.

20 proteins are bound to LDHB RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	21791286	21791333	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.39804	4.26959	K562	LARP4
chr12	21788375	21788433	-	3'-UTR,intron-Distal	3.30247	29.28483	K562	YBX3
chr12	21807566	21807609	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.45129	10.26114	K562	GEMIN5
chr12	21791286	21791337	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.41400	3.94389	K562	ZNF800
chr12	21788374	21788451	-	3'-UTR,intron-Distal	4.81642	400.00000	K562	PABPC4
chr12	21788397	21788433	-	3'-UTR,intron-Distal	3.11645	3.09884	K562	LIN28B
chr12	21788373	21788390	-	3'-UTR,intron-Distal	6.30705	35.10856	K562	NOLC1
chr12	21788456	21788476	-	3'-UTR,intron-Distal	4.74121	7.45603	K562	RPS3
chr12	21788368	21788395	-	3'-UTR,intron-Distal	9.03024	182.97747	HepG2	SUB1
chr12	21788390	21788406	-	3'-UTR,intron-Distal	4.95720	22.56925	K562	NOLC1
chr12	21788395	21788435	-	3'-UTR,intron-Distal	8.31362	119.96932	HepG2	SUB1
chr12	21788476	21788570	-	3'-UTR,CDS,intron-Distal	3.92935	9.48336	K562	NIPBL
chr12	21788297	21788372	-	3'-UTR,intron-Distal	3.59082	47.74795	K562	PABPC4
chr12	21788318	21788368	-	3'-UTR,intron-Distal	9.98259	163.31964	HepG2	SUB1
chr12	21791285	21791327	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.14900	9.99136	K562	TARDBP
chr12	21788406	21788449	-	3'-UTR,intron-Distal	4.68657	22.68563	K562	NOLC1
chr12	21788322	21788373	-	3'-UTR,intron-Distal	5.67333	34.66616	K562	NOLC1
chr12	21810683	21810692	-	5'-UTR,intron-Distal,intron-Proximal	3.05491	26.51844	K562	DDX3X
chr12	21810692	21810709	-	5'-UTR,intron-Distal	3.37914	31.81724	K562	DDX3X
chr12	21810709	21810720	-	5'-UTR,intron-Distal	3.73854	33.97175	K562	DDX3X
chr12	21810726	21810738	-	5'-UTR,intron-Distal,intron-Proximal	3.74988	23.70739	K562	DDX3X
chr12	21810684	21810766	-	5'-UTR,intron-Distal,intron-Proximal	3.48074	8.81238	K562	GEMIN5
chr12	21796870	21796877	-	CDS,intron-Distal,intron-Proximal	6.06577	10.71230	HepG2	SUB1
chr12	21790063	21790072	-	CDS,intron-Distal	3.23450	16.23621	K562	YBX3
chr12	21790004	21790081	-	CDS,intron-Distal,intron-Proximal	3.56141	5.48666	K562	METAP2
chr12	21788618	21788641	-	CDS,intron-Distal	4.31499	7.05793	K562	RPS3
chr12	21790072	21790085	-	CDS,intron-Distal	4.04365	31.15952	K562	YBX3
chr12	21788581	21788643	-	CDS,intron-Distal	3.07967	5.14064	K562	METAP2
chr12	21796877	21797001	-	CDS,intron-Distal,intron-Proximal	3.20074	5.89894	K562	ZNF800
chr12	21807473	21807542	-	CDS,intron-Distal,intron-Proximal	3.28810	10.41332	K562	GEMIN5
chr12	21799846	21799905	-	CDS,intron-Distal	3.56525	13.10385	K562	LIN28B
chr12	21794892	21795035	-	CDS,intron-Distal	5.26872	51.79901	K562	RPS3
chr12	21790085	21790103	-	CDS,intron-Distal	3.65063	24.50614	K562	YBX3
chr12	21790109	21790128	-	CDS,intron-Distal	4.53813	21.94916	HepG2	SUB1
chr12	21796878	21796946	-	CDS,intron-Distal,intron-Proximal	5.33787	9.54529	K562	GRWD1
chr12	21791370	21791385	-	CDS,intron-Distal	3.56925	8.58776	HepG2	SUB1
chr12	21794962	21795028	-	CDS,intron-Distal	5.36984	48.61341	HepG2	SUB1
chr12	21790069	21790129	-	CDS,intron-Distal,intron-Proximal	3.18799	3.80951	K562	HLTF
chr12	21796953	21797037	-	CDS,intron-Distal,intron-Proximal	3.60038	7.89959	K562	PUM1
chr12	21790063	21790130	-	CDS,intron-Distal,intron-Proximal	3.76998	6.23043	K562	ZNF800
chr12	21794885	21794938	-	CDS,intron-Distal,intron-Proximal	4.55344	5.27753	K562	METAP2
chr12	21788597	21788605	-	CDS,intron-Distal	3.75281	41.60201	K562	YBX3
chr12	21790004	21790006	-	CDS,intron-Distal,intron-Proximal	3.07219	34.18565	K562	YBX3
chr12	21795031	21795057	-	CDS,intron-Distal	4.76425	6.10236	K562	NOLC1
chr12	21788624	21788643	-	CDS,intron-Distal	3.22644	52.37076	K562	YBX3
chr12	21790006	21790063	-	CDS,intron-Distal	4.29367	5.48759	K562	ZNF800
chr12	21788578	21788589	-	CDS,intron-Distal	3.15240	19.75365	K562	YBX3
chr12	21799870	21799951	-	CDS,intron-Distal,intron-Proximal	3.65327	8.79185	K562	ZNF800
chr12	21794960	21795031	-	CDS,intron-Distal	3.21025	8.09979	K562	NOLC1
chr12	21796868	21796890	-	CDS,intron-Distal,intron-Proximal	4.23848	4.73230	K562	NOLC1
chr12	21790104	21790117	-	CDS,intron-Distal	3.04106	12.28923	K562	YBX3
chr12	21807501	21807539	-	CDS,intron-Distal,intron-Proximal	4.68758	8.35382	K562	RPS3
chr12	21807537	21807560	-	CDS,intron-Distal,intron-Proximal	3.27089	21.59568	K562	YBX3
chr12	21796871	21796933	-	CDS,intron-Distal,intron-Proximal	4.55722	20.81138	K562	IGF2BP1
chr12	21796885	21796929	-	CDS,intron-Distal,intron-Proximal	4.39125	6.81198	K562	RPS3
chr12	21795035	21795060	-	CDS,intron-Distal,intron-Proximal	5.78820	8.81873	K562	RPS3
chr12	21807497	21807588	-	CDS,intron-Distal,intron-Proximal	3.03248	3.20832	K562	EIF3G
chr12	21788496	21788603	-	CDS,intron-Distal	3.01624	9.64022	K562	ZNF800
chr12	21791286	21791300	-	CDS,intron-Distal,intron-Proximal	4.81342	20.52083	HepG2	SUB1
chr12	21790009	21790084	-	CDS,intron-Distal	3.31940	8.74839	K562	GRWD1
chr12	21796867	21796885	-	CDS,intron-Distal,intron-Proximal	4.86475	4.78343	K562	RPS3
chr12	21790006	21790014	-	CDS,intron-Distal	3.26443	40.18735	K562	YBX3
chr12	21791327	21791405	-	CDS,intron-Distal,intron-Proximal	3.62304	23.57076	K562	TARDBP
chr12	21796955	21797022	-	CDS,intron-Distal,intron-Proximal	3.50667	11.44884	K562	RPS3
chr12	21791349	21791404	-	CDS,intron-Distal	4.24516	16.05999	K562	RPS3
chr12	21788579	21788618	-	CDS,intron-Distal	4.96948	10.25987	K562	RPS3
chr12	21808732	21808863	-	intron-Distal	3.15283	4.08064	K562	KHSRP
chr12	21794676	21794727	-	intron-Distal	3.69354	3.62418	K562	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for LDHB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LDHB is not available on ENCORE database.
87 RBPs can affect the levels of LDHB.

The Knockdown/knockout RNA-Seq assay for LDHB is not available on ENCORE database.

87 RBPs can affect the gene expression of LDHB :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LDHB	ENSG00000111716.8	0.00000	11.54220	-99999.99999	2.30060	1.41950	HepG2	CCAR1
LDHB	ENSG00000111716.8	10.55720	0.00000	99999.99990	3.13250	2.36610	HepG2	TARDBP
LDHB	ENSG00000111716.8	14.50810	0.00000	99999.99990	4.54460	3.80820	HepG2	UTP3
LDHB	ENSG00000111716.8	14316.84600	17551.48860	-0.29390	2.69600	1.49350	K562	ABCF1
LDHB	ENSG00000111716.8	17126.69420	14850.86610	0.20560	3.77680	3.13210	K562	AGGF1
LDHB	ENSG00000111716.8	20279.85570	15453.06720	0.39210	5.14000	4.23770	K562	AKAP8L
LDHB	ENSG00000111716.8	13132.44970	25367.88450	-0.94990	23.55220	22.02730	K562	AQR
LDHB	ENSG00000111716.8	12083.01510	15069.28360	-0.31860	6.08110	4.01970	K562	BCCIP
LDHB	ENSG00000111716.8	10949.89600	14562.14090	-0.41130	12.81890	10.71570	K562	BCLAF1
LDHB	ENSG00000111716.8	4587.47920	6247.84020	-0.44570	4.15040	3.07680	K562	BOP1
LDHB	ENSG00000111716.8	8802.66830	12226.04860	-0.47390	3.80630	2.08210	K562	BUD13
LDHB	ENSG00000111716.8	3221.31200	6264.76120	-0.95960	9.36250	7.08870	K562	CCAR1
LDHB	ENSG00000111716.8	4526.35020	6643.50130	-0.55360	4.84540	3.81190	K562	CPSF6
LDHB	ENSG00000111716.8	8398.62000	11047.55330	-0.39550	8.14690	6.20200	K562	CSTF2
LDHB	ENSG00000111716.8	29116.23140	34971.73180	-0.26440	2.72210	1.75470	K562	CELF1
LDHB	ENSG00000111716.8	8566.63780	10971.20380	-0.35690	3.88280	2.61940	K562	DDX3X
LDHB	ENSG00000111716.8	14157.13880	17368.35950	-0.29490	3.56880	2.84100	K562	DDX47
LDHB	ENSG00000111716.8	4127.31990	7012.83520	-0.76480	7.27040	4.97910	K562	DHX30
LDHB	ENSG00000111716.8	21007.49460	16628.18180	0.33720	6.77500	5.30780	K562	DKC1
LDHB	ENSG00000111716.8	4766.33500	6736.96370	-0.49920	4.39120	2.66980	K562	DNAJC21
LDHB	ENSG00000111716.8	8289.43380	12308.84480	-0.57030	5.60990	4.28420	K562	EFTUD2
LDHB	ENSG00000111716.8	10056.91770	12050.91210	-0.26100	4.56460	2.98540	K562	EIF2S1
LDHB	ENSG00000111716.8	12326.86840	17340.13030	-0.49230	13.31510	11.91920	K562	EIF2S2
LDHB	ENSG00000111716.8	2507.98860	6372.57080	-1.34530	13.80940	11.60600	K562	EIF3A
LDHB	ENSG00000111716.8	9423.50050	13181.17470	-0.48410	3.67450	2.46670	K562	EIF3D
LDHB	ENSG00000111716.8	8028.68840	11462.19670	-0.51360	7.72320	6.35110	K562	EIF4A3
LDHB	ENSG00000111716.8	21972.60750	28438.96740	-0.37220	9.03570	7.37760	K562	EIF4G2
LDHB	ENSG00000111716.8	5265.84800	7828.89350	-0.57210	3.44370	2.01160	K562	EXOSC5
LDHB	ENSG00000111716.8	7461.41770	10097.70450	-0.43650	3.85130	2.49300	K562	FKBP4
LDHB	ENSG00000111716.8	3700.18300	6759.11220	-0.86920	9.52780	7.89170	K562	FMR1
LDHB	ENSG00000111716.8	3289.02710	5728.74330	-0.80060	9.21850	7.45130	K562	FTO
LDHB	ENSG00000111716.8	8829.00470	12340.22120	-0.48300	3.96600	2.22220	K562	GEMIN5
LDHB	ENSG00000111716.8	9182.21520	13107.22910	-0.51340	6.98560	5.22440	K562	GLRX3
LDHB	ENSG00000111716.8	3657.35290	6343.11230	-0.79440	7.40210	6.10060	K562	GPKOW
LDHB	ENSG00000111716.8	17662.98540	23108.28800	-0.38770	5.54380	4.46980	K562	GRSF1
LDHB	ENSG00000111716.8	13673.34190	16639.26250	-0.28320	3.33780	2.15740	K562	HNRNPA1
LDHB	ENSG00000111716.8	4961.05010	11638.99540	-1.23020	14.71740	13.42470	K562	HNRNPC
LDHB	ENSG00000111716.8	7158.67160	10391.62740	-0.53770	3.17100	1.94630	K562	HNRNPF
LDHB	ENSG00000111716.8	12717.85070	10378.61930	0.29310	2.15990	1.34220	K562	HNRNPM
LDHB	ENSG00000111716.8	13743.40440	18426.44210	-0.42300	8.82710	7.24120	K562	HNRNPU
LDHB	ENSG00000111716.8	20449.59130	16399.32880	0.31830	4.07430	3.04650	K562	KIF1C
LDHB	ENSG00000111716.8	3347.57420	5415.69320	-0.69400	7.18240	5.59680	K562	KRR1
LDHB	ENSG00000111716.8	8570.63950	11800.31700	-0.46140	3.68320	1.93800	K562	LIN28B
LDHB	ENSG00000111716.8	13588.21670	16817.14050	-0.30760	3.39070	2.45460	K562	MAGOH
LDHB	ENSG00000111716.8	3834.65410	6191.49950	-0.69120	7.77420	6.27050	K562	METAP2
LDHB	ENSG00000111716.8	9731.55280	13780.64230	-0.50190	12.36850	10.80120	K562	MTPAP
LDHB	ENSG00000111716.8	17855.71750	12877.05840	0.47150	2.78860	1.90070	K562	NAA15
LDHB	ENSG00000111716.8	9467.39100	11445.69670	-0.27380	3.38290	2.01460	K562	NCBP2
LDHB	ENSG00000111716.8	10823.85680	15310.96850	-0.50040	33.69590	31.58020	K562	NSUN2
LDHB	ENSG00000111716.8	6304.43710	9958.35690	-0.65950	4.07080	3.06040	K562	PCBP3
LDHB	ENSG00000111716.8	24065.95730	29222.13450	-0.28010	3.15830	1.62560	K562	PNPT1
LDHB	ENSG00000111716.8	5216.16060	7638.76300	-0.55040	3.67130	2.74200	K562	POLR2G
LDHB	ENSG00000111716.8	6476.24470	10435.01940	-0.68820	5.43020	4.10560	K562	PSIP1
LDHB	ENSG00000111716.8	23810.24720	31028.54880	-0.38200	5.10830	4.00190	K562	PUF60
LDHB	ENSG00000111716.8	23292.53430	32336.97260	-0.47330	13.77810	11.64700	K562	PUM2
LDHB	ENSG00000111716.8	20806.96010	15324.71860	0.44110	5.52960	4.79350	K562	PUS1
LDHB	ENSG00000111716.8	18841.89950	14932.03060	0.33540	6.10470	5.24930	K562	RBM15
LDHB	ENSG00000111716.8	11404.64210	15667.45990	-0.45820	6.04660	4.74270	K562	RBM22
LDHB	ENSG00000111716.8	6542.01110	9517.90860	-0.54090	5.06230	3.71820	K562	RCC2
LDHB	ENSG00000111716.8	13592.96050	16487.38740	-0.27850	2.27370	1.30690	K562	NELFE
LDHB	ENSG00000111716.8	7308.94040	12202.35320	-0.73940	6.74960	5.46180	K562	RPS19
LDHB	ENSG00000111716.8	5098.90590	7190.62390	-0.49590	3.36810	2.25500	K562	RPS3
LDHB	ENSG00000111716.8	4756.94830	6805.18080	-0.51660	6.12030	4.50330	K562	SAFB
LDHB	ENSG00000111716.8	11905.61480	15108.85550	-0.34380	6.77820	5.54960	K562	SF3A3
LDHB	ENSG00000111716.8	3494.01190	6031.78350	-0.78770	9.66550	7.76470	K562	SF3B1
LDHB	ENSG00000111716.8	4694.69030	6901.01750	-0.55580	4.37680	2.75170	K562	SLBP
LDHB	ENSG00000111716.8	5305.06510	9023.00200	-0.76620	3.90670	2.62250	K562	SRFBP1
LDHB	ENSG00000111716.8	8583.46670	11958.68410	-0.47840	4.77550	2.57130	K562	SRP68
LDHB	ENSG00000111716.8	11284.18270	15479.42420	-0.45600	19.69950	17.54830	K562	SRPK2
LDHB	ENSG00000111716.8	12944.02050	16017.41790	-0.30740	3.91700	3.08150	K562	SRSF1
LDHB	ENSG00000111716.8	4355.89380	6942.95290	-0.67260	4.67800	3.24600	K562	SRSF4
LDHB	ENSG00000111716.8	9020.60130	10763.98230	-0.25490	3.68230	2.32340	K562	SRSF7
LDHB	ENSG00000111716.8	6699.85380	8695.18710	-0.37610	3.23850	1.59460	K562	SRSF9
LDHB	ENSG00000111716.8	11005.09030	15140.53810	-0.46020	4.94760	3.19410	K562	STAU1
LDHB	ENSG00000111716.8	22374.90220	27072.45950	-0.27490	4.03600	2.23330	K562	SUCLG1
LDHB	ENSG00000111716.8	6521.32540	11599.92900	-0.83090	8.71210	6.86140	K562	SUPV3L1
LDHB	ENSG00000111716.8	10267.97300	16210.87610	-0.65880	10.53630	9.00730	K562	TARDBP
LDHB	ENSG00000111716.8	10537.13150	13506.04270	-0.35810	3.88360	1.97040	K562	TBRG4
LDHB	ENSG00000111716.8	13016.09160	15637.16690	-0.26470	3.02670	2.16340	K562	TIA1
LDHB	ENSG00000111716.8	4518.83640	10037.07020	-1.15130	13.02270	10.88940	K562	TIAL1
LDHB	ENSG00000111716.8	7201.95850	10660.08220	-0.56580	3.40070	2.33310	K562	TRIM56
LDHB	ENSG00000111716.8	4753.54410	7239.83720	-0.60700	5.75380	3.16880	K562	TRNAU1AP
LDHB	ENSG00000111716.8	15647.64540	18095.45160	-0.20970	3.03930	1.70650	K562	TROVE2
LDHB	ENSG00000111716.8	7936.80830	12275.71390	-0.62920	6.03470	4.46220	K562	UCHL5
LDHB	ENSG00000111716.8	10175.33450	16234.58910	-0.67400	32.30060	30.16470	K562	UPF1
LDHB	ENSG00000111716.8	7715.66830	9588.54920	-0.31350	2.43180	1.31290	K562	UTP3
LDHB	ENSG00000111716.8	9839.68150	13891.35250	-0.49750	8.67660	7.08890	K562	WDR3
LDHB	ENSG00000111716.8	23748.03390	30055.64730	-0.33980	4.40560	2.76720	K562	WRN
LDHB	ENSG00000111716.8	7730.80260	12497.92740	-0.69300	7.79170	5.46990	K562	XRN2
LDHB	ENSG00000111716.8	19021.35290	28578.07010	-0.58730	10.36870	8.57560	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LDHB is not available on ENCORE database.

1 RBPs can affect the splicing of LDHB :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
A3SS	LDHB	ENSG00000111716.8	chr12	-	21807476	21807702			21807476	21807611	21810401	21810728	0.79300	0.00002	0.00022	longer	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LDHB

General Information

Functions

Localization

Domains (AlphaFold: LDHB)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LDHB is not avaliable on ENCORE database.

20 proteins are bound to LDHB RNA:

eCLIP assay for LDHB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LDHB is not available on ENCORE database.

87 RBPs can affect the gene expression of LDHB :

The Knockdown/knockout RNA-Seq assay for LDHB is not available on ENCORE database.

1 RBPs can affect the splicing of LDHB :

The Knockdown/knockout RNA-Seq assay for LDHB is not avaliable on ENCORE database.