KCTD9

General Information

Gene Name       : KCTD9
Gene ID             : ENSG00000104756.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KCTD9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KCTD9ENSG00000104756.1521.6917.5419.62ENCSR000AEF
HepG2KCTD9ENSG00000104756.1517.0524.9220.98ENCSR985KAT
K562KCTD9ENSG00000104756.1532.8932.2432.56ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KCTD9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • KCTD9 RNA is bound by 19 proteins.  







eCLIP assay for KCTD9 is not avaliable on ENCORE database.





19 proteins are bound to KCTD9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr82529817425298251-3'-UTR,CDS,intron-Distal,intron-Proximal4.730168.54916K562SF3B4
chr82528664625286703-3'-UTR,intron-Distal,intron-Proximal3.998783.04956HepG2HNRNPL
chr82528996325290049-3'-UTR,CDS,intron-Distal,intron-Proximal3.320204.98422K562PRPF8
chr82529398225294061-3'-UTR,CDS,intron-Distal,intron-Proximal3.465974.57435K562SF3B4
chr82528998625290058-3'-UTR,CDS,intron-Distal,intron-Proximal4.288997.46483HepG2PRPF8
chr82530355925303626-5'-UTR,intron-Distal,intron-Proximal3.960113.21228K562TIA1
chr82531575125315819-5'-UTR,CDS,intron-Distal,intron-Proximal4.467244.44779HepG2FASTKD2
chr82531576225315832-5'-UTR,intron-Distal,intron-Proximal4.167065.82900HepG2GTF2F1
chr82531572225315849-5'-UTR,CDS,intron-Distal,intron-Proximal3.8860116.67356K562CSTF2T
chr82531575925315848-5'-UTR,CDS,intron-Distal,intron-Proximal4.101914.32275HepG2FAM120A
chr82531573425315835-5'-UTR,CDS,intron-Distal,intron-Proximal3.7325025.28748K562DROSHA
chr82531574825315840-5'-UTR,CDS,intron-Distal,intron-Proximal3.746204.92568HepG2DROSHA
chr82531574825315867-5'-UTR,CDS,intron-Distal,intron-Proximal3.000595.07619HepG2CSTF2T
chr82531571525315846-5'-UTR,CDS,intron-Distal,intron-Proximal4.342624.61711HepG2NCBP2
chr82531572325315852-5'-UTR,CDS,intron-Distal,intron-Proximal3.787688.36924K562FTO
chr82531571525315845-5'-UTR,CDS,intron-Distal,intron-Proximal6.5331540.41471K562GTF2F1
chr82531574625315847-5'-UTR,CDS,intron-Distal,intron-Proximal3.190896.19428K562FUS
chr82531574625315878-5'-UTR,CDS,intron-Distal,intron-Proximal5.3878930.97520HepG2PRPF4
chr82531575625315801-5'-UTR,CDS,intron-Distal,intron-Proximal3.803645.07204K562FASTKD2
chr82531574625315833-5'-UTR,CDS,intron-Distal,intron-Proximal3.630177.91510K562DDX6
chr82531554125315617-intron-Distal3.113735.63886HepG2FAM120A
chr82530656825306657-intron-Distal3.7580811.50829K562RBFOX2
chr82529947725299523-intron-Distal4.384074.51299HepG2SUGP2
chr82531563225315688-intron-Distal3.785186.00449HepG2FAM120A
chr82530564125305723-intron-Distal5.529599.44534K562PTBP1
chr82530052525300632-intron-Distal3.874794.30679K562KHSRP
chr82531551825315583-intron-Distal6.7283915.75774HepG2EFTUD2
chr82529853525298622-intron-Distal3.138503.10640HepG2SUGP2
chr82530564225305706-intron-Distal5.7050910.89838HepG2PTBP1
chr82530560125305641-intron-Distal5.004289.08502K562PTBP1
chr82530559625305642-intron-Distal4.9760411.56570HepG2PTBP1
chr82531503325315082-intron-Distal3.983967.39596K562CSTF2T
chr82531562425315678-intron-Distal4.589254.75311K562CSTF2T
chr82529825225298370-intron-Distal,intron-Proximal3.104185.25676K562KHSRP
chr82531557525315594-intron-Distal3.971093.31153K562GTF2F1
chr82531553525315638-intron-Distal5.5000015.81126K562DROSHA
chr82531556325315625-intron-Distal4.527315.93727HepG2CSTF2T
chr82531555125315624-intron-Distal4.5250911.36705K562CSTF2T
chr82531563025315681-intron-Distal4.7606610.03412HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KCTD9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KCTD9 is not available on ENCORE database.

  • 85 RBPs can affect the levels of KCTD9.  








The Knockdown/knockout RNA-Seq assay for KCTD9 is not available on ENCORE database.





85 RBPs can affect the gene expression of KCTD9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KCTD9ENSG00000104756.11662.39350942.27520-0.508503.597502.52790HepG2ABCF1
KCTD9ENSG00000104756.111146.11670689.358000.733306.505905.72860HepG2AKAP1
KCTD9ENSG00000104756.11510.385001103.40380-1.1123018.3307016.99140HepG2BOP1
KCTD9ENSG00000104756.11930.813001277.45070-0.456702.808501.82470HepG2CCAR1
KCTD9ENSG00000104756.11528.71760790.79220-0.580808.522407.47930HepG2CKAP4
KCTD9ENSG00000104756.11371.36870833.48230-1.1663010.047508.62360HepG2CNOT7
KCTD9ENSG00000104756.11830.006301047.19840-0.335304.340003.44560HepG2DAZAP1
KCTD9ENSG00000104756.11478.54270731.48420-0.612209.183807.83170HepG2DDX19B
KCTD9ENSG00000104756.11344.09900611.54640-0.829609.218807.58370HepG2DDX24
KCTD9ENSG00000104756.111052.48270660.362600.672406.238405.33550HepG2DDX3X
KCTD9ENSG00000104756.11746.60750567.242000.396302.064201.52390HepG2DDX6
KCTD9ENSG00000104756.11503.28250756.67180-0.588307.194506.19980HepG2DKC1
KCTD9ENSG00000104756.11457.17730755.57140-0.724809.971608.70090HepG2DNAJC21
KCTD9ENSG00000104756.11475.42590748.88960-0.6555010.364509.19980HepG2DNAJC2
KCTD9ENSG00000104756.11634.66450361.217000.813008.635307.28870HepG2FUBP3
KCTD9ENSG00000104756.11971.43810608.026100.675906.323105.30300HepG2FXR1
KCTD9ENSG00000104756.11618.701701148.33290-0.8922010.064008.89740HepG2GPKOW
KCTD9ENSG00000104756.11637.43450848.48170-0.412602.993402.27580HepG2HNRNPC
KCTD9ENSG00000104756.11587.48330766.90200-0.384503.328002.54730HepG2HNRNPF
KCTD9ENSG00000104756.11714.27830953.95410-0.417405.787504.84350HepG2HNRNPL
KCTD9ENSG00000104756.11442.490001095.87300-1.3084021.3776019.88660HepG2HNRNPLL
KCTD9ENSG00000104756.11603.25710842.87230-0.482506.011905.14750HepG2HNRNPU
KCTD9ENSG00000104756.11571.59780755.18770-0.401802.970102.22210HepG2IGF2BP1
KCTD9ENSG00000104756.11692.45600860.96670-0.314203.626402.79700HepG2ILF2
KCTD9ENSG00000104756.11585.34200794.23340-0.440302.487801.37440HepG2KHDRBS1
KCTD9ENSG00000104756.11831.51110576.682200.527903.164902.08280HepG2KHSRP
KCTD9ENSG00000104756.111038.373701348.67140-0.377202.177701.44870HepG2LARP4
KCTD9ENSG00000104756.11844.14600608.238200.472803.169502.46770HepG2MAGOH
KCTD9ENSG00000104756.11837.65020611.647900.453502.733102.10540HepG2MATR3
KCTD9ENSG00000104756.111034.33680626.060100.724206.965205.98190HepG2NCBP2
KCTD9ENSG00000104756.11820.553001038.39330-0.339703.238602.41590HepG2NOL12
KCTD9ENSG00000104756.111116.27000761.816200.551102.396601.58210HepG2PABPC1
KCTD9ENSG00000104756.11333.06470557.56770-0.743305.871304.83270HepG2PABPC4
KCTD9ENSG00000104756.11692.77700834.30340-0.268202.155501.40060HepG2PARN
KCTD9ENSG00000104756.11602.48030751.77530-0.319402.531301.82270HepG2PPIL4
KCTD9ENSG00000104756.11827.96330557.792400.569707.573706.75820HepG2PTBP1
KCTD9ENSG00000104756.11815.15050991.20380-0.282101.989401.47250HepG2PUF60
KCTD9ENSG00000104756.11875.056901052.16730-0.265903.054102.43810HepG2PUM1
KCTD9ENSG00000104756.11885.647901051.42320-0.247501.874401.31660HepG2PUM2
KCTD9ENSG00000104756.11937.28230604.052400.633708.070807.08960HepG2QKI
KCTD9ENSG00000104756.111986.02980703.375001.4974016.5696014.98690HepG2RAVER1
KCTD9ENSG00000104756.11497.99180981.52530-0.9789018.7278017.62440HepG2RBM22
KCTD9ENSG00000104756.11875.33420548.235500.674907.889206.80190HepG2RBM25
KCTD9ENSG00000104756.11745.96350620.749700.265001.925601.45560HepG2NELFE
KCTD9ENSG00000104756.11312.24040524.33400-0.747803.511502.82780HepG2RPS19
KCTD9ENSG00000104756.11476.70340836.98320-0.812106.524005.30110HepG2RPS3A
KCTD9ENSG00000104756.11807.19760518.258700.639105.145904.10620HepG2RRP9
KCTD9ENSG00000104756.11629.60660750.61700-0.253601.991201.42970HepG2SAFB2
KCTD9ENSG00000104756.11702.24480580.691300.274101.976101.46250HepG2SF3B4
KCTD9ENSG00000104756.11684.54900875.34950-0.354704.204403.44130HepG2SMN1
KCTD9ENSG00000104756.111339.746001108.586100.273102.826802.32150HepG2SRFBP1
KCTD9ENSG00000104756.111260.44430606.133401.0561027.5881026.43630HepG2SRSF1
KCTD9ENSG00000104756.11587.38200753.42770-0.359202.955902.24000HepG2SRSF7
KCTD9ENSG00000104756.11736.76550493.136800.579107.747506.90870HepG2SRSF9
KCTD9ENSG00000104756.11944.26760657.302400.522502.841101.62140HepG2SUB1
KCTD9ENSG00000104756.11661.37030544.864600.279501.952501.46750HepG2TAF15
KCTD9ENSG00000104756.11615.788301068.06990-0.794509.704308.46680HepG2TARDBP
KCTD9ENSG00000104756.11774.24310500.605200.629003.627802.67670HepG2TIA1
KCTD9ENSG00000104756.11559.86770819.02020-0.548805.896605.21820HepG2TIAL1
KCTD9ENSG00000104756.11576.05750826.32850-0.520506.776905.96210HepG2TRIM56
KCTD9ENSG00000104756.111209.70240814.052000.571405.692704.80820HepG2U2AF1
KCTD9ENSG00000104756.11654.85630821.47250-0.327002.834001.77540HepG2UTP18
KCTD9ENSG00000104756.11500.05920665.39030-0.412102.021501.39340HepG2XRN2
KCTD9ENSG00000104756.11703.82450878.98110-0.320603.459402.86700HepG2ZNF622
KCTD9ENSG00000104756.112476.287501787.079100.470509.465508.49600K562AGGF1
KCTD9ENSG00000104756.112316.477401859.516100.316902.696402.05150K562AKAP8L
KCTD9ENSG00000104756.111875.000202686.30860-0.518702.871501.78420K562CNOT7
KCTD9ENSG00000104756.11967.598901281.10770-0.404903.737201.62420K562DDX24
KCTD9ENSG00000104756.111224.262801562.17860-0.351604.174003.31760K562EIF2S2
KCTD9ENSG00000104756.111485.443001161.060700.355303.617102.05260K562FUS
KCTD9ENSG00000104756.112391.641301445.349700.726504.535503.58230K562G3BP2
KCTD9ENSG00000104756.111441.519701853.06710-0.362303.008302.18190K562GPKOW
KCTD9ENSG00000104756.111732.930402081.87960-0.264702.032301.37870K562GRSF1
KCTD9ENSG00000104756.111262.023401601.69230-0.343903.849802.79330K562HNRNPU
KCTD9ENSG00000104756.111986.054902543.02230-0.356603.256002.39440K562HSPD1
KCTD9ENSG00000104756.112783.225301973.483900.495902.410101.64820K562KIF1C
KCTD9ENSG00000104756.112354.660901549.597500.603504.017502.89710K562NAA15
KCTD9ENSG00000104756.111618.364001875.45180-0.212702.876702.11780K562NSUN2
KCTD9ENSG00000104756.111552.417402129.11770-0.455704.703703.59290K562PPIG
KCTD9ENSG00000104756.112821.223403327.82450-0.238302.542501.62070K562PUM2
KCTD9ENSG00000104756.114337.204101844.278001.2336030.8853029.04710K562PUS1
KCTD9ENSG00000104756.112102.895801378.861800.608803.636601.97200K562RAVER1
KCTD9ENSG00000104756.112748.212601796.848200.6129012.5160011.25880K562RBM15
KCTD9ENSG00000104756.111167.966101585.22130-0.440702.809101.79910K562RPS3
KCTD9ENSG00000104756.111464.397501032.806900.503603.355901.88670K562RRP9
KCTD9ENSG00000104756.111300.95430864.375600.589703.821901.96350K562SERBP1
KCTD9ENSG00000104756.112199.888001895.957200.214402.636501.71920K562SRPK2
KCTD9ENSG00000104756.111112.192901530.62450-0.460702.413901.44060K562SRSF4
KCTD9ENSG00000104756.111305.45370978.023700.416502.989401.93140K562SUPV3L1
KCTD9ENSG00000104756.11821.733201615.27190-0.9750015.9993014.02430K562TARDBP
KCTD9ENSG00000104756.112147.645101796.790100.257203.150501.79010K562TROVE2
KCTD9ENSG00000104756.112102.849201400.112300.586702.678201.60580K562U2AF1
KCTD9ENSG00000104756.112132.813801446.306100.560308.867507.42070K562U2AF2
KCTD9ENSG00000104756.111584.291701988.58060-0.327905.026704.08900K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KCTD9 is not available on ENCORE database.





25 RBPs can affect the splicing of KCTD9 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEKCTD9ENSG00000104756.11chr8-2530789525307997253036442530376625315714253157960.138000.003040.05099includedK562SRSF1
SEKCTD9ENSG00000104756.11chr8-2530364425303766252980922529818925315714253159580.388000.000020.00779includedK562FTO
SEKCTD9ENSG00000104756.11chr8-253018072530185125298058252981892530364425303766-0.103000.001600.03072excludedK562SF3B4
SEKCTD9ENSG00000104756.11chr8-252967942529692325293933252940012529712125297180-0.088000.000720.01612excludedK562SF3B4
SEKCTD9ENSG00000104756.11chr8-2530789525307997253036442530376625315714253157960.184000.000990.07652includedK562XRCC6
SEKCTD9ENSG00000104756.11chr8-253078952530799725303644253037662531571425315796-0.249000.000050.00100excludedHepG2U2AF2
SEKCTD9ENSG00000104756.11chr8-2530364425303798252980922529818925315714253157960.438000.000020.00044includedK562AQR
SEKCTD9ENSG00000104756.11chr8-253018072530185125298139252981892530364425303766-0.176000.000000.00000excludedK562AQR
SEKCTD9ENSG00000104756.11chr8-253036442530376625298092252981892531571425315958-0.207000.000250.00529excludedK562PUS1
SEKCTD9ENSG00000104756.11chr8-2530789525307997253036442530376625315714253157960.174000.001140.06189includedHepG2NCBP2
SEKCTD9ENSG00000104756.11chr8-2530364425303766252980922529818925315714253159580.280000.000020.00587includedK562NSUN2
SEKCTD9ENSG00000104756.11chr8-2530789525307997253036442530376625315714253157960.155000.000120.01918includedHepG2LARP4
SEKCTD9ENSG00000104756.11chr8-253018072530185125298058252981892530364425303766-0.102000.000020.00278excludedK562HNRNPL
SEKCTD9ENSG00000104756.11chr8-253078952530799725303644253037662531571425315796-0.156000.000040.04153excludedK562DDX21
SEKCTD9ENSG00000104756.11chr8-253018072530185125298058252981892530364425303766-0.155000.000020.00113excludedHepG2SF3A3
SEKCTD9ENSG00000104756.11chr8-2530789525307997253036442530376625315714253157960.253000.000050.00648includedHepG2IGF2BP3
SEKCTD9ENSG00000104756.11chr8-253078952530799725303644253037662531571425315796-0.193000.000000.00006excludedK562SRSF7
SEKCTD9ENSG00000104756.11chr8-2530789525307997253036442530376625315714253157960.129000.003610.09789includedK562TARDBP
SEKCTD9ENSG00000104756.11chr8-253078952530799725303644253037662531571425315796-0.070000.000620.02618excludedK562HNRNPU
SEKCTD9ENSG00000104756.11chr8-253078952530799725303644253037662531571425315796-0.127000.000080.00355excludedK562AGGF1
SEKCTD9ENSG00000104756.11chr8-2530364425303766252980922529818925315714253159580.428000.000000.00032includedK562CPSF6
SEKCTD9ENSG00000104756.11chr8-2530364425303766252980922529818925315714253159830.285000.001000.03996includedK562SF3B1
SEKCTD9ENSG00000104756.11chr8-253036442530376625298092252981892531571425315958-0.247000.001480.06009excludedK562HNRNPK
SEKCTD9ENSG00000104756.11chr8-2530789525307997253036442530376625315714253157960.268000.000240.02067includedHepG2SRSF9
A3SSKCTD9ENSG00000104756.11chr8-252971212529730825297121252971802529809225298189-0.214000.000060.06859shorterHepG2NOL12
A3SSKCTD9ENSG00000104756.11chr8-252971212529730825297121252971802529809225298189-0.185000.000010.00214shorterK562FXR1
A3SSKCTD9ENSG00000104756.11chr8-2530180725301888253018072530185125303644253037980.175000.000000.00000longerK562AQR
A3SSKCTD9ENSG00000104756.11chr8-2529084525290973252908452529095125292878252930280.173000.000000.00000longerK562AQR
A3SSKCTD9ENSG00000104756.11chr8-2529712125297308252971212529718025298092252981890.173000.000000.00001longerK562AQR
A3SSKCTD9ENSG00000104756.11chr8-2529001925290184252900192529015325290845252909730.193000.000000.00000longerK562AQR
A3SSKCTD9ENSG00000104756.11chr8-2529393325294128252939332529400125296794252969230.178000.000000.00000longerK562AQR
A3SSKCTD9ENSG00000104756.11chr8-252980922529823625298092252981892530364425303798-0.671000.003550.02139shorterK562AQR
A3SSKCTD9ENSG00000104756.11chr8-252971212529730825297121252972182529809225298189-0.298000.001790.01166shorterK562AQR
A3SSKCTD9ENSG00000104756.11chr8-2529712125297308252971212529718025298092252981890.126000.000130.00909longerK562PUS1
A3SSKCTD9ENSG00000104756.11chr8-252971212529730825297121252971802529809225298189-0.114000.000420.04037shorterK562SRSF1
MXEKCTD9ENSG00000104756.11chr8-25296794252969232529712125297308252939332529400125298092252981890.064000.000790.015551includedK562DROSHA
MXEKCTD9ENSG00000104756.11chr8-25290019252901532529084525290973252853652528748925292878252930280.104000.000000.000001includedK562AQR
MXEKCTD9ENSG00000104756.11chr8-25296794252969232529712125297218252939332529400125298092252981890.153000.000000.000001includedK562AQR
MXEKCTD9ENSG00000104756.11chr8-25296794252969232529712125297308252939332529400125298092252981890.168000.000000.000041includedK562AQR
MXEKCTD9ENSG00000104756.11chr8-25296794252969232529712125297369252939332529400125298092252981890.058000.003630.027491includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KCTD9 is not avaliable on ENCORE database.