COX6C

General Information

Gene Name       : COX6C
Gene ID             : ENSG00000164919.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: COX6C)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COX6CENSG00000164919.10330.08269.12299.60ENCSR000AEF
HepG2COX6CENSG00000164919.10229.15295.26262.20ENCSR985KAT
K562COX6CENSG00000164919.10309.57241.48275.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COX6C is not avaliable on ENCORE database.



Proteins bound to RNA
  • COX6C RNA is bound by 18 proteins.  







eCLIP assay for COX6C is not avaliable on ENCORE database.





18 proteins are bound to COX6C RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr8100899734100899756-3'-UTR,5'-UTR,CDS,intron-Distal3.6597010.80024HepG2LARP4
chr8100890405100890490-3'-UTR,intron-Distal4.316606.70639K562LARP4
chr8100898095100898244-3'-UTR,intron-Distal,intron-Proximal3.992463.92684K562KHSRP
chr8100899717100899731-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.405544.27595K562NOLC1
chr8100890402100890449-3'-UTR,intron-Distal4.8745446.08885HepG2LARP4
chr8100890407100890461-3'-UTR,intron-Distal5.8161215.52411K562NOLC1
chr8100899717100899786-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.1264613.08773K562PUM2
chr8100899717100899770-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.8552811.46767HepG2SUB1
chr8100899717100899734-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.9402111.12268HepG2LARP4
chr8100890388100890492-3'-UTR,intron-Distal3.985259.93776K562PABPC4
chr8100890396100890496-3'-UTR,intron-Distal,intron-Proximal7.2702997.16721HepG2SUB1
chr8100890449100890494-3'-UTR,intron-Distal,intron-Proximal4.9478052.80170HepG2LARP4
chr8100890461100890494-3'-UTR,intron-Distal,intron-Proximal4.5591911.18356K562NOLC1
chr8100905866100905934-5'-UTR,intron-Distal,intron-Proximal3.763116.01636K562EIF3G
chr8100904181100904260-5'-UTR,CDS,intron-Distal3.0865518.39033K562GEMIN5
chr8100904185100904270-5'-UTR,CDS,intron-Distal3.5521587.94116K562DDX3X
chr8100905864100905931-5'-UTR,intron-Distal,intron-Proximal4.9037620.27184K562RPS3
chr8100904270100904280-5'-UTR,intron-Distal,intron-Proximal4.87726400.00000K562DDX3X
chr8100904244100904280-5'-UTR,CDS,intron-Distal,intron-Proximal4.2021511.23654K562RPS3
chr8100905865100905913-5'-UTR,intron-Distal,intron-Proximal3.704779.19208K562GEMIN5
chr8100904236100904278-5'-UTR,CDS,intron-Distal,intron-Proximal3.537159.04215HepG2SUB1
chr8100905833100905892-5'-UTR,intron-Distal,intron-Proximal4.951738.11807HepG2PRPF8
chr8100905865100905927-5'-UTR,intron-Distal,intron-Proximal5.14845400.00000K562DDX3X
chr8100905865100905899-5'-UTR,intron-Distal,intron-Proximal4.047327.58352K562DROSHA
chr8100904239100904281-5'-UTR,CDS,intron-Distal,intron-Proximal3.546677.05394K562DROSHA
chr8100904260100904281-5'-UTR,intron-Distal,intron-Proximal3.157757.18154K562GEMIN5
chr8100899809100899846-CDS,intron-Distal3.235544.85789HepG2SUB1
chr8100904187100904244-CDS,intron-Distal4.4490712.26362HepG2RPS3
chr8100899755100899793-CDS,intron-Distal4.072275.79184K562RPS3
chr8100904136100904187-CDS,intron-Distal4.3518312.28002HepG2RPS3
chr8100904137100904187-CDS,intron-Distal3.7959710.78852HepG2LARP4
chr8100904133100904181-CDS,intron-Distal,intron-Proximal4.9219561.95047K562RPS3
chr8100904137100904184-CDS,intron-Distal3.822846.88189HepG2DDX3X
chr8100904186100904239-CDS,intron-Distal3.548486.44106K562DROSHA
chr8100904181100904236-CDS,intron-Distal3.914885.53515K562EIF3G
chr8100904138100904183-CDS,intron-Distal4.530149.30693K562LARP4
chr8100899756100899795-CDS,intron-Distal4.0059013.62288HepG2LARP4
chr8100904181100904244-CDS,intron-Distal5.3910451.97803K562RPS3
chr8100899828100899845-CDS,intron-Distal3.614685.81815HepG2LARP4
chr8100904184100904235-CDS,intron-Distal6.4175111.20892HepG2DDX3X
chr8100899795100899828-CDS,intron-Distal3.568138.60819HepG2LARP4
chr8100896363100896406-intron-Distal3.457253.14999K562EXOSC5
chr8100895271100895341-intron-Distal4.088734.28663HepG2SUGP2
chr8100895469100895663-intron-Distal4.3987813.20432K562AGGF1
chr8100892375100892489-intron-Distal3.614045.30446HepG2SUGP2
chr8100895577100895677-intron-Distal3.783606.65670K562HNRNPL
chr8100896211100896284-intron-Distal4.091987.01333K562EXOSC5
chr8100903667100903707-intron-Distal5.296766.95895K562PTBP1
chr8100903709100903775-intron-Distal3.667124.19039HepG2PTBP1
chr8100903719100903773-intron-Distal4.524606.59655K562PTBP1
chr8100896089100896152-intron-Distal5.067538.04096K562EXOSC5
chr8100895931100895979-intron-Distal4.444253.89080K562EXOSC5
chr8100897960100898000-intron-Distal4.348554.80399K562EXOSC5
chr8100894412100894548-intron-Distal4.482413.62366HepG2HNRNPM
chr8100896446100896552-intron-Distal5.288738.36716K562EXOSC5
chr8100895623100895683-intron-Distal3.875804.26114HepG2HNRNPL
chr8100897825100897876-intron-Distal4.825735.76606K562EXOSC5
chr8100895852100895926-intron-Distal4.138547.01333K562EXOSC5
chr8100903662100903709-intron-Distal3.955383.30286HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for COX6C is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COX6C is not available on ENCORE database.

  • 106 RBPs can affect the levels of COX6C.  








The Knockdown/knockout RNA-Seq assay for COX6C is not available on ENCORE database.





106 RBPs can affect the gene expression of COX6C :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
COX6CENSG00000164919.6572.70530970.05910-0.760306.988305.63660HepG2BCLAF1
COX6CENSG00000164919.6935.76490719.906100.378203.650602.48060HepG2YBX3
COX6CENSG00000164919.61496.448701740.15380-0.217702.018201.45290HepG2CELF1
COX6CENSG00000164919.61152.36680937.571900.297502.182801.38210HepG2DDX24
COX6CENSG00000164919.61150.963101871.05870-0.701008.219507.23540HepG2EIF2S1
COX6CENSG00000164919.61376.029102013.13690-0.548903.813403.01050HepG2EIF4B
COX6CENSG00000164919.61565.461601845.94540-0.237802.508201.70320HepG2EIF4G1
COX6CENSG00000164919.6633.106502112.18390-1.7382086.2774083.83050HepG2ETF1
COX6CENSG00000164919.6689.879501074.45370-0.639207.428206.17740HepG2FUBP3
COX6CENSG00000164919.61537.621002086.05130-0.440103.776002.97780HepG2FXR1
COX6CENSG00000164919.61468.816401935.28540-0.397902.879902.20140HepG2G3BP1
COX6CENSG00000164919.61421.117402054.33540-0.531605.383604.12870HepG2G3BP2
COX6CENSG00000164919.6360.73770661.46450-0.874708.628707.09160HepG2GEMIN5
COX6CENSG00000164919.61461.017301959.26210-0.423303.904603.08820HepG2HNRNPK
COX6CENSG00000164919.61445.198601704.40040-0.238002.939502.24710HepG2HNRNPL
COX6CENSG00000164919.6651.98350504.695200.369302.043401.49410HepG2HNRNPLL
COX6CENSG00000164919.6821.435601036.13340-0.335002.626101.92000HepG2IGF2BP1
COX6CENSG00000164919.61570.696701967.23470-0.324802.233101.61890HepG2IGF2BP2
COX6CENSG00000164919.61450.441601978.59090-0.448002.842701.82610HepG2KHSRP
COX6CENSG00000164919.61249.770702086.77820-0.739609.101107.92430HepG2MAGOH
COX6CENSG00000164919.61249.791602098.50920-0.747708.314707.27200HepG2MATR3
COX6CENSG00000164919.61395.204502147.98290-0.622506.522405.56800HepG2NCBP2
COX6CENSG00000164919.61544.074001855.35480-0.265002.517601.79220HepG2NOL12
COX6CENSG00000164919.61120.923001913.11160-0.771209.451408.13540HepG2PABPC4
COX6CENSG00000164919.61113.882601702.98370-0.6125013.1623011.99400HepG2PCBP1
COX6CENSG00000164919.6426.61890614.39040-0.526204.701703.11270HepG2PKM
COX6CENSG00000164919.61049.457601732.84090-0.7235016.9134015.78130HepG2PTBP1
COX6CENSG00000164919.61465.015201880.11020-0.359906.551505.72050HepG2PUM1
COX6CENSG00000164919.61459.617701878.73330-0.364204.056103.24970HepG2PUM2
COX6CENSG00000164919.6760.326401005.81080-0.403705.141704.34900HepG2PUS1
COX6CENSG00000164919.61337.075101876.72790-0.489107.242006.30220HepG2QKI
COX6CENSG00000164919.62326.965801765.382500.398406.100705.40520HepG2RBM22
COX6CENSG00000164919.61301.340701703.24430-0.388303.999203.20060HepG2RBM25
COX6CENSG00000164919.61248.234301928.49270-0.6276013.7465012.71170HepG2NELFE
COX6CENSG00000164919.61115.253001796.11580-0.6875016.1656014.87790HepG2RECQL
COX6CENSG00000164919.6406.23720722.95200-0.8316010.201909.11000HepG2RPS19
COX6CENSG00000164919.6948.62980702.263800.433702.590901.96400HepG2SAFB2
COX6CENSG00000164919.6650.867101228.60570-0.916602.697201.36870HepG2SF1
COX6CENSG00000164919.61028.041101804.12660-0.8114021.5970020.20460HepG2SF3B4
COX6CENSG00000164919.6585.830501098.13020-0.906502.956401.59170HepG2SNRNP200
COX6CENSG00000164919.61285.649201748.71340-0.443807.385606.42990HepG2SRSF5
COX6CENSG00000164919.6844.357801033.74810-0.292002.611401.93380HepG2SRSF7
COX6CENSG00000164919.61230.063701532.00580-0.316704.167303.51550HepG2SRSF9
COX6CENSG00000164919.61406.926701988.76310-0.4993011.067009.96350HepG2SUCLG1
COX6CENSG00000164919.61258.207901692.59620-0.427903.205602.60820HepG2TAF15
COX6CENSG00000164919.6340.07660491.96260-0.532703.431502.63390HepG2TARDBP
COX6CENSG00000164919.6636.93400919.81970-0.530202.903601.40430HepG2TRA2A
COX6CENSG00000164919.61356.013001730.30230-0.351703.376602.40210HepG2TUFM
COX6CENSG00000164919.6576.216401277.22100-1.148303.897702.71470HepG2U2AF2
COX6CENSG00000164919.61194.974201831.50390-0.616005.806804.56350HepG2UBE2L3
COX6CENSG00000164919.6941.37300645.492100.544304.893803.87790HepG2UCHL5
COX6CENSG00000164919.61346.173901075.568100.323702.391401.71280HepG2XRN2
COX6CENSG00000164919.61044.18280847.558200.300903.484702.89100HepG2ZNF622
COX6CENSG00000164919.63919.577302556.818200.6162014.3832013.19320K562AGGF1
COX6CENSG00000164919.63560.101102809.774900.341403.714402.53690K562AKAP8
COX6CENSG00000164919.64276.355302660.538900.684606.587405.54710K562AKAP8L
COX6CENSG00000164919.63364.474102791.647200.269202.692401.79230K562ATP5C1
COX6CENSG00000164919.62588.719703196.03910-0.304002.582501.32740K562BCCIP
COX6CENSG00000164919.62260.868603088.09080-0.449805.800104.39580K562BCLAF1
COX6CENSG00000164919.6882.187701261.76670-0.516304.660103.51650K562BOP1
COX6CENSG00000164919.6665.414901008.21820-0.599505.928304.23300K562CCAR1
COX6CENSG00000164919.61681.202802342.77580-0.478706.210504.54120K562CSTF2
COX6CENSG00000164919.62320.596703124.27210-0.429006.365705.43510K562DDX47
COX6CENSG00000164919.6828.865201128.65660-0.445403.566502.02750K562DHX30
COX6CENSG00000164919.62439.313202963.43320-0.280803.659002.85200K562EIF2S2
COX6CENSG00000164919.6334.061401025.54950-1.618208.786406.96090K562EIF3A
COX6CENSG00000164919.62048.130802831.40210-0.467207.869106.53350K562EIF3G
COX6CENSG00000164919.61589.920202399.95950-0.594108.366306.93810K562EIF4A3
COX6CENSG00000164919.61720.357702161.23700-0.329104.013302.57890K562EIF4B
COX6CENSG00000164919.61013.958601390.68450-0.455802.640101.40620K562EXOSC5
COX6CENSG00000164919.62453.635403029.12530-0.304003.223901.49380K562FASTKD2
COX6CENSG00000164919.62805.247001988.054200.496703.066902.17200K562FIP1L1
COX6CENSG00000164919.6854.239201156.92700-0.437603.302702.29690K562FTO
COX6CENSG00000164919.61862.841302495.84670-0.422002.330001.76640K562FXR1
COX6CENSG00000164919.61737.145102627.95330-0.597204.935003.92750K562G3BP2
COX6CENSG00000164919.61664.979002242.51060-0.429603.314702.06450K562GLRX3
COX6CENSG00000164919.6923.915201281.01440-0.471503.801802.87700K562GPKOW
COX6CENSG00000164919.64840.143103949.080100.293403.084702.28950K562GRSF1
COX6CENSG00000164919.61140.522902193.15280-0.9433014.0920012.82790K562HNRNPC
COX6CENSG00000164919.61440.882701958.45220-0.442804.901303.32420K562HNRNPF
COX6CENSG00000164919.64008.458402823.308600.505607.983706.39590K562KIF1C
COX6CENSG00000164919.6687.380901093.71000-0.670005.116203.79590K562KRR1
COX6CENSG00000164919.61579.863502224.27960-0.493504.799202.75410K562LIN28B
COX6CENSG00000164919.61498.357401955.51770-0.384204.036102.10180K562LSM11
COX6CENSG00000164919.63129.476203731.12850-0.253702.245401.48410K562MAGOH
COX6CENSG00000164919.63153.044103723.66940-0.240002.150201.34740K562MATR3
COX6CENSG00000164919.63827.861003162.845100.275202.557701.68960K562MBNL1
COX6CENSG00000164919.6949.518901250.39430-0.397102.461601.64000K562METAP2
COX6CENSG00000164919.61966.763602357.71470-0.261602.667401.87290K562MTPAP
COX6CENSG00000164919.63593.714002216.941900.696805.345403.97910K562NAA15
COX6CENSG00000164919.61899.857502619.59240-0.4635013.7532012.26850K562NSUN2
COX6CENSG00000164919.63049.618302256.948300.434204.646303.54460K562PPIG
COX6CENSG00000164919.61365.880701966.38120-0.525706.288204.83880K562PSIP1
COX6CENSG00000164919.62781.859403624.97090-0.381904.786003.93490K562PTBP1
COX6CENSG00000164919.64098.205602638.141000.635406.634705.83580K562PUS1
COX6CENSG00000164919.63423.092802570.788800.413004.738603.98250K562RBM15
COX6CENSG00000164919.62672.396403476.31010-0.379403.860002.85590K562RBM22
COX6CENSG00000164919.62637.611503388.43610-0.361403.105301.60420K562RBM34
COX6CENSG00000164919.61173.787201794.01970-0.612009.292107.45740K562RCC2
COX6CENSG00000164919.61356.073702228.28260-0.716507.547806.18420K562RPS19
COX6CENSG00000164919.6986.596901256.61990-0.349002.293601.39270K562RPS3
COX6CENSG00000164919.6761.477601208.89700-0.666808.442706.60180K562SAFB
COX6CENSG00000164919.62165.908202584.92920-0.255202.894002.06330K562SF3A3
COX6CENSG00000164919.6927.975001218.12830-0.392502.508201.58380K562SF3B1
COX6CENSG00000164919.6832.666101700.68780-1.030306.581104.80190K562SRFBP1
COX6CENSG00000164919.61534.254602184.09180-0.509505.431803.05870K562SRP68
COX6CENSG00000164919.62222.638302648.32120-0.252803.925802.83020K562SRPK2
COX6CENSG00000164919.62788.429703553.59870-0.349804.191203.32850K562SRSF1
COX6CENSG00000164919.61764.280002385.58740-0.435303.798302.29280K562STAU1
COX6CENSG00000164919.63528.956904775.57260-0.436404.545202.65760K562SUCLG1
COX6CENSG00000164919.61275.546302118.16200-0.731708.474806.65640K562SUPV3L1
COX6CENSG00000164919.61117.947101360.93580-0.283702.358601.60070K562SYNCRIP
COX6CENSG00000164919.61105.230701891.33570-0.775109.992608.11620K562TIAL1
COX6CENSG00000164919.61030.786602009.24570-0.9629018.5771015.71070K562TRIM56
COX6CENSG00000164919.62161.358502631.32330-0.283902.876402.05760K562U2AF2
COX6CENSG00000164919.61624.139802241.68010-0.464904.365303.05890K562UCHL5
COX6CENSG00000164919.61723.152202777.61250-0.6888018.6796016.99540K562UPF1
COX6CENSG00000164919.61793.251902376.71010-0.406403.416302.44660K562WDR3
COX6CENSG00000164919.61568.657502282.44640-0.541105.664903.71540K562XRN2
COX6CENSG00000164919.64624.895305813.77080-0.330103.369302.40360K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for COX6C is not available on ENCORE database.





10 RBPs can affect the splicing of COX6C :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXECOX6CENSG00000164919.6chr8-1008997171008998461009041351009042751008903761008904931009058661009059090.125000.000020.001471includedK562UCHL5
MXECOX6CENSG00000164919.6chr8-1008997171008998461009041351009042801008903671008904931009058661009059350.147000.000000.000001includedK562UCHL5
MXECOX6CENSG00000164919.6chr8-1008997171008998461009041351009042751008903761008904931009058661009059090.160000.000000.000011includedK562XRN2
MXECOX6CENSG00000164919.6chr8-1008997171008998461009041351009042801008903671008904931009058661009059350.135000.000000.000001includedK562XRN2
MXECOX6CENSG00000164919.6chr8-1008997171008998461009041351009042801008903671008904931009058661009059350.095000.000440.010161includedK562SRSF1
MXECOX6CENSG00000164919.6chr8-1008997171008998461009041351009042801008903671008904931009058661009059350.147000.002170.026711includedHepG2SFPQ
MXECOX6CENSG00000164919.6chr8-100899717100899846100904135100904280100890367100890493100905866100905935-0.075000.000470.062242includedK562SMNDC1
MXECOX6CENSG00000164919.6chr8-1008997171008998461009041351009042801008903671008904931009058661009059350.124000.000000.000091includedK562TRA2A
MXECOX6CENSG00000164919.6chr8-1008997171008998461009041351009042801008903671008904931009058661009059350.081000.000030.009961includedK562TBRG4
MXECOX6CENSG00000164919.6chr8-1008997171008998461009041351009042801008903671008904931009058661009059350.096000.000000.000101includedK562TAF15
MXECOX6CENSG00000164919.6chr8-1008997171008998461009041351009042801008903671008904931009058661009059350.112000.000040.006441includedK562HNRNPK
MXECOX6CENSG00000164919.6chr8-1008997171008998461009041351009042751008903761008904931009058661009059090.111000.000130.005461includedK562SUPV3L1
MXECOX6CENSG00000164919.6chr8-1008997171008998461009041351009042801008903671008904931009058661009059350.126000.000000.000001includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for COX6C is not avaliable on ENCORE database.