CDR2

General Information

Gene Name       : CDR2
Gene ID             : ENSG00000140743.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CDR2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CDR2ENSG00000140743.715.4516.5215.98ENCSR000AEF
HepG2CDR2ENSG00000140743.760.9865.7163.34ENCSR985KAT
K562CDR2ENSG00000140743.719.0218.7718.89ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CDR2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CDR2 RNA is bound by 29 proteins.  







eCLIP assay for CDR2 is not avaliable on ENCORE database.





29 proteins are bound to CDR2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr162235892322358983-3'-UTR,CDS,intron-Distal,intron-Proximal4.982365.87202K562UCHL5
chr162235898322359041-3'-UTR,CDS,intron-Distal,intron-Proximal4.437064.44454K562UCHL5
chr162236060722360685-3'-UTR,CDS,intron-Distal,intron-Proximal3.126903.24162HepG2G3BP1
chr162236055422360620-3'-UTR,CDS,intron-Distal,intron-Proximal3.647368.16221HepG2PRPF8
chr162235891122359046-3'-UTR,CDS,intron-Distal,intron-Proximal4.827265.41896HepG2FXR2
chr162235728422357328-3'-UTR,intron-Distal6.1734316.19343K562PUM2
chr162236061422360665-3'-UTR,CDS,intron-Distal,intron-Proximal3.689966.16886K562YBX3
chr162236063422360702-3'-UTR,CDS,intron-Distal,intron-Proximal3.039746.95311HepG2GRWD1
chr162235890422359033-3'-UTR,CDS,intron-Distal,intron-Proximal3.196934.23869K562GRWD1
chr162236070222360756-3'-UTR,CDS,intron-Distal3.070186.83963HepG2GRWD1
chr162235889822358984-3'-UTR,CDS,intron-Distal,intron-Proximal4.6342911.49169HepG2GRWD1
chr162236061122360637-3'-UTR,CDS,intron-Distal,intron-Proximal3.948827.58784HepG2BCLAF1
chr162237626822376316-3'-UTR,CDS,intron-Distal3.418105.80517HepG2GRWD1
chr162235738722357443-3'-UTR,intron-Distal3.728276.19204K562YBX3
chr162235898422359041-3'-UTR,CDS,intron-Distal,intron-Proximal4.781365.82083HepG2GRWD1
chr162236103822361119-3'-UTR,CDS,intron-Distal,intron-Proximal4.1121612.46030HepG2GRWD1
chr162235771222357761-3'-UTR,intron-Distal4.016163.20319K562UPF1
chr162236059822360611-3'-UTR,CDS,intron-Distal,intron-Proximal3.482385.15776HepG2BCLAF1
chr162236058122360673-3'-UTR,CDS,intron-Distal,intron-Proximal3.376855.67601HepG2HLTF
chr162235905922359100-3'-UTR,CDS,intron-Distal,intron-Proximal4.343636.70275K562RBM15
chr162237629722376339-3'-UTR,CDS,intron-Distal,intron-Proximal3.456243.67894HepG2AQR
chr162235766322357825-3'-UTR,intron-Distal4.727116.56044K562IGF2BP1
chr162236058422360723-3'-UTR,CDS,intron-Distal,intron-Proximal3.216548.98767HepG2PPIG
chr162235891322359057-3'-UTR,CDS,intron-Distal,intron-Proximal3.0862811.10210HepG2BCLAF1
chr162238562322385761-5'-UTR,CDS,intron-Distal,intron-Proximal3.605265.45184HepG2FTO
chr162238586122385923-5'-UTR,intron-Distal4.560498.20930HepG2DDX3X
chr162238575622385851-5'-UTR,intron-Distal,intron-Proximal4.5555011.11007HepG2DDX3X
chr162244115122441267-5'-UTR,intron-Distal3.794787.89598HepG2GRWD1
chr162244111322441163-5'-UTR,intron-Distal,intron-Proximal3.025484.85880HepG2PPIG
chr162235849422358575-CDS,intron-Distal3.748359.74534HepG2BCLAF1
chr162238555122385598-CDS,intron-Distal4.463305.14565K562UCHL5
chr162238554322385577-CDS,intron-Distal4.0048713.02279HepG2PRPF8
chr162235863522358693-CDS,intron-Distal3.624048.54238HepG2GRWD1
chr162238551322385555-CDS,intron-Distal4.751243.93614HepG2AQR
chr162238550422385590-CDS,intron-Distal4.699634.65563K562AQR
chr162235852522358644-CDS,intron-Distal3.554595.76403K562UCHL5
chr162235846722358603-CDS,intron-Distal3.7854012.94750HepG2GRWD1
chr162238550822385619-CDS,intron-Distal3.554525.74755HepG2SRSF1
chr162237617422376248-CDS,intron-Distal,intron-Proximal3.995526.34662HepG2PRPF8
chr162235832622358367-CDS,intron-Distal4.377615.18972HepG2GRWD1
chr162235841622358476-CDS,intron-Distal4.546303.80461HepG2RBM15
chr162243526722435347-intron-Distal6.158437.91709HepG2DKC1
chr162241978022419837-intron-Distal5.035793.85055HepG2XPO5
chr162238549622385543-intron-Distal4.1825615.46573HepG2PRPF8
chr162237497822375095-intron-Distal3.466613.84715HepG2HNRNPK
chr162243277522432813-intron-Distal3.352533.88253HepG2HLTF
chr162243116622431257-intron-Distal4.360859.99793HepG2SLTM
chr162237791822377991-intron-Distal3.235785.72918HepG2HNRNPK
chr162243117522431230-intron-Distal3.297883.31097K562SLTM
chr162243512522435231-intron-Distal4.706343.38582HepG2SRSF7
chr162239941622399464-intron-Distal3.865875.82498HepG2XPO5
chr162243526822435359-intron-Distal4.3224613.65130K562TARDBP
chr162243509622435229-intron-Distal6.151598.53168HepG2DKC1
chr162236509322365157-intron-Distal3.946086.74598HepG2QKI
chr162242183522421916-intron-Distal3.881986.22361HepG2HLTF
chr162242744922427542-intron-Distal3.475106.52138HepG2QKI
chr162241881122418903-intron-Distal5.9229713.28301HepG2QKI
chr162242827222428331-intron-Distal4.502325.05488HepG2QKI
chr162243516322435232-intron-Distal5.1375216.15216K562TARDBP
chr162240354222403647-intron-Distal3.805243.43228K562SAFB2
chr162236402822364095-intron-Distal4.446089.85601HepG2QKI
chr162243525222435322-intron-Distal3.128905.83065HepG2XPO5
chr162242029822420374-intron-Distal3.881027.66564HepG2RBFOX2
chr162238056822380612-intron-Distal3.214894.03067HepG2HNRNPC
chr162239937322399416-intron-Distal5.2043112.96050HepG2XPO5
chr162238542522385478-intron-Distal3.501157.03098HepG2EFTUD2
chr162243508422435163-intron-Distal5.9318218.21265K562TARDBP
chr162243140722431445-intron-Distal3.306573.34920HepG2HLTF
chr162242051822420616-intron-Distal4.762545.92514HepG2HLTF
chr162243253222432606-intron-Distal3.419645.70060HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CDR2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CDR2 is not available on ENCORE database.

  • 109 RBPs can affect the levels of CDR2.  








The Knockdown/knockout RNA-Seq assay for CDR2 is not available on ENCORE database.





109 RBPs can affect the gene expression of CDR2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CDR2ENSG00000140743.31330.227402252.74910-0.760009.232807.67190HepG2ABCF1
CDR2ENSG00000140743.31046.900101659.08510-0.664308.013006.42540HepG2ADAR
CDR2ENSG00000140743.31815.503102570.58790-0.501704.118903.48730HepG2AKAP1
CDR2ENSG00000140743.31145.837701561.87970-0.446904.378203.64520HepG2BOP1
CDR2ENSG00000140743.31995.811201623.156900.298103.012302.20910HepG2CALR
CDR2ENSG00000140743.31994.334302714.09730-0.444603.044802.01980HepG2CCAR1
CDR2ENSG00000140743.31358.182902020.73510-0.573206.082604.96650HepG2CIRBP
CDR2ENSG00000140743.31334.983401896.70040-0.5067011.8114010.63110HepG2CKAP4
CDR2ENSG00000140743.31408.605202595.50180-0.881704.677003.67830HepG2CNOT7
CDR2ENSG00000140743.3656.50240988.77590-0.590806.166804.66290HepG2CSTF2
CDR2ENSG00000140743.33827.197202534.408000.5945015.5922014.31150HepG2CELF1
CDR2ENSG00000140743.3852.233901754.46590-1.0417039.8497037.65330HepG2DDX19B
CDR2ENSG00000140743.3955.365201329.69620-0.477005.249403.98460HepG2DDX24
CDR2ENSG00000140743.31464.769102462.39550-0.749409.563908.46230HepG2DDX3X
CDR2ENSG00000140743.31252.833901574.20640-0.329402.230601.52970HepG2DDX55
CDR2ENSG00000140743.33607.638302115.327000.770109.374408.30980HepG2DDX6
CDR2ENSG00000140743.3979.089401814.88540-0.8904025.4337023.89270HepG2DKC1
CDR2ENSG00000140743.3971.152901821.07060-0.9070013.6258011.82100HepG2EEF2
CDR2ENSG00000140743.3944.234501283.39360-0.442704.142402.84950HepG2EIF3G
CDR2ENSG00000140743.3916.298402247.14970-1.2942022.3058020.53290HepG2EIF4A3
CDR2ENSG00000140743.32062.030402575.36510-0.320702.377301.62060HepG2EIF4G2
CDR2ENSG00000140743.31211.182501951.52070-0.688209.369907.54800HepG2ESF1
CDR2ENSG00000140743.31371.916503056.57600-1.1557052.3479050.35860HepG2ETF1
CDR2ENSG00000140743.3953.758401321.26000-0.470205.634503.92530HepG2FAM120A
CDR2ENSG00000140743.3644.052101436.38760-1.157206.616005.05080HepG2FTO
CDR2ENSG00000140743.31487.922802103.28030-0.499304.342503.51710HepG2G3BP1
CDR2ENSG00000140743.31316.203702232.97990-0.7626010.438008.70670HepG2G3BP2
CDR2ENSG00000140743.3733.925601316.21220-0.8427011.463209.71330HepG2GEMIN5
CDR2ENSG00000140743.3757.482201518.09630-1.0030015.2478012.87330HepG2GNB2L1
CDR2ENSG00000140743.3976.901101625.28570-0.734408.076207.02290HepG2GPKOW
CDR2ENSG00000140743.31516.383102403.05970-0.664203.417802.17880HepG2GRSF1
CDR2ENSG00000140743.3809.045601686.64070-1.0599021.0046019.51040HepG2HNRNPA1
CDR2ENSG00000140743.32039.986302504.39860-0.295903.957502.87160HepG2HNRNPA2B1
CDR2ENSG00000140743.3803.659501876.06250-1.2231027.3438025.44470HepG2HNRNPC
CDR2ENSG00000140743.31960.984002482.21080-0.340006.747905.74090HepG2HNRNPL
CDR2ENSG00000140743.3960.732801551.04910-0.691008.143907.12760HepG2HNRNPLL
CDR2ENSG00000140743.31250.705501863.66010-0.5754012.7153011.49410HepG2HNRNPU
CDR2ENSG00000140743.32322.822201903.669400.287005.359804.36530HepG2ILF2
CDR2ENSG00000140743.31622.010602150.41920-0.406802.531101.58150HepG2KHSRP
CDR2ENSG00000140743.32106.698902866.72800-0.444403.137902.25040HepG2LARP4
CDR2ENSG00000140743.31749.197802268.18580-0.374802.819002.15840HepG2MAGOH
CDR2ENSG00000140743.31349.995902280.86210-0.756608.681807.61460HepG2MATR3
CDR2ENSG00000140743.3979.171501547.13930-0.660004.215802.92870HepG2METAP2
CDR2ENSG00000140743.32374.380201841.136700.366903.955702.99250HepG2MSI2
CDR2ENSG00000140743.31606.426502334.57410-0.539305.144004.29230HepG2NCBP2
CDR2ENSG00000140743.31008.769601445.84100-0.519302.683401.60730HepG2NONO
CDR2ENSG00000140743.31030.094801375.37410-0.417003.585502.73420HepG2NSUN2
CDR2ENSG00000140743.3688.410601105.09330-0.682804.169902.21710HepG2PA2G4
CDR2ENSG00000140743.35143.157802372.927101.1159010.803809.01960HepG2PABPC1
CDR2ENSG00000140743.32698.855602079.021300.376302.916302.17640HepG2PABPC4
CDR2ENSG00000140743.3717.062201222.50600-0.7697012.9530010.54500HepG2PKM
CDR2ENSG00000140743.31301.994301662.23830-0.352404.291803.39510HepG2PPIL4
CDR2ENSG00000140743.3978.342701354.50940-0.469407.147705.97420HepG2PRPF4
CDR2ENSG00000140743.31156.408101629.83840-0.495102.842401.60970HepG2PRPF6
CDR2ENSG00000140743.3830.793001214.04400-0.547305.087304.02580HepG2PRPF8
CDR2ENSG00000140743.31226.417302579.42020-1.0726025.8535024.27930HepG2PUF60
CDR2ENSG00000140743.31324.442602738.21020-1.0478055.2220053.27990HepG2PUM1
CDR2ENSG00000140743.31753.027102736.18420-0.6423012.3292010.97320HepG2PUM2
CDR2ENSG00000140743.31655.464801932.16080-0.223002.690802.08080HepG2PUS1
CDR2ENSG00000140743.33156.589202396.032300.397605.814304.95630HepG2QKI
CDR2ENSG00000140743.33292.185302174.521700.598209.987208.76410HepG2RBM25
CDR2ENSG00000140743.31410.572102462.08240-0.8036024.4311023.14300HepG2NELFE
CDR2ENSG00000140743.31581.752602293.03600-0.5357011.8820010.73890HepG2RECQL
CDR2ENSG00000140743.31412.707502057.30110-0.542307.161706.13910HepG2RPLP0
CDR2ENSG00000140743.31057.648901469.68220-0.474602.616001.69540HepG2RPS10
CDR2ENSG00000140743.3428.331801438.46010-1.7477051.4888049.46190HepG2RPS19
CDR2ENSG00000140743.31215.350001654.08330-0.444704.097503.13220HepG2RPS2
CDR2ENSG00000140743.31198.691802608.23360-1.121606.567205.34180HepG2RPS3A
CDR2ENSG00000140743.31043.014201443.67580-0.469004.118002.97550HepG2SERBP1
CDR2ENSG00000140743.32073.273902473.34760-0.254603.863903.05590HepG2SLBP
CDR2ENSG00000140743.31331.401101935.48030-0.5397014.3801013.09210HepG2SMN1
CDR2ENSG00000140743.32444.162001525.514800.679905.848404.41970HepG2SMNDC1
CDR2ENSG00000140743.33416.201702885.410200.243503.507302.96390HepG2SRFBP1
CDR2ENSG00000140743.31474.442602404.15370-0.7054020.7899019.74830HepG2SRSF1
CDR2ENSG00000140743.31750.724202546.85180-0.5408012.3516011.15670HepG2SRSF5
CDR2ENSG00000140743.32379.565401955.882300.282804.085403.43940HepG2SRSF9
CDR2ENSG00000140743.31267.193202505.14950-0.9833038.8770037.47660HepG2SSB
CDR2ENSG00000140743.31536.847002426.90480-0.659106.807404.93300HepG2SSRP1
CDR2ENSG00000140743.3990.961501519.47550-0.616704.684603.11700HepG2STAU1
CDR2ENSG00000140743.32016.375901398.194000.528103.348902.01940HepG2SUB1
CDR2ENSG00000140743.32562.324302896.42930-0.176802.256501.68430HepG2SUCLG1
CDR2ENSG00000140743.31156.390501567.00280-0.438403.525902.77580HepG2SUPV3L1
CDR2ENSG00000140743.31112.784502160.86730-0.9574028.2029026.65650HepG2TAF15
CDR2ENSG00000140743.31130.451502383.77080-1.076307.054105.43390HepG2TBRG4
CDR2ENSG00000140743.32472.735101985.627300.316403.273002.36870HepG2TIA1
CDR2ENSG00000140743.3501.821801810.94440-1.8515070.3387068.45230HepG2TIAL1
CDR2ENSG00000140743.31952.674102520.05250-0.368004.029802.95090HepG2TUFM
CDR2ENSG00000140743.31805.882302667.48070-0.562805.558904.34800HepG2UBE2L3
CDR2ENSG00000140743.31343.438801763.89490-0.392806.465705.47180HepG2UPF1
CDR2ENSG00000140743.3965.757301434.64330-0.571004.145202.90500HepG2UPF2
CDR2ENSG00000140743.31092.274401813.03080-0.7311017.3197015.06140HepG2UTP18
CDR2ENSG00000140743.31351.407601702.96990-0.333604.496103.76310HepG2UTP3
CDR2ENSG00000140743.3803.964001542.54530-0.9401014.1574012.53700HepG2XRN2
CDR2ENSG00000140743.3736.375101336.73760-0.8602023.5281021.91350HepG2ZC3H8
CDR2ENSG00000140743.33033.742301939.945500.6450024.9859023.75490HepG2ZNF622
CDR2ENSG00000140743.31511.707701122.308100.429604.275703.45940K562AKAP8L
CDR2ENSG00000140743.31942.445701349.194000.525705.963705.15900K562AQR
CDR2ENSG00000140743.31463.499001177.581000.313503.375102.35710K562ATP5C1
CDR2ENSG00000140743.32549.162302051.851900.313003.029702.01030K562CELF1
CDR2ENSG00000140743.31560.204301207.652000.369404.716403.52330K562DKC1
CDR2ENSG00000140743.3626.99580834.11110-0.411804.162803.30770K562EIF2S2
CDR2ENSG00000140743.31053.65520776.788900.439703.861102.89640K562EIF4A3
CDR2ENSG00000140743.3742.21540591.373600.327702.013001.33280K562GPKOW
CDR2ENSG00000140743.3410.51550773.30040-0.9136011.7239010.56960K562HNRNPC
CDR2ENSG00000140743.31067.24640819.489000.381002.620701.42200K562HNRNPK
CDR2ENSG00000140743.31398.003901140.124700.294102.265701.32410K562MAK16
CDR2ENSG00000140743.31672.166401334.258700.325603.223402.22860K562MBNL1
CDR2ENSG00000140743.31386.58320935.220300.568102.351001.55330K562NAA15
CDR2ENSG00000140743.31158.00280990.086400.225902.430001.72630K562NSUN2
CDR2ENSG00000140743.3612.60200821.97620-0.424102.719001.89450K562PCBP3
CDR2ENSG00000140743.3465.39970630.49630-0.438003.235602.36500K562POLR2G
CDR2ENSG00000140743.3473.20110693.35080-0.551103.883902.78460K562PSIP1
CDR2ENSG00000140743.31563.157501936.58140-0.309003.600002.37430K562PUM1
CDR2ENSG00000140743.31527.005001897.14270-0.313103.994802.83840K562PUM2
CDR2ENSG00000140743.31524.983801112.985400.454303.980703.34660K562PUS1
CDR2ENSG00000140743.31614.683701084.466600.574209.401808.33160K562RBM15
CDR2ENSG00000140743.3630.07560845.39380-0.424103.052501.89820K562NELFE
CDR2ENSG00000140743.3816.67910621.114800.394802.151401.43570K562RPS19
CDR2ENSG00000140743.31307.48170977.043900.420205.481704.36170K562SF3A3
CDR2ENSG00000140743.3909.75200707.031700.363603.133202.22230K562SF3B4
CDR2ENSG00000140743.3450.34890666.88400-0.566404.030502.88670K562TIAL1
CDR2ENSG00000140743.31267.588201049.813900.271902.990402.24350K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CDR2 is not available on ENCORE database.





10 RBPs can affect the splicing of CDR2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECDR2ENSG00000140743.3chr16-223762222237633522361021223611702238555122385938-0.198000.002900.04925excludedK562SRSF1
SECDR2ENSG00000140743.3chr16-223762222237633522361021223611702238555122385938-0.155000.000530.01246excludedK562SF3B4
SECDR2ENSG00000140743.3chr16-223762222237633522361021223611702238555122385938-0.167000.000000.00000excludedHepG2U2AF1
SECDR2ENSG00000140743.3chr16-2237622222376335223610212236117022385551223859380.082000.002680.06627includedK562AKAP8L
SECDR2ENSG00000140743.3chr16-223762222237633522361021223611702238555122385938-0.083000.000150.00275excludedHepG2U2AF2
SECDR2ENSG00000140743.3chr16-2237622222376335223610212236117022385551223859380.070000.008590.09366includedK562PUS1
SECDR2ENSG00000140743.3chr16-223762222237633522361021223611702238555122385938-0.123000.002860.05300excludedK562U2AF1
SECDR2ENSG00000140743.3chr16-223762222237633522361021223611702238555122385938-0.070000.002360.05008excludedHepG2SRSF1
SECDR2ENSG00000140743.3chr16-223762222237633522361021223611702238555122385938-0.068000.000310.01218excludedHepG2SF3A3
SECDR2ENSG00000140743.3chr16-2237622222376335223610212236117022385551223859380.092000.000440.01434includedK562RBM15
SECDR2ENSG00000140743.3chr16-223762222237633522361021223611702238555122385938-0.063000.000970.04178excludedHepG2HNRNPU
A3SSCDR2ENSG00000140743.3chr16-2235895422359185223589542235914422360599223607870.074000.000900.00630longerK562AQR
A3SSCDR2ENSG00000140743.3chr16-2236069222360793223606922236078722361021223610940.658000.000070.00427longerHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CDR2 is not avaliable on ENCORE database.