CDK2AP1

General Information

Gene Name       : CDK2AP1
Gene ID             : ENSG00000111328.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CDK2AP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CDK2AP1ENSG00000111328.676.0273.5074.76ENCSR000AEF
HepG2CDK2AP1ENSG00000111328.678.59120.1599.37ENCSR985KAT
K562CDK2AP1ENSG00000111328.662.2967.1864.73ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CDK2AP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CDK2AP1 RNA is bound by 19 proteins.  







eCLIP assay for CDK2AP1 is not avaliable on ENCORE database.





19 proteins are bound to CDK2AP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12123745623123745675-3'-UTR,intron-Distal3.740315.45588K562PUM2
chr12123745761123745806-3'-UTR,intron-Distal,intron-Proximal3.479485.00851HepG2LARP4
chr12123745679123745796-3'-UTR,intron-Distal,intron-Proximal3.998836.78743K562TIA1
chr12123745676123745758-3'-UTR,intron-Distal,intron-Proximal3.582738.34503K562PABPC4
chr12123745622123745804-3'-UTR,intron-Distal,intron-Proximal3.004876.24461K562IGF2BP1
chr12123746274123746351-3'-UTR,CDS,intron-Distal3.809363.61584HepG2SRSF1
chr12123746121123746198-3'-UTR,intron-Distal,intron-Proximal3.370865.72056K562IGF2BP1
chr12123745679123745774-3'-UTR,intron-Distal,intron-Proximal4.932637.12859K562APOBEC3C
chr12123746126123746177-3'-UTR,intron-Distal,intron-Proximal4.716793.83024HepG2IGF2BP1
chr12123745685123745821-3'-UTR,intron-Distal,intron-Proximal3.332296.45501HepG2DDX55
chr12123745796123745896-3'-UTR,intron-Distal,intron-Proximal4.238309.85374K562TIA1
chr12123745810123745952-3'-UTR,intron-Distal,intron-Proximal4.984944.43128HepG2TIA1
chr12123745646123745780-3'-UTR,intron-Distal,intron-Proximal3.703249.68238K562DDX6
chr12123756239123756292-5'-UTR,intron-Distal5.4009527.83502HepG2DDX3X
chr12123755656123755691-5'-UTR,intron-Distal,intron-Proximal4.251044.92128HepG2CSTF2T
chr12123756166123756214-5'-UTR,intron-Distal4.513514.09510K562DHX30
chr12123752714123752762-5'-UTR,intron-Distal,intron-Proximal4.256893.70291HepG2FAM120A
chr12123751831123751929-5'-UTR,intron-Distal,intron-Proximal4.531945.86025HepG2SF3B4
chr12123755547123755603-5'-UTR,intron-Distal3.956156.73995HepG2CSTF2T
chr12123756159123756210-5'-UTR,CDS,intron-Distal4.7983045.35798HepG2DDX3X
chr12123756330123756402-5'-UTR,intron-Distal7.0609638.69939HepG2DDX3X
chr12123756471123756513-5'-UTR,intron-Distal5.2285316.03443HepG2DDX3X
chr12123756210123756239-5'-UTR,intron-Distal4.6338126.85189HepG2DDX3X
chr12123755626123755697-5'-UTR,intron-Distal,intron-Proximal3.018583.62838HepG2FAM120A
chr12123755435123755547-5'-UTR,intron-Distal3.9734113.94892HepG2CSTF2T
chr12123756113123756283-5'-UTR,CDS,intron-Distal6.508389.34374K562GEMIN5
chr12123756292123756327-5'-UTR,intron-Distal5.9827110.32974HepG2DDX3X
chr12123755456123755558-5'-UTR,intron-Distal3.890808.80665HepG2FAM120A
chr12123753682123753740-5'-UTR,intron-Distal3.821255.39685HepG2CSTF2T
chr12123756316123756382-5'-UTR,intron-Distal3.500594.09577HepG2DHX30
chr12123756402123756451-5'-UTR,intron-Distal4.456649.79972HepG2DDX3X
chr12123755459123755534-5'-UTR,intron-Distal4.284685.72424HepG2FKBP4
chr12123755484123755527-5'-UTR,intron-Distal4.338204.15139HepG2NKRF
chr12123752717123752774-5'-UTR,intron-Distal,intron-Proximal3.522936.58651HepG2CSTF2T
chr12123753554123753677-5'-UTR,intron-Distal4.072677.51028HepG2NKRF
chr12123756111123756147-CDS,intron-Distal3.842235.44438HepG2DDX3X
chr12123745449123745510-intron-Distal,intron-Proximal3.983055.67291HepG2U2AF2
chr12123753325123753369-intron-Distal3.652735.39685HepG2CSTF2T
chr12123755839123755904-intron-Distal3.124214.11989HepG2FAM120A
chr12123755008123755066-intron-Distal3.139654.36876HepG2FAM120A
chr12123754643123754696-intron-Distal5.297609.09450HepG2CSTF2T
chr12123755813123755836-intron-Distal3.166083.72734HepG2CSTF2T
chr12123756023123756065-intron-Distal3.551675.32871HepG2CSTF2T
chr12123755315123755388-intron-Distal4.089286.85082HepG2FAM120A
chr12123750467123750533-intron-Distal3.863233.25631HepG2PRPF4
chr12123753539123753607-intron-Distal4.715934.84783HepG2FKBP4
chr12123755013123755043-intron-Distal4.838145.38815HepG2FKBP4
chr12123750599123750704-intron-Distal4.176724.35952HepG2PRPF4
chr12123753550123753636-intron-Distal5.098327.51888HepG2FAM120A
chr12123754402123754423-intron-Distal4.386114.19345HepG2CSTF2T
chr12123755241123755306-intron-Distal5.027317.44133HepG2CSTF2T
chr12123754828123754884-intron-Distal3.752645.56645HepG2CSTF2T
chr12123746356123746404-intron-Distal3.920753.50006HepG2SF3B4
chr12123755306123755407-intron-Distal4.0232013.30012HepG2CSTF2T
chr12123755110123755200-intron-Distal4.216577.10319HepG2CSTF2T
chr12123753503123753621-intron-Distal4.9075015.31340HepG2CSTF2T
chr12123755853123755920-intron-Distal5.197839.23970HepG2CSTF2T
chr12123754554123754608-intron-Distal3.153145.21772HepG2CSTF2T
chr12123755000123755070-intron-Distal4.2521114.41467HepG2CSTF2T
chr12123750606123750703-intron-Distal3.535784.83336HepG2FAM120A
chr12123755974123756039-intron-Distal4.922076.03756HepG2FAM120A
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CDK2AP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CDK2AP1 is not available on ENCORE database.

  • 104 RBPs can affect the levels of CDK2AP1.  








The Knockdown/knockout RNA-Seq assay for CDK2AP1 is not available on ENCORE database.





104 RBPs can affect the gene expression of CDK2AP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CDK2AP1ENSG00000111328.21583.666801100.173600.525404.027303.40250HepG2AKAP1
CDK2AP1ENSG00000111328.2446.85640641.23460-0.521003.207502.08950HepG2AKAP8
CDK2AP1ENSG00000111328.21181.19700910.288200.375802.529301.77660HepG2ASCC1
CDK2AP1ENSG00000111328.21176.699401470.75980-0.321802.390301.74360HepG2AUH
CDK2AP1ENSG00000111328.2885.497001401.85050-0.662808.168507.20510HepG2BOP1
CDK2AP1ENSG00000111328.21275.319001538.44400-0.270602.267101.56380HepG2CALR
CDK2AP1ENSG00000111328.21178.972201711.49980-0.537703.912802.73940HepG2CCAR1
CDK2AP1ENSG00000111328.21110.00810864.840700.360002.423901.69520HepG2CIRBP
CDK2AP1ENSG00000111328.2667.298401286.98790-0.9476013.8134012.41530HepG2CPSF6
CDK2AP1ENSG00000111328.21155.94780888.583100.379404.084002.84410HepG2YBX3
CDK2AP1ENSG00000111328.21177.089201566.24220-0.412107.307406.18720HepG2DAZAP1
CDK2AP1ENSG00000111328.2534.93680834.85070-0.642105.436603.55920HepG2DDX28
CDK2AP1ENSG00000111328.2802.637101101.89020-0.457202.692001.92670HepG2DDX55
CDK2AP1ENSG00000111328.21294.12760905.349200.515303.839003.12090HepG2DDX6
CDK2AP1ENSG00000111328.2399.48080872.57520-1.1272022.9989021.18760HepG2DNAJC21
CDK2AP1ENSG00000111328.2713.73110864.79280-0.277002.752002.10230HepG2DNAJC2
CDK2AP1ENSG00000111328.2864.82430664.617900.379802.413701.56450HepG2EIF3D
CDK2AP1ENSG00000111328.22087.57300936.427501.1565014.2988012.80300HepG2EIF4B
CDK2AP1ENSG00000111328.21169.330101480.23330-0.340102.557901.77280HepG2EIF4G2
CDK2AP1ENSG00000111328.2281.27470594.02460-1.0785015.4537012.77630HepG2FAM120A
CDK2AP1ENSG00000111328.2623.78110828.93230-0.410202.377301.31440HepG2FASTKD2
CDK2AP1ENSG00000111328.2852.291901418.80800-0.735303.897002.99690HepG2FIP1L1
CDK2AP1ENSG00000111328.2129.630201289.16720-3.3140037.4586034.37830HepG2FTO
CDK2AP1ENSG00000111328.21696.12580970.428500.8054010.307909.05640HepG2FXR1
CDK2AP1ENSG00000111328.2616.51430900.16440-0.546104.072603.27360HepG2G3BP1
CDK2AP1ENSG00000111328.2736.396101458.93620-0.9864013.0285011.73720HepG2GPKOW
CDK2AP1ENSG00000111328.2570.69460880.93390-0.626306.409805.48550HepG2HNRNPA1
CDK2AP1ENSG00000111328.2531.58210979.85040-0.8823011.5869010.25270HepG2HNRNPC
CDK2AP1ENSG00000111328.2870.746201210.52780-0.475306.831905.77290HepG2HNRNPF
CDK2AP1ENSG00000111328.21419.43190911.615500.638707.236906.14760HepG2HNRNPK
CDK2AP1ENSG00000111328.2983.095501392.28650-0.502104.472803.69040HepG2HNRNPLL
CDK2AP1ENSG00000111328.21018.06760698.126300.544203.601702.19850HepG2HSPD1
CDK2AP1ENSG00000111328.2991.293501192.02420-0.266002.036101.40870HepG2IGF2BP1
CDK2AP1ENSG00000111328.2678.27940994.27380-0.551809.548508.26810HepG2ILF2
CDK2AP1ENSG00000111328.2372.06600593.59900-0.673903.980402.36450HepG2ILF3
CDK2AP1ENSG00000111328.2720.21710868.31830-0.269802.568301.58470HepG2KIF1C
CDK2AP1ENSG00000111328.22527.256201806.995400.483903.515602.57790HepG2LARP4
CDK2AP1ENSG00000111328.2672.045301148.85220-0.773603.999003.03050HepG2MSI2
CDK2AP1ENSG00000111328.2676.96210964.56120-0.510802.513701.35760HepG2NAA15
CDK2AP1ENSG00000111328.21092.256501553.08550-0.507807.108205.89510HepG2NOL12
CDK2AP1ENSG00000111328.2336.78740556.50790-0.724603.725002.68240HepG2PABPC1
CDK2AP1ENSG00000111328.2662.48640889.76560-0.425502.799102.07330HepG2PABPC4
CDK2AP1ENSG00000111328.2486.94900889.41430-0.8691016.4085015.13260HepG2PCBP1
CDK2AP1ENSG00000111328.2507.86120854.71820-0.751006.024203.66010HepG2PHF6
CDK2AP1ENSG00000111328.2425.02050549.62440-0.370902.472301.31470HepG2PKM
CDK2AP1ENSG00000111328.2605.67990868.17640-0.519406.156505.09050HepG2PPIL4
CDK2AP1ENSG00000111328.2728.084401572.67150-1.1110026.7348024.78690HepG2PUM2
CDK2AP1ENSG00000111328.2690.67760980.17380-0.505005.666204.81840HepG2QKI
CDK2AP1ENSG00000111328.2947.867501453.75530-0.617009.667908.19820HepG2RBM15
CDK2AP1ENSG00000111328.21159.39660872.257700.410402.780201.71750HepG2RCC2
CDK2AP1ENSG00000111328.21249.215501007.185600.310603.090002.52470HepG2NELFE
CDK2AP1ENSG00000111328.21117.96200938.023300.253102.164901.61080HepG2RECQL
CDK2AP1ENSG00000111328.2932.081101304.03700-0.484504.708703.84900HepG2RPLP0
CDK2AP1ENSG00000111328.21088.01700841.024600.371402.381801.64610HepG2RRP9
CDK2AP1ENSG00000111328.2651.573401038.13150-0.672004.321602.39490HepG2RTF1
CDK2AP1ENSG00000111328.2686.73720866.84780-0.336003.449502.74440HepG2SAFB2
CDK2AP1ENSG00000111328.22329.926401107.669701.0727013.6067012.04710HepG2SF3A3
CDK2AP1ENSG00000111328.21015.542901378.10890-0.440403.554402.76320HepG2SF3B1
CDK2AP1ENSG00000111328.21194.46260942.251200.342103.595702.93400HepG2SF3B4
CDK2AP1ENSG00000111328.2615.133601533.38050-1.3177014.8700013.07820HepG2SNRNP70
CDK2AP1ENSG00000111328.2891.620601594.06020-0.838209.175508.40940HepG2SRFBP1
CDK2AP1ENSG00000111328.21190.03080983.490100.274902.545302.08660HepG2SRSF1
CDK2AP1ENSG00000111328.2820.204101482.79230-0.854308.875406.99540HepG2SRSF3
CDK2AP1ENSG00000111328.21844.032001463.843700.333004.689003.91060HepG2SRSF5
CDK2AP1ENSG00000111328.2779.179401189.30410-0.6101010.448409.24540HepG2SRSF7
CDK2AP1ENSG00000111328.2439.20500695.65400-0.663505.107203.42300HepG2SSRP1
CDK2AP1ENSG00000111328.2548.07580948.18390-0.790804.407002.87720HepG2STAU1
CDK2AP1ENSG00000111328.21135.281101664.77570-0.5523012.0024010.86190HepG2SUCLG1
CDK2AP1ENSG00000111328.2432.53750704.22100-0.703204.930103.15840HepG2SUGP2
CDK2AP1ENSG00000111328.2732.300601096.96260-0.583004.196503.38770HepG2SUPV3L1
CDK2AP1ENSG00000111328.21257.43190883.954500.508306.909506.09350HepG2TAF15
CDK2AP1ENSG00000111328.2768.93850945.91100-0.298802.331901.86490HepG2TIAL1
CDK2AP1ENSG00000111328.2573.127501533.16700-1.4196023.8041021.41230HepG2UBE2L3
CDK2AP1ENSG00000111328.2681.10060982.33050-0.528307.661706.59500HepG2UPF1
CDK2AP1ENSG00000111328.21190.35290948.406400.327703.690503.01440HepG2UTP3
CDK2AP1ENSG00000111328.2362.79320547.56320-0.593903.441802.20950HepG2XPO5
CDK2AP1ENSG00000111328.2647.42760938.31270-0.535302.990201.67510HepG2XRCC5
CDK2AP1ENSG00000111328.21571.822801080.380000.5408012.4416011.49010HepG2ZNF622
CDK2AP1ENSG00000111328.2849.99530472.036300.8485014.2856013.09940K562AGGF1
CDK2AP1ENSG00000111328.2725.35640491.169200.562403.103102.41000K562AKAP8L
CDK2AP1ENSG00000111328.2679.32410515.343400.398503.219602.22960K562ATP5C1
CDK2AP1ENSG00000111328.2691.58160923.72840-0.417602.960002.05660K562BOP1
CDK2AP1ENSG00000111328.2510.55760683.04580-0.419902.917101.59890K562CIRBP
CDK2AP1ENSG00000111328.2538.57590909.96920-0.756704.428703.03830K562CNOT7
CDK2AP1ENSG00000111328.2671.29260982.18130-0.549006.116304.95450K562CPSF6
CDK2AP1ENSG00000111328.21321.950601071.493400.302903.320402.61630K562DDX47
CDK2AP1ENSG00000111328.2798.81370528.570500.595707.294105.75830K562DKC1
CDK2AP1ENSG00000111328.2799.94090573.882900.479003.102502.00390K562EIF3D
CDK2AP1ENSG00000111328.2620.45310455.354600.446203.461402.57670K562EIF3G
CDK2AP1ENSG00000111328.2302.08420498.40320-0.722406.356305.12070K562EIF4A3
CDK2AP1ENSG00000111328.21534.047801226.620100.322603.588802.52040K562EIF4G2
CDK2AP1ENSG00000111328.2201.95620847.05330-2.0684040.7889037.44610K562FTO
CDK2AP1ENSG00000111328.2765.52540518.316200.562506.382805.52030K562FXR1
CDK2AP1ENSG00000111328.2381.57070537.35770-0.493902.914701.44970K562GEMIN5
CDK2AP1ENSG00000111328.2692.78840937.73590-0.436803.619902.71640K562GPKOW
CDK2AP1ENSG00000111328.2523.89460748.40100-0.514504.765203.37010K562HNRNPA1
CDK2AP1ENSG00000111328.2234.13720598.08500-1.3530019.2607017.76370K562HNRNPC
CDK2AP1ENSG00000111328.2348.40930534.13610-0.616404.738803.19570K562HNRNPF
CDK2AP1ENSG00000111328.21022.67220721.125300.503903.029402.04930K562HNRNPM
CDK2AP1ENSG00000111328.2695.12670521.274100.415102.843002.00490K562KIF1C
CDK2AP1ENSG00000111328.2579.79340800.72410-0.465802.618901.71410K562KRR1
CDK2AP1ENSG00000111328.2587.71500745.66670-0.343403.106902.25150K562MTPAP
CDK2AP1ENSG00000111328.2730.97370409.308900.836506.413904.85870K562NAA15
CDK2AP1ENSG00000111328.21583.952301260.392700.329602.784901.33960K562PNPT1
CDK2AP1ENSG00000111328.2389.65170536.25850-0.460703.127702.15950K562PSIP1
CDK2AP1ENSG00000111328.21953.303001338.328200.545405.992304.79570K562PUF60
CDK2AP1ENSG00000111328.2739.72800487.147700.602505.116804.40690K562PUS1
CDK2AP1ENSG00000111328.2824.18390474.616700.7961011.2446010.06960K562RBM15
CDK2AP1ENSG00000111328.2504.36860656.54120-0.380402.290301.31750K562NELFE
CDK2AP1ENSG00000111328.2700.08020531.286100.397902.230801.50120K562RPS19
CDK2AP1ENSG00000111328.2534.16870364.846400.549903.236302.14520K562RPS3
CDK2AP1ENSG00000111328.2668.54650503.739500.408302.798301.70920K562SAFB
CDK2AP1ENSG00000111328.2615.75950837.52840-0.443805.352604.10080K562SRPK2
CDK2AP1ENSG00000111328.2500.17090638.00700-0.351201.978901.36870K562SRSF1
CDK2AP1ENSG00000111328.2310.17730505.00520-0.703204.849503.47300K562SUPV3L1
CDK2AP1ENSG00000111328.2863.10770567.030800.606006.913105.60160K562SYNCRIP
CDK2AP1ENSG00000111328.2469.72850645.63300-0.458903.141302.38740K562TARDBP
CDK2AP1ENSG00000111328.2681.20700515.783600.401202.332401.47850K562TIAL1
CDK2AP1ENSG00000111328.2363.86130534.48070-0.554703.630702.45200K562UCHL5
CDK2AP1ENSG00000111328.2792.19680493.873800.681603.067501.67880K562UTP18
CDK2AP1ENSG00000111328.2535.14160751.74530-0.490304.417403.30220K562WDR3
CDK2AP1ENSG00000111328.2930.55780781.674100.251402.186401.42710K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CDK2AP1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CDK2AP1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CDK2AP1 is not avaliable on ENCORE database.