CDH24

General Information

Gene Name       : CDH24
Gene ID             : ENSG00000139880.19
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CDH24)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CDH24ENSG00000139880.190.420.310.36ENCSR000AEF
HepG2CDH24ENSG00000139880.193.431.222.33ENCSR985KAT
K562CDH24ENSG00000139880.196.645.476.05ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CDH24 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CDH24 RNA is bound by 10 proteins.  







eCLIP assay for CDH24 is not avaliable on ENCORE database.





10 proteins are bound to CDH24 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr142352439623524460-CDS,intron-Distal4.528996.26288K562YBX3
chr142351889923518968-CDS,intron-Distal,intron-Proximal6.004258.45613K562EFTUD2
chr142351934723519434-intron-Distal,intron-Proximal3.847166.42186K562TARDBP
chr142351965823519732-intron-Distal3.409984.05658K562DDX6
chr142352027123520324-intron-Distal4.147207.77879K562TARDBP
chr142351933923519448-intron-Distal,intron-Proximal5.7694114.70097K562RBFOX2
chr142351932523519483-intron-Distal,intron-Proximal5.1414019.04608K562KHSRP
chr142351958023519737-intron-Distal4.6266912.63305K562RBFOX2
chr142351963723519701-intron-Distal5.409719.04913K562DROSHA
chr142352113623521162-intron-Distal,intron-Proximal3.768384.49024K562AQR
chr142352367323523706-intron-Distal,intron-Proximal4.743364.65563K562AQR
chr142351964123519771-intron-Distal6.6253518.92481K562EIF4G2
chr142352620223526288-intron-Distal5.193545.89856K562PTBP1
chr142352370623523714-intron-Distal,intron-Proximal4.292563.11721K562AQR
chr142351937323519489-intron-Distal,intron-Proximal5.7076414.19934K562DROSHA
chr142352020223520248-intron-Distal4.661186.25975K562TARDBP
chr142351982023519908-intron-Distal4.4407310.61026K562EIF4G2
chr142351965323519714-intron-Distal4.289609.51639K562TARDBP
chr142352087323520946-intron-Distal4.617456.25975K562TARDBP
chr142351938123519486-intron-Distal,intron-Proximal3.725323.98726HepG2RBFOX2
chr142351958723519673-intron-Distal5.076046.07369HepG2RBFOX2
chr142351924723519313-intron-Distal,intron-Proximal5.153139.71683K562KHSRP
chr142351981523519901-intron-Distal3.658146.05428K562RBFOX2
chr142352116223521179-intron-Distal,intron-Proximal3.538673.04871K562AQR
chr142352163323521682-intron-Distal,intron-Proximal5.486078.34710K562AQR
chr142351944723519531-intron-Distal,intron-Proximal5.152288.89278K562TARDBP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CDH24 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CDH24 is not available on ENCORE database.

  • 107 RBPs can affect the levels of CDH24.  








The Knockdown/knockout RNA-Seq assay for CDH24 is not available on ENCORE database.





107 RBPs can affect the gene expression of CDH24 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CDH24ENSG00000139880.15166.7610044.103601.9187014.7319013.56410HepG2ACO1
CDH24ENSG00000139880.1592.8064033.083701.488002.499801.99170HepG2AKAP1
CDH24ENSG00000139880.1560.9207021.480201.503803.614902.43140HepG2AKAP8
CDH24ENSG00000139880.1585.5623044.301000.949502.920002.13280HepG2AKAP8L
CDH24ENSG00000139880.15142.7214071.075101.005704.912404.04010HepG2AUH
CDH24ENSG00000139880.1549.96170133.83880-1.421605.631304.81390HepG2BOP1
CDH24ENSG00000139880.15309.23780132.272701.225108.192306.50690HepG2CCAR1
CDH24ENSG00000139880.1546.62930122.87820-1.397904.815103.92920HepG2CPSF6
CDH24ENSG00000139880.15146.4388069.876201.067305.532204.68160HepG2CELF1
CDH24ENSG00000139880.1533.8927075.12400-1.148303.471002.65820HepG2DAZAP1
CDH24ENSG00000139880.1520.6472055.05300-1.414903.192702.20970HepG2DDX24
CDH24ENSG00000139880.1518.9729069.44750-1.872005.903404.06540HepG2DDX47
CDH24ENSG00000139880.15244.2288063.576301.9416012.5897011.08820HepG2DDX55
CDH24ENSG00000139880.1566.31290139.53490-1.073303.424602.33980HepG2DDX59
CDH24ENSG00000139880.1517.7100042.19220-1.252402.239601.61950HepG2DKC1
CDH24ENSG00000139880.15111.3475057.444900.954703.318702.03030HepG2EIF2S2
CDH24ENSG00000139880.159.7693028.91200-1.565302.112701.55100HepG2EIF4A3
CDH24ENSG00000139880.1575.8160028.160001.428803.434302.67070HepG2EIF4B
CDH24ENSG00000139880.1533.3368074.12310-1.152803.221502.33230HepG2EIF4G1
CDH24ENSG00000139880.15297.4033076.441501.9599015.3694013.79940HepG2FIP1L1
CDH24ENSG00000139880.15204.3354061.137901.7407011.352709.32210HepG2FUS
CDH24ENSG00000139880.15141.1619029.187002.2739012.2297010.87940HepG2FXR1
CDH24ENSG00000139880.15111.0999027.066802.037209.435208.24290HepG2G3BP1
CDH24ENSG00000139880.15115.0816055.203101.059703.330502.20800HepG2GNB2L1
CDH24ENSG00000139880.1560.23940139.31080-1.209502.827402.18050HepG2GPKOW
CDH24ENSG00000139880.1554.76220102.42760-0.903402.936002.19830HepG2HNRNPF
CDH24ENSG00000139880.1571.8728027.427301.389703.518402.73580HepG2HNRNPK
CDH24ENSG00000139880.1545.72630132.94520-1.539705.977105.08900HepG2HNRNPLL
CDH24ENSG00000139880.1580.1748023.348601.779705.264503.59310HepG2HSPD1
CDH24ENSG00000139880.1558.36910100.86390-0.789102.257201.60010HepG2IGF2BP1
CDH24ENSG00000139880.1543.8207073.10040-0.738302.055701.41300HepG2ILF2
CDH24ENSG00000139880.15231.22700139.755500.726302.762801.93240HepG2LARP4
CDH24ENSG00000139880.15322.6484061.894302.3820028.1930026.06160HepG2MSI2
CDH24ENSG00000139880.1539.41920135.54570-1.781807.013805.43370HepG2MTPAP
CDH24ENSG00000139880.1516.20650117.86770-2.8625011.6986010.26100HepG2NSUN2
CDH24ENSG00000139880.15144.5535023.721202.6073018.0146016.84840HepG2PTBP1
CDH24ENSG00000139880.15187.3969075.435901.312708.449907.30610HepG2PUM2
CDH24ENSG00000139880.1588.4209044.920700.976903.203802.55260HepG2PUS1
CDH24ENSG00000139880.15283.3727068.200902.0547018.4154017.31750HepG2RBM22
CDH24ENSG00000139880.15109.1428026.400002.047509.056008.17940HepG2NELFE
CDH24ENSG00000139880.1554.5014024.586901.148302.338001.76480HepG2RECQL
CDH24ENSG00000139880.1538.29890110.31010-1.526206.006705.05680HepG2RPLP0
CDH24ENSG00000139880.158.6261054.88630-2.669703.758502.65850HepG2RPS10
CDH24ENSG00000139880.15162.6407044.313601.8758011.7472010.58660HepG2RPS19
CDH24ENSG00000139880.15125.5753060.178201.061103.327002.44960HepG2RPS2
CDH24ENSG00000139880.1531.5948063.73080-1.012302.504601.88640HepG2SAFB2
CDH24ENSG00000139880.1536.34960131.60030-1.856207.655506.53290HepG2SF3B1
CDH24ENSG00000139880.1560.7721024.698101.298903.016102.40200HepG2SF3B4
CDH24ENSG00000139880.15149.0378040.789201.869304.849102.84970HepG2SFPQ
CDH24ENSG00000139880.15145.8805074.320500.972904.705103.90310HepG2SMN1
CDH24ENSG00000139880.1532.92510146.42450-2.152909.577608.13280HepG2SNRNP70
CDH24ENSG00000139880.1571.20750141.57150-0.991403.380502.26390HepG2SRSF3
CDH24ENSG00000139880.1537.46420100.62490-1.425405.680404.74050HepG2SRSF7
CDH24ENSG00000139880.15269.4750079.853701.7546019.7002018.28230HepG2SUCLG1
CDH24ENSG00000139880.15135.9562063.282101.103203.235602.51140HepG2SUPV3L1
CDH24ENSG00000139880.15133.3575043.517201.615502.194001.32740HepG2U2AF2
CDH24ENSG00000139880.15134.6945057.928101.217303.682702.50970HepG2UPF2
CDH24ENSG00000139880.15208.3855043.648502.2552021.0536019.63150HepG2UTP3
CDH24ENSG00000139880.15567.64540297.902900.930004.083101.98250K562ADAR
CDH24ENSG00000139880.15794.73700439.707200.8538014.4774013.28360K562AGGF1
CDH24ENSG00000139880.15358.52330249.305800.524103.757001.97220K562AKAP1
CDH24ENSG00000139880.15743.68900457.543700.700703.033002.34830K562AKAP8L
CDH24ENSG00000139880.15412.48660249.993700.722406.402104.91680K562BCLAF1
CDH24ENSG00000139880.15439.83090291.725900.592204.131902.79180K562CCAR1
CDH24ENSG00000139880.15675.46020525.446900.362202.789901.60830K562CCDC124
CDH24ENSG00000139880.15796.31430473.476000.749906.598704.26150K562CKAP4
CDH24ENSG00000139880.15670.23880408.304900.714907.373106.08570K562CPSF6
CDH24ENSG00000139880.15328.99930189.657500.794605.456503.89510K562CSTF2
CDH24ENSG00000139880.15948.99900704.736100.429203.697202.56470K562CELF1
CDH24ENSG00000139880.15723.70980562.529400.363402.740201.53480K562DDX21
CDH24ENSG00000139880.15395.29460252.603200.646004.837003.40510K562DDX3X
CDH24ENSG00000139880.15699.35770556.110300.330602.776102.12390K562DDX47
CDH24ENSG00000139880.15357.47290256.103800.481003.075101.67690K562DDX6
CDH24ENSG00000139880.15489.82600326.603200.584604.011602.36120K562DHX30
CDH24ENSG00000139880.15405.33560277.452400.546804.363802.81780K562EIF2S1
CDH24ENSG00000139880.15447.34560313.137300.514503.957103.12070K562EIF2S2
CDH24ENSG00000139880.15444.49960296.729100.582902.401801.47100K562EIF3A
CDH24ENSG00000139880.15393.31200253.487200.633702.685501.66680K562EIF3D
CDH24ENSG00000139880.15794.20900573.096700.470604.678103.46920K562EIF4G2
CDH24ENSG00000139880.15643.14890465.132800.467403.730102.22560K562EXOSC5
CDH24ENSG00000139880.15469.64930354.211300.406902.203201.44580K562FIP1L1
CDH24ENSG00000139880.15609.29680415.461000.552303.900102.88060K562FMR1
CDH24ENSG00000139880.15499.67220352.149600.504702.927501.98610K562FTO
CDH24ENSG00000139880.1539.24880136.87460-1.802104.483003.53860K562G3BP2
CDH24ENSG00000139880.15598.26170436.114000.456003.843802.50630K562GLRX3
CDH24ENSG00000139880.15598.51330389.822200.618505.069203.99830K562GPKOW
CDH24ENSG00000139880.15942.29790417.288601.1750011.001809.46670K562GRSF1
CDH24ENSG00000139880.15564.20710412.063900.453302.809601.72990K562HNRNPA1
CDH24ENSG00000139880.15660.79970317.642501.0567013.4925012.25840K562HNRNPC
CDH24ENSG00000139880.15365.73560183.929500.991504.903203.36970K562IGF2BP2
CDH24ENSG00000139880.15534.27240332.881700.682504.077802.92490K562KRR1
CDH24ENSG00000139880.15303.76140193.078900.653603.751302.76350K562MAGOH
CDH24ENSG00000139880.15310.24470192.653200.687303.738602.65360K562MATR3
CDH24ENSG00000139880.15709.89510543.930200.384102.831301.90920K562MBNL1
CDH24ENSG00000139880.15580.13300380.513600.608305.156503.93920K562METAP2
CDH24ENSG00000139880.15824.04660458.517600.8456014.8150013.12470K562MTPAP
CDH24ENSG00000139880.15790.43830509.451100.633609.737908.45350K562NSUN2
CDH24ENSG00000139880.15853.23640527.372600.694002.451201.30800K562PABPC1
CDH24ENSG00000139880.15491.65500284.817800.787506.843505.30900K562PSIP1
CDH24ENSG00000139880.15394.22250187.605001.071209.766408.57430K562PTBP1
CDH24ENSG00000139880.15478.95590625.28240-0.384602.077101.37030K562PUF60
CDH24ENSG00000139880.15974.16340453.697701.102306.244005.46770K562PUS1
CDH24ENSG00000139880.15672.59950442.109900.605206.625105.73360K562RBM15
CDH24ENSG00000139880.15632.24530502.702900.330702.344701.58870K562SF3A3
CDH24ENSG00000139880.15590.70690370.765600.671804.669503.38540K562SF3B1
CDH24ENSG00000139880.15769.23330403.908100.929304.470102.65100K562SFPQ
CDH24ENSG00000139880.15533.21960321.277600.730806.377904.46140K562SLBP
CDH24ENSG00000139880.15461.14580246.413000.904007.924005.92760K562SRFBP1
CDH24ENSG00000139880.15713.98570515.030400.471105.116103.88920K562SRPK2
CDH24ENSG00000139880.15305.37830183.940600.731304.720403.80150K562SRSF1
CDH24ENSG00000139880.15741.17880545.560400.442003.543601.84150K562SUCLG1
CDH24ENSG00000139880.15267.56790186.105700.523702.393801.73330K562TARDBP
CDH24ENSG00000139880.15290.52590179.534200.694304.257903.21060K562TIA1
CDH24ENSG00000139880.15580.66240273.936501.0838011.287309.28470K562TIAL1
CDH24ENSG00000139880.15315.50350176.304600.839503.233902.03650K562TRA2A
CDH24ENSG00000139880.15526.08170291.119000.853607.142205.46720K562TRIM56
CDH24ENSG00000139880.15828.33020629.724200.395403.950802.43230K562TROVE2
CDH24ENSG00000139880.15359.22590236.115200.605302.696801.69190K562UCHL5
CDH24ENSG00000139880.15788.33960540.182000.545306.593005.53820K562UPF1
CDH24ENSG00000139880.15741.65160460.063000.688802.760501.47080K562UTP18
CDH24ENSG00000139880.15695.99510480.654100.534006.557405.30650K562WDR43
CDH24ENSG00000139880.15779.45850551.635900.498704.320802.69890K562WRN
CDH24ENSG00000139880.15384.21910240.568600.675402.624101.45540K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CDH24 is not available on ENCORE database.





2 RBPs can affect the splicing of CDH24 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECDH24ENSG00000139880.15chr14-235211782352129223519030235191522352168123521818-0.315000.007920.06751excludedK562AQR
SECDH24ENSG00000139880.15chr14-235211782352129223519030235191522352168123521818-0.518000.000000.00152excludedK562ZC3H8
A3SSCDH24ENSG00000139880.15chr14-2352334923523590235233492352353723523714235238820.147000.013530.06851longerK562AQR
RICDH24ENSG00000139880.15chr14-2351883523519041235188352351894723519030235190410.186000.015600.07917includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CDH24 is not avaliable on ENCORE database.