CCNH

General Information

Gene Name       : CCNH
Gene ID             : ENSG00000134480.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CCNH)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCNHENSG00000134480.1464.4258.2261.32ENCSR000AEF
HepG2CCNHENSG00000134480.1435.3455.1745.26ENCSR985KAT
K562CCNHENSG00000134480.1490.79100.5695.68ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCNH is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCNH RNA is bound by 21 proteins.  







eCLIP assay for CCNH is not avaliable on ENCORE database.





21 proteins are bound to CCNH RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr58669025786690308-3'-UTR,CDS,intron-Distal,intron-Proximal3.033045.12804K562GPKOW
chr58669020086690254-3'-UTR,intron-Distal,intron-Proximal4.148834.83285K562GRWD1
chr58669020386690302-3'-UTR,CDS,intron-Distal,intron-Proximal3.582408.57930HepG2BCLAF1
chr58669062786690676-3'-UTR,intron-Distal3.223463.78727K562PRPF8
chr58669008886690145-3'-UTR,intron-Distal,intron-Proximal,polyA_site4.018527.81467HepG2U2AF2
chr58669022086690301-3'-UTR,CDS,intron-Distal,intron-Proximal3.2396913.40685K562ZNF622
chr58669008086690139-3'-UTR,intron-Distal,intron-Proximal,polyA_site3.139614.12564K562CSTF2T
chr58669069286690743-3'-UTR,intron-Distal3.276757.52282K562PRPF8
chr58669077486690830-3'-UTR,CDS,intron-Distal,intron-Proximal3.320853.24842K562RBM22
chr58669077186690829-3'-UTR,CDS,intron-Distal,intron-Proximal3.848617.75987K562PRPF8
chr58669020186690261-3'-UTR,intron-Distal,intron-Proximal4.215044.01763HepG2GRWD1
chr58670703986707075-5'-UTR,CDS,intron-Distal,intron-Proximal4.515934.50440HepG2PPIG
chr58670708286707135-5'-UTR,CDS,intron-Distal,intron-Proximal3.026863.47139K562GRWD1
chr58670710986707166-5'-UTR,CDS,intron-Distal,intron-Proximal4.918757.48177K562BUD13
chr58670844886708494-5'-UTR,intron-Distal5.365986.22530K562AQR
chr58670066186700686-CDS,intron-Distal3.6357112.55679K562YBX3
chr58670379286703864-CDS,intron-Distal,intron-Proximal5.069216.30939K562IGF2BP1
chr58669089186690911-CDS,intron-Distal3.024188.78789K562ZNF622
chr58669520886695285-CDS,intron-Distal,intron-Proximal3.033036.23940HepG2PPIG
chr58669084286690917-CDS,intron-Distal,intron-Proximal3.108189.07205HepG2BCLAF1
chr58670397686704029-CDS,intron-Distal,intron-Proximal3.189973.80334HepG2U2AF2
chr58669085886690900-CDS,intron-Distal,intron-Proximal3.389445.97026K562PUM1
chr58669083686690857-CDS,intron-Distal,intron-Proximal3.214574.87883K562BUD13
chr58669085886690891-CDS,intron-Distal,intron-Proximal3.9421715.86208K562ZNF622
chr58669085386690889-CDS,intron-Distal,intron-Proximal3.557455.58370HepG2PPIG
chr58670414986704223-intron-Distal3.181845.42536K562KHSRP
chr58668856186688639-intron-Distal4.603275.61812HepG2CSTF2
chr58668841886688551-intron-Distal,intron-Proximal3.682065.86270K562TIA1
chr58669779686697907-intron-Distal3.799516.69500K562KHSRP
chr58668868086688776-intron-Distal4.2924110.97054K562SF3B4
chr58668867586688768-intron-Distal3.635658.36335HepG2U2AF2
chr58669540086695505-intron-Distal,intron-Proximal3.242493.68839K562KHSRP
chr58669092486690962-intron-Distal,intron-Proximal4.094173.78820K562GPKOW
chr58668868886688781-intron-Distal3.124395.54564K562SMNDC1
chr58668892586688992-intron-Distal3.366074.13575K562KHSRP
chr58670409986704149-intron-Distal,intron-Proximal4.202914.58794K562KHSRP
chr58669512486695157-intron-Distal,intron-Proximal4.160703.49003K562PRPF8
chr58668856086688638-intron-Distal4.6376812.30805K562CSTF2T
chr58668865186688722-intron-Distal4.353204.47532K562U2AF2
chr58668822186688292-intron-Distal3.385473.73364K562SAFB2
chr58668770686687779-intron-Distal3.560244.88138K562KHDRBS1
chr58668870686688720-intron-Distal3.255563.36945K562ZNF622
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCNH is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCNH is not available on ENCORE database.

  • 88 RBPs can affect the levels of CCNH.  








The Knockdown/knockout RNA-Seq assay for CCNH is not available on ENCORE database.





88 RBPs can affect the gene expression of CCNH :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCNHENSG00000134480.91261.79810912.006400.468303.162702.59880HepG2AKAP1
CCNHENSG00000134480.9518.51050754.63000-0.541403.896802.97190HepG2ASCC1
CCNHENSG00000134480.9510.92440648.44110-0.343901.996001.48020HepG2BOP1
CCNHENSG00000134480.9574.90110390.843900.556602.564801.82990HepG2CNOT7
CCNHENSG00000134480.9376.22050595.30190-0.662005.121704.21150HepG2CPSF6
CCNHENSG00000134480.9630.63710757.12960-0.263702.168901.50020HepG2DAZAP1
CCNHENSG00000134480.9494.27680750.40070-0.602304.153303.40800HepG2DDX6
CCNHENSG00000134480.9384.79610487.57270-0.341502.572901.93980HepG2DNAJC2
CCNHENSG00000134480.9314.15200721.48500-1.1995014.5434013.25200HepG2EIF2S1
CCNHENSG00000134480.9478.02070797.37730-0.738206.177905.22680HepG2EIF4A3
CCNHENSG00000134480.9577.94330776.26030-0.425602.009901.41800HepG2EIF4B
CCNHENSG00000134480.9733.36680945.38700-0.366403.620402.94690HepG2ETF1
CCNHENSG00000134480.9560.36150804.36430-0.521503.724802.93200HepG2FXR1
CCNHENSG00000134480.9518.40650792.13050-0.611704.978603.77490HepG2G3BP2
CCNHENSG00000134480.9338.04670508.13560-0.588003.403702.26870HepG2GNB2L1
CCNHENSG00000134480.9502.24060674.81480-0.426102.396101.79650HepG2GPKOW
CCNHENSG00000134480.9304.99650496.64600-0.703405.670404.78870HepG2HNRNPA1
CCNHENSG00000134480.9385.57070552.42130-0.518803.481202.70950HepG2HNRNPC
CCNHENSG00000134480.9506.14620701.03480-0.469904.457003.57120HepG2HNRNPF
CCNHENSG00000134480.9497.59760755.45200-0.602404.983004.06610HepG2HNRNPK
CCNHENSG00000134480.9473.97840690.32730-0.542504.750503.82490HepG2IGF2BP1
CCNHENSG00000134480.9719.022601018.18220-0.501903.134402.24760HepG2LARP4
CCNHENSG00000134480.9577.45970804.64440-0.478603.248802.53850HepG2MAGOH
CCNHENSG00000134480.9405.66240656.79870-0.695204.181002.97490HepG2MTPAP
CCNHENSG00000134480.9609.78440828.25450-0.441802.719102.09100HepG2NCBP2
CCNHENSG00000134480.9372.44700571.02380-0.616504.365503.43110HepG2NSUN2
CCNHENSG00000134480.9506.27680737.70940-0.543103.834302.99580HepG2PABPC4
CCNHENSG00000134480.9568.71640716.67540-0.333602.119201.58780HepG2PUF60
CCNHENSG00000134480.9602.06820760.22740-0.336502.407201.78110HepG2PUM2
CCNHENSG00000134480.9612.56750477.932300.358002.995802.36150HepG2PUS1
CCNHENSG00000134480.9704.56190491.349100.519902.180701.54830HepG2RAVER1
CCNHENSG00000134480.9554.00580809.34640-0.546906.332505.56940HepG2NELFE
CCNHENSG00000134480.9504.83970753.80460-0.578406.855905.94870HepG2RECQL
CCNHENSG00000134480.9592.33860488.706700.277401.981001.42120HepG2SAFB2
CCNHENSG00000134480.9395.27380637.41800-0.689406.015205.00800HepG2SF3B1
CCNHENSG00000134480.9489.31730757.14320-0.629807.835706.92150HepG2SF3B4
CCNHENSG00000134480.9960.04140709.240600.436702.039901.37360HepG2SNRNP70
CCNHENSG00000134480.9531.88170688.71540-0.372802.972302.25480HepG2SRSF7
CCNHENSG00000134480.9508.30770642.95280-0.339002.858002.29910HepG2SRSF9
CCNHENSG00000134480.9481.50880774.83290-0.6863010.282309.41390HepG2SSB
CCNHENSG00000134480.9338.55880494.36940-0.546203.993702.87460HepG2SUPT6H
CCNHENSG00000134480.9364.38640533.25280-0.549404.657204.04300HepG2TIAL1
CCNHENSG00000134480.9425.42470537.99740-0.338702.580302.03150HepG2TRIM56
CCNHENSG00000134480.9448.20430938.57890-1.066302.702901.72610HepG2U2AF2
CCNHENSG00000134480.9769.15500608.011000.339102.874502.26750HepG2UTP3
CCNHENSG00000134480.92055.895302652.83670-0.367803.367202.00100K562ABCF1
CCNHENSG00000134480.92885.440602001.982400.527307.034305.95300K562AKAP8L
CCNHENSG00000134480.9935.386302328.67760-1.3159031.1721029.39660K562AQR
CCNHENSG00000134480.92593.138002100.563100.303803.802102.71810K562ATP5C1
CCNHENSG00000134480.91205.679901536.81710-0.350104.130302.47270K562BCCIP
CCNHENSG00000134480.91105.286001485.08450-0.426106.459404.96900K562BCLAF1
CCNHENSG00000134480.9922.759901809.66460-0.9717016.0231013.88870K562BOP1
CCNHENSG00000134480.9663.68700859.64830-0.373202.401001.43360K562CCAR1
CCNHENSG00000134480.91611.207702299.25100-0.513003.258601.96390K562CCDC124
CCNHENSG00000134480.92334.438002766.06750-0.244802.843101.71780K562CPEB4
CCNHENSG00000134480.91362.701001924.17680-0.497806.584405.37040K562CPSF6
CCNHENSG00000134480.9813.622801126.65780-0.469605.449903.88930K562CSTF2
CCNHENSG00000134480.92090.665702861.94500-0.453009.311908.20080K562DDX47
CCNHENSG00000134480.91317.732201759.02030-0.416705.868004.87900K562EIF2S2
CCNHENSG00000134480.9615.03460874.40110-0.507602.528701.57110K562EIF3A
CCNHENSG00000134480.9649.716201220.15500-0.9092010.032707.89990K562EIF3D
CCNHENSG00000134480.91036.610601258.35850-0.279702.680501.89570K562EIF3G
CCNHENSG00000134480.9758.224501320.99370-0.800909.979308.40420K562EIF4A3
CCNHENSG00000134480.92184.168603343.96830-0.6145015.2931013.18940K562EIF4G2
CCNHENSG00000134480.91259.821501957.83490-0.636008.011006.50980K562FMR1
CCNHENSG00000134480.91082.258101659.45500-0.616706.435704.98400K562FTO
CCNHENSG00000134480.91161.397801373.78640-0.242301.945501.42050K562FXR1
CCNHENSG00000134480.92036.469101529.650600.412802.376701.72850K562G3BP2
CCNHENSG00000134480.91074.211801837.10270-0.7742012.4830010.77890K562GPKOW
CCNHENSG00000134480.91909.600802344.25110-0.295902.464401.74890K562GRSF1
CCNHENSG00000134480.91225.366001798.30580-0.553407.781006.06310K562HNRNPA1
CCNHENSG00000134480.9499.201301831.66320-1.8755062.3144059.65760K562HNRNPC
CCNHENSG00000134480.91013.470701635.67810-0.6906010.052507.84260K562HNRNPF
CCNHENSG00000134480.92124.086702586.48940-0.284202.572601.55560K562HNRNPL
CCNHENSG00000134480.91153.528101777.52320-0.623809.084707.50890K562MAGOH
CCNHENSG00000134480.91316.391801793.22260-0.446004.867703.68640K562METAP2
CCNHENSG00000134480.91602.275002147.62110-0.4226010.455409.13310K562NSUN2
CCNHENSG00000134480.91693.541202902.80180-0.777406.040204.20550K562PABPC1
CCNHENSG00000134480.91354.983301958.31800-0.531302.244101.37120K562PABPN1
CCNHENSG00000134480.91035.494201260.76050-0.284002.199101.48580K562POLR2G
CCNHENSG00000134480.91152.198601642.27810-0.511305.876704.48180K562PSIP1
CCNHENSG00000134480.92177.929803648.50330-0.7443013.8763012.03940K562PUF60
CCNHENSG00000134480.93001.785203802.36690-0.341105.361804.00540K562PUM2
CCNHENSG00000134480.94042.278001985.411401.0256017.2745015.95940K562PUS1
CCNHENSG00000134480.92853.346801934.489100.5606011.084109.92020K562RBM15
CCNHENSG00000134480.91255.429801656.16350-0.399703.665302.68630K562RBM22
CCNHENSG00000134480.9926.710501498.36680-0.6932010.647608.69290K562RCC2
CCNHENSG00000134480.9827.407401129.56250-0.449102.785101.96600K562RPS19
CCNHENSG00000134480.9991.813201503.42380-0.600106.113204.55360K562RPS3
CCNHENSG00000134480.91841.317002752.21430-0.579903.616401.81790K562SBDS
CCNHENSG00000134480.91315.826902119.06200-0.6875015.9436014.11640K562SF3A3
CCNHENSG00000134480.9969.903001747.19600-0.8491010.429908.46090K562SF3B1
CCNHENSG00000134480.9923.677301590.92890-0.7844014.8334012.72920K562SF3B4
CCNHENSG00000134480.91110.348901420.41150-0.355302.942101.87470K562SRFBP1
CCNHENSG00000134480.91308.558101692.93300-0.371503.741402.92460K562SRSF1
CCNHENSG00000134480.91087.017801451.59870-0.417302.808001.74530K562SRSF4
CCNHENSG00000134480.9696.914901073.75610-0.623604.718503.36090K562SUPV3L1
CCNHENSG00000134480.91352.293701713.46080-0.341502.636601.94410K562TARDBP
CCNHENSG00000134480.91211.451901652.79960-0.448205.249204.06990K562TIA1
CCNHENSG00000134480.9994.195701579.59670-0.668007.348105.76860K562TIAL1
CCNHENSG00000134480.91050.155901678.11810-0.676209.384407.40610K562TRIM56
CCNHENSG00000134480.91742.222902230.70090-0.356602.724101.35530K562TRIP6
CCNHENSG00000134480.91494.713202277.16330-0.6074015.8905014.33470K562UPF1
CCNHENSG00000134480.91540.516102103.68300-0.449503.684602.28800K562UTP3
CCNHENSG00000134480.91522.347602026.16390-0.412508.153506.77310K562WDR43
CCNHENSG00000134480.92169.049702759.13070-0.347203.606602.12190K562WRN
CCNHENSG00000134480.92133.840902623.29470-0.297902.588501.75940K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCNH is not available on ENCORE database.





13 RBPs can affect the splicing of CCNH :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCNHENSG00000134480.9chr5-866902218669030186687310866887218669086086690921-0.463000.000000.00000excludedK562SF3B4
SECCNHENSG00000134480.9chr5-8669018486690301866885238668872186690860866909350.164000.000070.00365includedK562AKAP8L
SECCNHENSG00000134480.9chr5-8669022186690301866873108668872186690860866909350.133000.001080.09813includedK562FMR1
SECCNHENSG00000134480.9chr5-866902218669030186687310866887218669086086690921-0.434000.001190.09779excludedHepG2DDX59
SECCNHENSG00000134480.9chr5-866902218669030186687310866887218669086086690969-0.240000.000000.00000excludedK562AQR
SECCNHENSG00000134480.9chr5-867006608670082486697518866975898670379286704003-0.078000.000000.00001excludedK562AQR
SECCNHENSG00000134480.9chr5-8669027786690301866885238668872186690860866909210.106000.008250.09065includedK562PUS1
SECCNHENSG00000134480.9chr5-8668900686689120866885238668872186690860866909210.127000.001340.07897includedK562HNRNPL
SECCNHENSG00000134480.9chr5-8669022186690301866873108668872186690860866909210.091000.005450.09398includedHepG2SRSF1
SECCNHENSG00000134480.9chr5-8669022186690301866873108668872186690860866909350.136000.002950.06164includedK562RBM15
SECCNHENSG00000134480.9chr5-8669022186690301866873108668872186690860866909210.149000.002610.05748includedK562AGGF1
SECCNHENSG00000134480.9chr5-866901848669030186688523866887218669086086690921-0.099000.000480.02276excludedK562SF3B1
SECCNHENSG00000134480.9chr5-866902218669030186687310866887218669086086690921-0.256000.000000.00000excludedK562HNRNPK
SECCNHENSG00000134480.9chr5-866901848669030186688523866887218669086086690921-0.409000.000000.00000excludedK562HNRNPC
A3SSCCNHENSG00000134480.9chr5-8670385486704065867038548670400386704904867049460.603000.006430.03603longerK562AQR
A3SSCCNHENSG00000134480.9chr5-8669751886697613866975188669758986700660867008550.098000.000000.00000longerK562AQR
A3SSCCNHENSG00000134480.9chr5-866908608669096986690860866909358669521086695422-0.763000.016810.08235shorterK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCNH is not avaliable on ENCORE database.