C6orf62

General Information

Gene Name       : C6orf62
Gene ID             : ENSG00000112308.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C6orf62)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C6orf62ENSG00000112308.12101.5885.1493.36ENCSR000AEF
HepG2C6orf62ENSG00000112308.1245.9962.0154.00ENCSR985KAT
K562C6orf62ENSG00000112308.1262.3174.7768.54ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C6orf62 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C6orf62 RNA is bound by 36 proteins.  







eCLIP assay for C6orf62 is not avaliable on ENCORE database.





36 proteins are bound to C6orf62 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr62470514724705188-3'-UTR,intron-Distal4.010924.30850K562ZC3H11A
chr62470521324705298-3'-UTR,intron-Distal3.501965.63333K562ZC3H11A
chr62470620324706296-3'-UTR,intron-Distal,intron-Proximal3.8484513.17602K562IGF2BP1
chr62470510024705147-3'-UTR,intron-Distal5.2822412.17370K562PABPC4
chr62470522224705289-3'-UTR,intron-Distal3.919305.33371HepG2DDX55
chr62470515524705194-3'-UTR,intron-Distal4.190547.35577K562PUM2
chr62470584924705925-3'-UTR,intron-Distal4.048017.19958K562IGF2BP1
chr62472097124721021-5'-UTR,intron-Distal4.9711922.08593K562DDX3X
chr62471916224719173-5'-UTR,intron-Distal3.227924.01896K562TIA1
chr62471954124719591-5'-UTR,intron-Distal3.0638412.50802K562FAM120A
chr62472087624720930-5'-UTR,intron-Distal4.234317.03491K562RBM15
chr62472000824720045-5'-UTR,intron-Distal3.3016711.46725K562UPF1
chr62472092724720947-5'-UTR,intron-Distal3.934427.49943HepG2DDX3X
chr62471911324719184-5'-UTR,intron-Distal3.5781614.20334K562PCBP1
chr62471983824719889-5'-UTR,intron-Distal3.4681722.11881K562FAM120A
chr62472007324720115-5'-UTR,CDS,intron-Distal3.3657519.13440K562FAM120A
chr62471959424719647-5'-UTR,intron-Distal3.4491316.94455HepG2PCBP2
chr62472033924720366-5'-UTR,intron-Distal4.379805.76537HepG2PCBP2
chr62472061224720658-5'-UTR,intron-Distal,intron-Proximal3.3620021.94661HepG2DDX3X
chr62472097524721022-5'-UTR,intron-Distal3.251595.95627K562RBM15
chr62472097624721051-5'-UTR,intron-Distal3.7984122.20900HepG2DDX3X
chr62471652124716552-5'-UTR,CDS,intron-Distal3.743216.70085HepG2PPIG
chr62472076824720821-5'-UTR,intron-Distal3.7870623.51995HepG2PCBP2
chr62472041424720440-5'-UTR,intron-Distal3.4880411.70999HepG2DDX3X
chr62472087224720957-5'-UTR,intron-Distal3.782343.06243HepG2SRSF7
chr62471995624720002-5'-UTR,intron-Distal3.5032728.21622K562FAM120A
chr62471934024719390-5'-UTR,intron-Distal4.4626211.52306K562HNRNPC
chr62471911424719178-5'-UTR,intron-Distal5.034196.51368HepG2TIA1
chr62471928424719340-5'-UTR,intron-Distal3.532285.09471K562HNRNPC
chr62471911424719165-5'-UTR,intron-Distal4.6734942.18932HepG2PCBP2
chr62472032224720376-5'-UTR,intron-Distal,intron-Proximal3.100454.12441HepG2HNRNPK
chr62471999624720059-5'-UTR,intron-Distal3.2055512.65665HepG2QKI
chr62472102224721054-5'-UTR,intron-Distal3.506993.34231K562RBM15
chr62472011524720150-5'-UTR,CDS,intron-Distal3.1292814.78542K562FAM120A
chr62471908824719162-5'-UTR,intron-Distal3.6905123.37320K562TIA1
chr62471911124719170-5'-UTR,intron-Distal3.9121459.87563K562PTBP1
chr62471648724716522-5'-UTR,CDS,intron-Distal5.1420312.89578HepG2BCLAF1
chr62472000524720054-5'-UTR,intron-Distal4.3460636.04472HepG2GRSF1
chr62472034824720414-5'-UTR,intron-Distal3.576718.44674HepG2U2AF1
chr62472031524720418-5'-UTR,intron-Distal,intron-Proximal5.7691213.18076K562HNRNPK
chr62471995924720005-5'-UTR,intron-Distal5.0625434.23734HepG2GRSF1
chr62471934524719386-5'-UTR,intron-Distal3.1386518.70248K562FAM120A
chr62472102124721055-5'-UTR,intron-Distal4.6057913.41210K562DDX3X
chr62472097224721061-5'-UTR,intron-Distal3.298687.89739HepG2NCBP2
chr62471988724719932-5'-UTR,intron-Distal3.4929013.98565K562UPF1
chr62472086424720956-5'-UTR,intron-Distal4.0293539.16430K562DDX3X
chr62472000224720057-5'-UTR,intron-Distal3.0943225.68453K562FAM120A
chr62471955424719606-5'-UTR,intron-Distal3.5354515.89073K562PTBP1
chr62472097124721056-5'-UTR,intron-Distal3.586734.40704K562EIF3G
chr62472008324720089-5'-UTR,CDS,intron-Distal4.495474.02776HepG2FAM120A
chr62472015024720208-5'-UTR,intron-Distal3.5156324.43467K562FAM120A
chr62470637824706457-CDS,intron-Distal3.6987010.06315HepG2IGF2BP1
chr62470639424706465-CDS,intron-Distal3.225746.59563HepG2IGF2BP3
chr62471636924716417-CDS,intron-Distal,intron-Proximal3.5601312.67896HepG2BCLAF1
chr62470896624709025-CDS,intron-Distal,intron-Proximal4.944327.87148HepG2PRPF8
chr62471626324716378-CDS,intron-Distal,intron-Proximal3.9945112.16228K562AQR
chr62471451724714581-CDS,intron-Distal,intron-Proximal3.736876.19755K562GPKOW
chr62471452724714584-CDS,intron-Distal,intron-Proximal6.302236.69228HepG2PRPF8
chr62471876524718848-CDS,intron-Distal3.356359.71090HepG2PPIG
chr62471637424716385-CDS,intron-Distal,intron-Proximal3.582255.90680HepG2PPIG
chr62471638224716505-CDS,intron-Distal3.904455.91846K562GRWD1
chr62471453524714614-CDS,intron-Distal,intron-Proximal3.508887.51172HepG2PPIG
chr62471876624718806-CDS,intron-Distal3.168339.12012HepG2BCLAF1
chr62470905024709057-CDS,intron-Distal3.745579.92538K562YBX3
chr62471638524716430-CDS,intron-Distal3.3830710.17919HepG2PPIG
chr62471632524716402-CDS,intron-Distal,intron-Proximal4.0941710.82117K562GPKOW
chr62471452724714606-CDS,intron-Distal,intron-Proximal3.373186.26867K562SRSF1
chr62470647624706490-CDS,intron-Distal3.175083.29348K562YBX3
chr62471452124714605-CDS,intron-Distal,intron-Proximal3.225098.90025HepG2BCLAF1
chr62471641724716487-CDS,intron-Distal4.0469719.82091HepG2BCLAF1
chr62471454424714567-CDS,intron-Distal,intron-Proximal3.743863.05875K562RBM15
chr62470900424709019-CDS,intron-Distal,intron-Proximal3.690639.89088K562YBX3
chr62470901924709034-CDS,intron-Distal3.9067811.82099K562YBX3
chr62471287024712922-intron-Distal3.259475.97391HepG2HNRNPC
chr62471238324712445-intron-Distal3.603234.98883HepG2HNRNPC
chr62471362524713689-intron-Distal3.230059.79773K562KHSRP
chr62471011724710162-intron-Distal3.827013.20552HepG2KHSRP
chr62470821724708240-intron-Distal3.165643.40404HepG2ILF3
chr62471866824718760-intron-Distal4.342336.48405K562AQR
chr62471327824713367-intron-Distal4.0603910.57270K562ILF3
chr62470652224706593-intron-Distal3.338824.35650K562KHSRP
chr62470819524708217-intron-Distal3.139413.40404HepG2ILF3
chr62470659324706661-intron-Distal3.871546.89837K562KHSRP
chr62471067324710736-intron-Distal3.229353.02632HepG2ILF3
chr62471327624713353-intron-Distal4.272477.46127HepG2ILF3
chr62471142324711522-intron-Distal4.4586521.70818K562TARDBP
chr62471005424710107-intron-Distal4.190568.64614K562CSTF2T
chr62471657924716683-intron-Distal,intron-Proximal3.815686.59336K562KHSRP
chr62471074824710829-intron-Distal4.213523.25055K562U2AF2
chr62471862524718691-intron-Distal3.117684.56635K562KHSRP
chr62471005124710104-intron-Distal4.270314.08455HepG2CSTF2
chr62471018224710241-intron-Distal3.319453.53952HepG2KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C6orf62 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C6orf62 is not available on ENCORE database.

  • 97 RBPs can affect the levels of C6orf62.  








The Knockdown/knockout RNA-Seq assay for C6orf62 is not available on ENCORE database.





97 RBPs can affect the gene expression of C6orf62 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C6orf62ENSG00000112308.82751.262002084.678100.400204.132002.84920HepG2AATF
C6orf62ENSG00000112308.82774.069603103.88570-0.162101.935301.40980HepG2ACO1
C6orf62ENSG00000112308.83756.224803118.514500.268304.094503.17470HepG2AKAP8L
C6orf62ENSG00000112308.82859.014702313.542100.305302.988701.71070HepG2BUD13
C6orf62ENSG00000112308.84909.990003710.535000.404003.939703.02640HepG2CIRBP
C6orf62ENSG00000112308.82059.127803395.42050-0.721605.446304.37030HepG2CNOT7
C6orf62ENSG00000112308.81238.776902214.86420-0.8383013.2286011.85050HepG2CPSF6
C6orf62ENSG00000112308.83444.637404019.80570-0.222803.160002.37610HepG2DAZAP1
C6orf62ENSG00000112308.83228.873002870.675000.169502.134501.39460HepG2DDX19B
C6orf62ENSG00000112308.83019.930702250.962600.423905.427204.14200HepG2DDX24
C6orf62ENSG00000112308.83329.695502626.263000.342302.703601.42890HepG2DDX27
C6orf62ENSG00000112308.85433.097603883.782200.484204.320603.56340HepG2DDX6
C6orf62ENSG00000112308.83849.526802969.591800.374305.019804.15650HepG2DKC1
C6orf62ENSG00000112308.82089.299702426.72200-0.216003.172602.48240HepG2DNAJC2
C6orf62ENSG00000112308.81470.310402045.02320-0.476004.481903.33620HepG2EEF2
C6orf62ENSG00000112308.83024.618402118.294800.513703.973902.63350HepG2AGO1
C6orf62ENSG00000112308.84669.875403734.009000.322602.515901.94980HepG2EIF2S1
C6orf62ENSG00000112308.82474.363501660.132600.575706.718605.35850HepG2EIF3D
C6orf62ENSG00000112308.85107.338704126.729200.307502.077001.52060HepG2EIF4A3
C6orf62ENSG00000112308.86421.184504017.548500.676406.312305.30370HepG2EIF4B
C6orf62ENSG00000112308.86600.847403965.863300.7349029.2196027.13180HepG2EIF4G1
C6orf62ENSG00000112308.82318.508603799.02920-0.7124011.402109.81860HepG2EIF4G2
C6orf62ENSG00000112308.85373.415504748.607800.178202.529001.95020HepG2ETF1
C6orf62ENSG00000112308.83431.403404163.06020-0.278801.953201.36760HepG2FXR1
C6orf62ENSG00000112308.8859.698801478.14240-0.7819010.184208.53460HepG2GEMIN5
C6orf62ENSG00000112308.82356.394003143.13410-0.415602.393001.35590HepG2GRSF1
C6orf62ENSG00000112308.83324.051102471.936900.427203.703102.97120HepG2HNRNPA1
C6orf62ENSG00000112308.82067.978502731.35200-0.401408.005607.01500HepG2HNRNPU
C6orf62ENSG00000112308.83711.505602641.256200.490707.759206.60260HepG2IGF2BP1
C6orf62ENSG00000112308.85742.233803925.944400.548506.618105.61510HepG2IGF2BP2
C6orf62ENSG00000112308.85056.246003575.258000.499903.977502.97790HepG2LARP4
C6orf62ENSG00000112308.83081.605704187.92260-0.442603.702202.98270HepG2MATR3
C6orf62ENSG00000112308.82553.227302124.540200.265101.962101.32740HepG2NSUN2
C6orf62ENSG00000112308.84799.072103103.352400.628803.898202.83120HepG2PABPC1
C6orf62ENSG00000112308.83978.132602846.824400.482603.031601.94500HepG2PCBP2
C6orf62ENSG00000112308.81588.943202992.62710-0.913308.759006.70120HepG2PRPF6
C6orf62ENSG00000112308.84463.246903707.582400.267504.166003.52490HepG2PTBP1
C6orf62ENSG00000112308.83048.009604039.25270-0.4062012.2076011.14870HepG2PUM1
C6orf62ENSG00000112308.83827.903003161.517000.275805.039704.25310HepG2PUS1
C6orf62ENSG00000112308.83065.523204015.53170-0.389506.225305.34050HepG2QKI
C6orf62ENSG00000112308.81953.255902746.96110-0.492002.440201.77500HepG2RAVER1
C6orf62ENSG00000112308.84186.178303125.145500.421606.200104.97960HepG2RBM15
C6orf62ENSG00000112308.82771.717803968.96980-0.5180011.3770010.47870HepG2RBM22
C6orf62ENSG00000112308.85310.416303644.304600.543109.159207.98770HepG2RBM25
C6orf62ENSG00000112308.83382.170003842.93480-0.184302.345701.77190HepG2RECQL
C6orf62ENSG00000112308.83757.693202889.482300.378903.814003.03250HepG2RPLP0
C6orf62ENSG00000112308.82903.982502142.507600.438604.225403.27630HepG2RRP9
C6orf62ENSG00000112308.81551.066002432.41680-0.6491019.9127018.40770HepG2SAFB2
C6orf62ENSG00000112308.82294.630101621.300500.501005.392404.08910HepG2SERBP1
C6orf62ENSG00000112308.83097.499902371.723300.385103.879703.05620HepG2SF3B1
C6orf62ENSG00000112308.83151.427003648.50520-0.211303.362002.60110HepG2SLBP
C6orf62ENSG00000112308.82439.643302836.65480-0.217503.602802.88520HepG2SMN1
C6orf62ENSG00000112308.81286.317102802.41840-1.1234014.5925012.35190HepG2SMNDC1
C6orf62ENSG00000112308.87698.405904482.827300.7801042.4363041.08470HepG2SRFBP1
C6orf62ENSG00000112308.83420.267404029.14800-0.236403.892603.35540HepG2SRSF1
C6orf62ENSG00000112308.82886.487903277.88850-0.183502.411401.88910HepG2SRSF9
C6orf62ENSG00000112308.85120.560903892.193800.395609.886109.03190HepG2SSB
C6orf62ENSG00000112308.82709.811902105.521900.363904.043902.91810HepG2SUPT6H
C6orf62ENSG00000112308.84822.093802793.967400.7872012.1295010.88210HepG2SUPV3L1
C6orf62ENSG00000112308.82989.282703621.43300-0.276803.734203.09930HepG2TAF15
C6orf62ENSG00000112308.81497.940602335.22140-0.640608.664107.48110HepG2TARDBP
C6orf62ENSG00000112308.83343.827402654.191200.333104.091203.50860HepG2TIAL1
C6orf62ENSG00000112308.82303.279802677.73270-0.217302.736202.17380HepG2TRIM56
C6orf62ENSG00000112308.82973.544203717.41580-0.322103.508702.51310HepG2TUFM
C6orf62ENSG00000112308.85785.749602667.227601.1171027.4826025.44010HepG2U2AF1
C6orf62ENSG00000112308.82193.267102790.77140-0.347606.545205.54590HepG2UPF1
C6orf62ENSG00000112308.83425.698302559.106900.420703.264902.17130HepG2UPF2
C6orf62ENSG00000112308.82204.467302868.54600-0.379906.509004.97550HepG2UTP18
C6orf62ENSG00000112308.81571.290702694.38490-0.7780025.9401024.38860HepG2UTP3
C6orf62ENSG00000112308.84561.538502297.144600.9896059.8365057.59190HepG2ZC3H8
C6orf62ENSG00000112308.84414.451103069.318700.5242020.2957019.15130HepG2ZNF622
C6orf62ENSG00000112308.82981.928903661.92890-0.296404.706704.00070K562AGGF1
C6orf62ENSG00000112308.84826.232104024.009900.262202.388101.48540K562AKAP8
C6orf62ENSG00000112308.810659.912006081.452800.8096017.0425015.74820K562AQR
C6orf62ENSG00000112308.84403.132703552.937100.309402.560301.72220K562BOP1
C6orf62ENSG00000112308.82751.689403777.64890-0.457206.816605.57760K562CPSF6
C6orf62ENSG00000112308.83553.413104172.75560-0.231803.207901.89650K562DDX21
C6orf62ENSG00000112308.84263.334905192.23760-0.284403.084502.40110K562DDX47
C6orf62ENSG00000112308.82244.276203465.64430-0.626904.623702.92800K562EEF2
C6orf62ENSG00000112308.83679.552703101.837200.246303.305601.97160K562EIF2S1
C6orf62ENSG00000112308.82938.194603565.92230-0.279303.384802.51070K562EIF3G
C6orf62ENSG00000112308.84615.904702950.371700.6456010.632909.00250K562EIF4A3
C6orf62ENSG00000112308.83791.279802656.927900.5128010.023707.70880K562EIF4B
C6orf62ENSG00000112308.84788.681703843.944200.316902.808101.94810K562FMR1
C6orf62ENSG00000112308.85037.660903068.254900.7152022.8190021.19970K562FXR1
C6orf62ENSG00000112308.84596.154903102.552400.566904.828503.83430K562G3BP2
C6orf62ENSG00000112308.82036.078003357.40110-0.721607.024704.76030K562GEMIN5
C6orf62ENSG00000112308.84244.528103610.012600.233502.659901.54010K562GLRX3
C6orf62ENSG00000112308.84431.167503606.611000.296902.795101.99670K562GPKOW
C6orf62ENSG00000112308.83640.437502509.507500.536608.618407.61680K562HNRNPC
C6orf62ENSG00000112308.86570.157004375.423400.586407.595105.46060K562HNRNPK
C6orf62ENSG00000112308.83813.205904392.31030-0.204002.157201.36880K562HNRNPU
C6orf62ENSG00000112308.84353.293803079.895000.499103.941702.81170K562KRR1
C6orf62ENSG00000112308.83331.916102429.490100.455605.662603.57090K562LARP7
C6orf62ENSG00000112308.85477.693504603.897300.250602.310101.53820K562MAGOH
C6orf62ENSG00000112308.88645.242107249.866800.253902.508401.43490K562MSI2
C6orf62ENSG00000112308.84182.229702946.183200.505308.760206.61200K562NCBP2
C6orf62ENSG00000112308.86140.821704000.249700.618204.207502.65690K562PABPC1
C6orf62ENSG00000112308.85041.583104096.466300.299402.885001.88620K562PCBP2
C6orf62ENSG00000112308.82037.902203348.61590-0.716504.199101.93140K562PRPF6
C6orf62ENSG00000112308.85555.040704472.918200.312503.614302.86720K562PTBP1
C6orf62ENSG00000112308.811067.582307421.057700.576506.161904.94640K562PUF60
C6orf62ENSG00000112308.82962.114003778.71760-0.351303.454602.85800K562PUS1
C6orf62ENSG00000112308.83054.268003681.94180-0.269602.438901.87580K562RBM15
C6orf62ENSG00000112308.83741.163702944.795000.345204.092002.42670K562RBM25
C6orf62ENSG00000112308.82325.302703319.93740-0.513703.388302.48170K562RPS19
C6orf62ENSG00000112308.84805.442104161.132200.207602.443001.67380K562SF3A3
C6orf62ENSG00000112308.84126.874003228.010800.354304.867603.71870K562SF3B4
C6orf62ENSG00000112308.83739.329504263.15750-0.189103.010202.04070K562SRPK2
C6orf62ENSG00000112308.83056.312003723.93680-0.285004.245802.77680K562SRSF7
C6orf62ENSG00000112308.85080.803703156.068600.686809.253107.33110K562SUPV3L1
C6orf62ENSG00000112308.84105.688503235.713300.343403.570301.75090K562TBRG4
C6orf62ENSG00000112308.86530.390803009.520501.1175018.2376015.28330K562U2AF1
C6orf62ENSG00000112308.85176.049303107.479900.7360018.4589016.33130K562U2AF2
C6orf62ENSG00000112308.86517.722804471.544600.5435018.0440016.38530K562UPF1
C6orf62ENSG00000112308.86466.951504650.807100.475504.432202.90370K562UTP3
C6orf62ENSG00000112308.88509.777306851.213500.312703.143402.21680K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C6orf62 is not available on ENCORE database.





6 RBPs can affect the splicing of C6orf62 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC6orf62ENSG00000112308.8chr6-247187672471892124716375247165522472008724720226-0.072000.000030.01128excludedK562PCBP1
SEC6orf62ENSG00000112308.8chr6-2471872424718842247164732471655224720087247202260.212000.012790.09862includedK562AQR
SEC6orf62ENSG00000112308.8chr6-247187672471892124716375247165522472008724720226-0.081000.000100.00327excludedK562U2AF1
SEC6orf62ENSG00000112308.8chr6-247187672471884224716375247165522472008724720226-0.087000.000010.00455excludedK562RBM22
SEC6orf62ENSG00000112308.8chr6-247187672471883724716375247165522472008724720226-0.065000.000010.00052excludedK562HNRNPU
SEC6orf62ENSG00000112308.8chr6-247187672471892124716375247165522472008724720226-0.060000.000130.00932excludedK562HNRNPK
A3SSC6orf62ENSG00000112308.8chr6-2470900424709215247090042470913924714545247147480.089000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C6orf62 is not avaliable on ENCORE database.