ATP5D

General Information

Gene Name       : ATP5D
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ATP5D)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATP5D is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATP5D RNA is bound by 20 proteins.  







eCLIP assay for ATP5D is not avaliable on ENCORE database.





20 proteins are bound to ATP5D RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1912444371244485+3'-UTR,intron-Proximal4.1661810.58560K562AQR
chr1912443981244486+3'-UTR,CDS,intron-Proximal4.4297112.80402HepG2LARP4
chr1912445821244669+3'-UTR,intron-Distal,intron-Proximal4.060013.70195HepG2UPF1
chr1912446531244689+3'-UTR,intron-Proximal3.9291611.68628K562YBX3
chr1912444351244457+3'-UTR,intron-Proximal3.427265.40420HepG2AQR
chr1912444851244525+3'-UTR,intron-Proximal4.172064.49024K562AQR
chr1912447311244789+3'-UTR,intron-Proximal4.384267.45053HepG2LARP4
chr1912443401244438+3'-UTR,CDS5.5447364.26279K562PABPC4
chr1912447051244729+3'-UTR,intron-Proximal3.220618.40639K562YBX3
chr1912444571244484+3'-UTR,intron-Proximal3.659536.28932HepG2AQR
chr1912447021244754+3'-UTR,intron-Proximal3.097763.44337K562METAP2
chr1912444401244493+3'-UTR,intron-Proximal3.777776.46344HepG2PRPF8
chr1912417771241891+5'-UTR,CDS3.7857328.59091K562DDX55
chr1912418161241901+5'-UTR,CDS3.5149821.69031HepG2DDX3X
chr1912417781241816+5'-UTR3.593914.38588HepG2DDX3X
chr1912417791241923+5'-UTR,CDS4.4440787.15340K562PABPC4
chr1912417751241886+5'-UTR,CDS3.8671021.26377K562DDX3X
chr1912417711241917+5'-UTR,CDS5.9179128.73677K562SERBP1
chr1912426041242624+CDS,intron-Proximal4.778569.56266K562AQR
chr1912419621241989+CDS6.3997711.10821K562PCBP1
chr1912441001244137+CDS3.3878313.71211K562YBX3
chr1912419891242030+CDS,intron-Proximal5.039796.38747HepG2AQR
chr1912426061242649+CDS,intron-Proximal5.024996.03362HepG2AQR
chr1912441371244158+CDS3.5787610.12367K562YBX3
chr1912441621244184+CDS3.071076.67252HepG2LARP4
chr1912441651244187+CDS,intron-Proximal3.335096.14855HepG2PABPN1
chr1912443751244428+CDS3.627125.86107HepG2PPIG
chr1912440801244146+CDS,intron-Proximal3.117773.65461K562BUD13
chr1912443161244325+CDS5.5281714.93866K562PABPC4
chr1912443211244413+CDS3.289125.80774HepG2DDX55
chr1912440001244110+CDS,intron-Proximal3.881015.93727K562SF3B4
chr1912441411244165+CDS4.153344.25576HepG2PABPN1
chr1912419231241987+CDS3.688518.74470K562PABPC4
chr1912424611242595+CDS3.7824314.66573HepG2RPS3
chr1912425761242597+CDS3.624458.16221HepG2PRPF8
chr1912443131244381+CDS,intron-Proximal4.206358.51824HepG2RPS3
chr1912443251244340+CDS5.6041711.52455K562PABPC4
chr1912419821242032+CDS,intron-Proximal3.100114.63846HepG2PRPF8
chr1912419851242004+CDS,intron-Proximal3.162636.62672K562AQR
chr1912418861241960+CDS4.0691517.85655K562DDX3X
chr1912441341244183+CDS3.240414.01563K562LIN28B
chr1912424541242531+CDS,intron-Proximal5.0157613.59352K562PCBP1
chr1912419041241962+CDS3.2702612.90015K562PCBP1
chr1912443121244350+CDS,intron-Proximal3.250409.56070HepG2LARP4
chr1912441741244218+CDS,intron-Proximal3.450553.98203HepG2PRPF8
chr1912425971242634+CDS,intron-Proximal4.3543919.21824HepG2PRPF8
chr1912441491244184+CDS5.6596915.80160K562PABPC4
chr1912441051244185+CDS,intron-Proximal3.2575710.58433HepG2PPIG
chr1912419661241990+CDS3.396403.59926K562DDX3X
chr1912418871241947+CDS4.0499110.20165HepG2LARP4
chr1912443121244380+CDS,intron-Proximal3.270845.99353HepG2PABPN1
chr1912443131244316+CDS,intron-Proximal6.3409714.70844K562PABPC4
chr1912419781242027+CDS,intron-Proximal3.112113.44847HepG2PABPN1
chr1912423081242374+intron-Distal,intron-Proximal3.409843.12941K562UCHL5
chr1912422621242330+intron-Distal4.280863.28989K562RBM15
chr1912438931243940+intron-Distal3.123453.01994K562BUD13
chr1912423141242378+intron-Distal,intron-Proximal3.475664.06531HepG2GRWD1
chr1912423431242451+intron-Distal,intron-Proximal3.007523.29847HepG2AQR
chr1912423301242421+intron-Distal,intron-Proximal5.086348.98006K562RBM15
chr1912440031244080+intron-Proximal4.333524.24670HepG2SF3B4
chr1912426341242661+intron-Proximal4.4264211.13470HepG2PRPF8
chr1912426241242654+intron-Proximal3.961419.10472K562AQR
chr1912420041242034+intron-Proximal3.483407.17950K562AQR
chr1912423891242440+intron-Proximal3.840034.42776HepG2BUD13
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATP5D is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATP5D is not available on ENCORE database.

  • 105 RBPs can affect the levels of ATP5D.  








The Knockdown/knockout RNA-Seq assay for ATP5D is not available on ENCORE database.





105 RBPs can affect the gene expression of ATP5D :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATP5DENSG00000099624.3793.50230641.351800.307002.812002.20030HepG2ACO1
ATP5DENSG00000099624.3428.26080191.284601.162703.534302.47720HepG2BCCIP
ATP5DENSG00000099624.3175.74330305.12890-0.795903.144802.32690HepG2CALR
ATP5DENSG00000099624.3452.46690641.10350-0.502705.702704.81030HepG2CKAP4
ATP5DENSG00000099624.3241.93110107.724201.167203.614602.73500HepG2CNOT7
ATP5DENSG00000099624.3754.73620544.559000.470802.723301.62610HepG2CPSF7
ATP5DENSG00000099624.3204.0018099.727601.032403.455702.31710HepG2YBX3
ATP5DENSG00000099624.3350.39780207.183100.758005.299204.46250HepG2CELF1
ATP5DENSG00000099624.3347.77800222.821200.642204.928803.98010HepG2DAZAP1
ATP5DENSG00000099624.3236.7664097.918801.273703.537202.74860HepG2DNAJC21
ATP5DENSG00000099624.3309.5622097.063301.6731023.0842021.36630HepG2DNAJC2
ATP5DENSG00000099624.3428.56590210.547501.025309.158807.71370HepG2EIF4G2
ATP5DENSG00000099624.3267.85270175.274700.611702.778801.60820HepG2FAM120A
ATP5DENSG00000099624.3349.57940667.90560-0.934007.977406.74700HepG2FIP1L1
ATP5DENSG00000099624.3305.53990621.73600-1.0249012.8232011.18790HepG2FUBP3
ATP5DENSG00000099624.3225.7893091.375401.305004.750502.91520HepG2HNRNPA0
ATP5DENSG00000099624.3353.01250255.894800.464102.774102.05620HepG2HNRNPF
ATP5DENSG00000099624.3492.60420202.987801.2789021.0510019.36310HepG2HNRNPL
ATP5DENSG00000099624.3206.59970109.235900.919302.677602.08120HepG2HNRNPU
ATP5DENSG00000099624.3219.86780111.580400.978506.576905.49390HepG2ILF2
ATP5DENSG00000099624.3239.43020102.931201.217803.970702.49290HepG2KHDRBS1
ATP5DENSG00000099624.3297.78980152.540100.965003.640102.24450HepG2LIN28B
ATP5DENSG00000099624.31127.87650504.327501.161103.445702.74820HepG2MATR3
ATP5DENSG00000099624.3337.03570453.80390-0.429202.732401.52290HepG2NAA15
ATP5DENSG00000099624.3268.97380131.462301.032703.699002.05000HepG2NIP7
ATP5DENSG00000099624.3373.87620220.946500.758804.973703.95550HepG2NOL12
ATP5DENSG00000099624.3293.54030114.981401.352107.414905.06780HepG2NOLC1
ATP5DENSG00000099624.3229.6026098.549301.220102.703101.82630HepG2PABPC1
ATP5DENSG00000099624.3578.72770422.245000.454704.289603.56300HepG2PCBP1
ATP5DENSG00000099624.3334.3041097.429201.7786024.1272022.12450HepG2PPIL4
ATP5DENSG00000099624.3341.71560210.899300.696104.339803.61270HepG2PUF60
ATP5DENSG00000099624.3580.91150223.863101.3756027.7317026.24470HepG2PUM1
ATP5DENSG00000099624.3461.30690635.63040-0.462503.895503.30840HepG2RBM22
ATP5DENSG00000099624.3397.47260175.367101.180402.379101.46800HepG2RBM27
ATP5DENSG00000099624.3432.94800142.407601.6041012.4294010.24040HepG2RCC2
ATP5DENSG00000099624.3169.00910275.69470-0.706003.896603.10880HepG2RPLP0
ATP5DENSG00000099624.3303.79600161.703200.909703.163802.30750HepG2RPS2
ATP5DENSG00000099624.3270.36060108.445301.317803.354002.47450HepG2RPS3A
ATP5DENSG00000099624.3293.03230165.098000.827602.437401.43180HepG2RPS5
ATP5DENSG00000099624.3422.5162097.277702.1187039.4988037.49860HepG2SAFB2
ATP5DENSG00000099624.3258.48160102.112501.339805.020603.25640HepG2SART3
ATP5DENSG00000099624.3582.35000202.187101.5261031.5763029.72220HepG2SLBP
ATP5DENSG00000099624.3283.49730113.439201.3213013.8003012.53380HepG2SMN1
ATP5DENSG00000099624.3238.99170138.325400.788802.810801.84630HepG2SMNDC1
ATP5DENSG00000099624.3266.24270132.011101.012005.093102.87120HepG2SND1
ATP5DENSG00000099624.3237.19420402.82170-0.764102.016701.35390HepG2SNRNP70
ATP5DENSG00000099624.3499.16150717.90190-0.524306.264905.59420HepG2SRFBP1
ATP5DENSG00000099624.3318.67920466.90420-0.551002.338201.89410HepG2SRSF1
ATP5DENSG00000099624.3633.68340208.213401.6056033.9968032.14890HepG2SRSF5
ATP5DENSG00000099624.3239.18040379.87880-0.667404.845304.15260HepG2SRSF9
ATP5DENSG00000099624.3214.6113094.429301.184303.394902.16290HepG2STIP1
ATP5DENSG00000099624.3516.30590236.812201.1244016.7227015.39950HepG2SUCLG1
ATP5DENSG00000099624.3116.51030419.76000-1.8491014.2893013.16140HepG2TAF15
ATP5DENSG00000099624.3195.68980106.131800.882604.810404.18830HepG2TIAL1
ATP5DENSG00000099624.3430.92110107.092702.0085020.8836019.51750HepG2TRIM56
ATP5DENSG00000099624.3559.90760206.013901.442302.555801.71900HepG2TUFM
ATP5DENSG00000099624.3365.14660571.24970-0.645605.023504.19060HepG2U2AF1
ATP5DENSG00000099624.3529.31260218.045501.2794011.189509.45540HepG2UBE2L3
ATP5DENSG00000099624.3287.2068097.150001.563706.773105.06210HepG2XPO5
ATP5DENSG00000099624.3407.78540184.283501.145804.616403.68890HepG2XRN2
ATP5DENSG00000099624.3267.07560135.202900.982004.821003.06220HepG2ZRANB2
ATP5DENSG00000099624.31806.392901217.240900.569407.789406.90550K562AGGF1
ATP5DENSG00000099624.32146.494401337.704300.682103.277102.18440K562AKAP8
ATP5DENSG00000099624.32083.483001266.628900.717903.905803.12770K562AKAP8L
ATP5DENSG00000099624.3880.087601413.12250-0.683207.310906.43050K562AQR
ATP5DENSG00000099624.31971.747501329.063900.569004.678903.45550K562ATP5C1
ATP5DENSG00000099624.3723.56050407.148500.829503.973102.80670K562BCLAF1
ATP5DENSG00000099624.3270.36000439.85380-0.702104.813603.65160K562BOP1
ATP5DENSG00000099624.3865.96590485.209400.8356010.298807.87880K562CCAR1
ATP5DENSG00000099624.3419.18250296.770800.498102.556501.32650K562CIRBP
ATP5DENSG00000099624.31158.415901803.50080-0.638602.943401.93900K562CELF1
ATP5DENSG00000099624.3996.53750834.070100.256701.965101.34050K562EIF2S2
ATP5DENSG00000099624.3231.23200475.87150-1.0412010.263508.56220K562FMR1
ATP5DENSG00000099624.3673.73060929.69910-0.464605.426404.61840K562FXR1
ATP5DENSG00000099624.38.9131086.89300-3.2852013.4569011.64600K562G3BP2
ATP5DENSG00000099624.3904.553901331.10910-0.557403.045201.84880K562GLRX3
ATP5DENSG00000099624.3313.79410446.51590-0.508903.141102.29770K562GPKOW
ATP5DENSG00000099624.3108.20820276.49770-1.353505.878404.00560K562HNRNPK
ATP5DENSG00000099624.3726.06830277.129501.389402.431101.48740K562IGF2BP2
ATP5DENSG00000099624.3456.90840281.783500.697205.759803.93270K562IGF2BP3
ATP5DENSG00000099624.3337.94900969.37680-1.5203013.1007010.02330K562ILF2
ATP5DENSG00000099624.3184.21400381.28530-1.049504.046902.89930K562KRR1
ATP5DENSG00000099624.3600.52020291.017801.0450013.7571011.75670K562MAGOH
ATP5DENSG00000099624.31760.397301286.721900.452103.724302.41120K562MAK16
ATP5DENSG00000099624.3553.41300290.391800.930303.805302.70890K562MATR3
ATP5DENSG00000099624.32044.458001505.735700.441103.463302.42770K562MBNL1
ATP5DENSG00000099624.3908.029901399.51740-0.624106.610705.41010K562MTPAP
ATP5DENSG00000099624.3504.65720892.76290-0.823003.913902.43180K562NCBP2
ATP5DENSG00000099624.3599.62150295.062001.022902.942001.59370K562NONO
ATP5DENSG00000099624.3564.358701020.75350-0.855005.723203.93110K562PABPC1
ATP5DENSG00000099624.3467.37310737.40300-0.657903.161902.27210K562PCBP3
ATP5DENSG00000099624.3435.85590565.59170-0.375902.549201.78290K562POLR2G
ATP5DENSG00000099624.31100.68020663.761800.729603.271502.36600K562PPIG
ATP5DENSG00000099624.3630.08370282.759501.1559017.7717016.16090K562PTBP1
ATP5DENSG00000099624.3906.032401599.46000-0.820002.075201.36900K562PUF60
ATP5DENSG00000099624.31152.093701702.09350-0.563102.474701.46930K562PUM1
ATP5DENSG00000099624.31790.923601255.901200.511904.963704.26350K562PUS1
ATP5DENSG00000099624.31781.097601223.891300.541206.218005.35460K562RBM15
ATP5DENSG00000099624.3487.79360947.45110-0.957807.298304.63710K562RPS3A
ATP5DENSG00000099624.3380.48080263.614600.529302.399801.47500K562RPS3
ATP5DENSG00000099624.3865.430701534.46170-0.826208.623507.24140K562SF3A3
ATP5DENSG00000099624.3202.61240424.67530-1.067608.393206.63060K562SF3B1
ATP5DENSG00000099624.3173.7621090.377900.943005.304804.09700K562SF3B4
ATP5DENSG00000099624.379.54150166.53850-1.066103.401101.61190K562SND1
ATP5DENSG00000099624.31155.278201572.11160-0.444502.815801.87350K562SRPK2
ATP5DENSG00000099624.3630.79480277.224901.1860017.0608015.31680K562SRSF1
ATP5DENSG00000099624.3588.93440254.452401.2106014.6852012.11610K562SRSF4
ATP5DENSG00000099624.3591.92330261.883201.176406.398504.69170K562SRSF5
ATP5DENSG00000099624.3117.37770187.08280-0.672502.982301.64640K562SSB
ATP5DENSG00000099624.3568.30930767.05060-0.432602.953401.54410K562SSRP1
ATP5DENSG00000099624.3526.38500280.513000.908004.641103.71820K562TARDBP
ATP5DENSG00000099624.3761.03690270.601401.4917028.7926025.95310K562TIA1
ATP5DENSG00000099624.3573.21970265.674701.109307.058405.11180K562TRA2A
ATP5DENSG00000099624.31131.838701648.62420-0.542604.896203.97110K562UPF1
ATP5DENSG00000099624.3933.886601467.06510-0.651605.903904.71720K562WDR43
ATP5DENSG00000099624.3524.92290303.626700.789702.779401.57190K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATP5D is not available on ENCORE database.





17 RBPs can affect the splicing of ATP5D :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RIATP5DENSG00000099624.3chr19+1244313124482412443131244439124473512448240.186000.000050.00614includedK562PPIL4
RIATP5DENSG00000099624.3chr19+1244313124482412443131244439124473512448240.100000.000010.00190includedK562DROSHA
RIATP5DENSG00000099624.3chr19+1244313124482412443131244439124473512448240.100000.011740.09752includedHepG2SF3A3
RIATP5DENSG00000099624.3chr19+1244313124482412443131244439124473512448240.171000.000950.02468includedK562HNRNPC
RIATP5DENSG00000099624.3chr19+1244313124482412443131244439124473512448240.398000.000020.00024includedHepG2U2AF2
RIATP5DENSG00000099624.3chr19+1244313124482412443131244439124473512448240.172000.001730.03725includedK562SRSF1
RIATP5DENSG00000099624.3chr19+124431312448241244313124443912447351244824-0.099000.001910.07544excludedK562NCBP2
RIATP5DENSG00000099624.3chr19+1244313124482412443131244439124473512448240.075000.000420.02151includedK562HNRNPUL1
RIATP5DENSG00000099624.3chr19+1244313124482412443131244439124473512448240.152000.003090.03847includedHepG2PCBP1
RIATP5DENSG00000099624.3chr19+1244313124482412443131244439124473512448240.215000.001070.05099includedK562BUD13
RIATP5DENSG00000099624.3chr19+1244313124482412443131244439124473512448240.404000.000760.00950includedHepG2TAF15
RIATP5DENSG00000099624.3chr19+1244313124482412443131244439124473512448240.194000.000900.01064includedHepG2U2AF1
RIATP5DENSG00000099624.3chr19+124431312448241244313124443912447351244824-0.139000.008250.09541excludedHepG2G3BP1
RIATP5DENSG00000099624.3chr19+1244313124482412443131244439124473512448240.126000.000050.00625includedK562SBDS
RIATP5DENSG00000099624.3chr19+1244313124482412443131244439124473512448240.267000.000000.00013includedHepG2RBM22
RIATP5DENSG00000099624.3chr19+1244313124482412443131244439124473512448240.383000.000010.00032includedHepG2SRSF9
RIATP5DENSG00000099624.3chr19+1244313124482412443131244439124473512448240.213000.000000.00000includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ATP5D is not avaliable on ENCORE database.