YBX3

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	YBX3	ENSG00000060138.12	102.49	143.93	123.21	ENCSR000AEF
HepG2	YBX3	ENSG00000060138.12	118.67	110.18	114.43	ENCSR985KAT
K562	YBX3	ENSG00000060138.12	139.69	160.45	150.07	ENCSR000AEO

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
eCLIP	eCLIP: 551	ENCSR529FKI	YBX3	K562	Released	ENCAB021IRD	ENCSR660VTT
eCLIP	eCLIP: 729	ENCSR735HOK	YBX3	HepG2	Released	ENCAB021IRD	ENCSR700UGT
knockdown followed by RNA-seq	YBX3-BGKLV24-K562	ENCSR306EIU	YBX3	K562	Released		ENCSR667PLJ	shRNA	KD% = 79.2,77.8
knockdown followed by RNA-seq	YBX3-BGHLV20-HepG2	ENCSR494VSD	YBX3	HepG2	Released		ENCSR305XWT	shRNA	KD% = 57.6,79.6

RBP	Exp_UID	Cell_Line	ENCODE_ACCESSION	Control_ENCODE_ACCESSION	ENCODE_Antibody_ID	Antibody	Lot_num	Status	Project
YBX3	551	K562	ENCSR529FKI	ENCSR660VTT	ENCAB021IRD	A303-070A	1	Released	ENCODE3
YBX3	729	HepG2	ENCSR735HOK	ENCSR700UGT	ENCAB021IRD	A303-070A	1	Released	ENCODE4

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
YBX3	ENCAB021IRD	A303-070A	1		Released, ENCODE3	Released, ENCODE3	BGHLV20-9, Released, ENCODE3	BGKLV24-11, Released, ENCODE3

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
YBX3	K562	shRNA	ENCSR306EIU	ENCSR667PLJ	CSDA_BGKLV24_11_17602,CSDA_BGKLV24_12_17603	non-target_BGKLV24_1_17594,non-target_BGKLV24_2_17595	79.2,77.8	Released	ENCODE3
YBX3	HepG2	shRNA			BGHLV17-51,BGHLV17-52	BGHLV17-1,BGHLV17-2		NotSatisfied	ENCODE3
YBX3	HepG2	shRNA	ENCSR494VSD	ENCSR305XWT	CSDA-30-BGHLV20-9_17710,CSDA-30-BGHLV20-10_17711	non-target-BGHLV20-1_17706,non-target-BGHLV20-2_17707	57.6,79.6	Released	ENCODE3

RNA Targets

YBX3 protein binds to 20,298 RNA regions.

Proteins bound to RNA

YBX3 RNA is bound by 26 proteins.

YBX3 protein has 20,298 RNA targets:

Only display 100 entries as example. Please click "View All" button to see all 20,298 entries.

RBP	Chr	Start	End	Strand	log2(fold change)	-log(p-value)	Cell Line	Matched Gene	Matched Area
YBX3	chr11	9451226	9451263	+	3.11885	7.44878	K562	IPO7	CDS
YBX3	chr19	10226183	10226213	-	4.35323	54.77224	K562	EIF3G	CDS,intron-Distal,intron-Proximal
YBX3	chr22	30824588	30824615	+	3.19141	5.58482	K562	MTFP1, RP4-539M6.19	3'-UTR,CDS
YBX3	chr15	90414750	90414778	-	3.82813	3.02250	K562	C15orf38-AP3S2, AP3S2	3'-UTR,5'-UTR,CDS,intron-Distal
YBX3	chr7	44247013	44247037	+	3.34904	3.86052	K562	YKT6	CDS
YBX3	chr2	54125053	54125124	-	3.80747	10.39433	K562	PSME4	3'-UTR,CDS,intron-Distal
YBX3	chr6	26199126	26199132	-	4.41347	63.81132	K562	HIST1H3D, HIST1H2AD	5'-UTR,CDS,intron-Distal
YBX3	chr1	1560996	1561032	+	3.19821	3.06971	K562	MIB2	3'-UTR,CDS,intron-Distal
YBX3	chr21	30397031	30397062	+	3.68593	8.28018	K562	USP16	5'-UTR
YBX3	chr13	114564807	114564883	-	3.22979	3.34572	K562	GAS6	intron-Distal
YBX3	chr6	43519034	43519059	-	3.93705	9.34382	K562	XPO5	3'-UTR,CDS,intron-Distal,intron-Proximal
YBX3	chr16	66967520	66967578	-	3.78638	22.39570	K562	FAM96B	5'-UTR,CDS,intron-Distal
YBX3	chr7	158234333	158234451	-	6.73614	25.56572	HepG2	PTPRN2	intron-Distal
YBX3	chr21	39431032	39431086	-	3.78898	9.26008	K562	DSCR4	intron-Distal
YBX3	chr11	61732225	61732231	-	4.24806	400.00000	K562	FTH1	3'-UTR,CDS,intron-Distal,intron-Proximal
YBX3	chr2	27278709	27278817	+	4.61351	13.70771	K562	AGBL5	CDS
YBX3	chr20	2987989	2988034	+	3.83078	6.85451	K562	PTPRA	CDS,intron-Proximal
YBX3	chr17	79589194	79589239	-	3.37270	7.38488	K562	NPLOC4	5'-UTR,CDS,intron-Distal
YBX3	chr15	72855742	72855788	+	5.77833	56.15204	K562	ARIH1	CDS,intron-Distal
YBX3	chr11	32610187	32610192	+	3.31567	24.54746	K562	EIF3M	5'-UTR,CDS,intron-Distal
YBX3	chr17	27829680	27829742	+	3.30660	4.08171	K562	TAOK1	CDS,intron-Proximal
YBX3	chr6	38650621	38650636	-	4.33605	8.68374	K562	GLO1	CDS,intron-Distal
YBX3	chr10	855653	855700	-	4.01001	3.25175	K562	LARP4B	3'-UTR,intron-Distal
YBX3	chr11	95565227	95565246	+	4.14153	4.72754	K562	CEP57	3'-UTR
YBX3	chr16	87438062	87438121	+	3.81531	13.72241	K562	MAP1LC3B	3'-UTR
YBX3	chr7	2416590	2416598	+	3.83866	13.24894	K562	EIF3B	CDS
YBX3	chr19	4037029	4037083	+	4.34459	5.05413	HepG2	PIAS4	intron-Distal
YBX3	chr19	50154167	50154212	+	4.23785	4.30417	K562	SCAF1	CDS
YBX3	chr7	116557845	116557868	+	3.85494	9.54328	K562	CAPZA2	3'-UTR,CDS
YBX3	chr16	3714316	3714330	-	3.72061	26.34065	K562	TRAP1	CDS,intron-Distal
YBX3	chr1	161196715	161196728	+	3.68808	3.01531	K562	TOMM40L	CDS,intron-Distal
YBX3	chr15	50596232	50596292	-	3.24383	7.19068	K562	GABPB1	3'-UTR,CDS,intron-Distal,intron-Proximal
YBX3	chr19	58906073	58906117	+	3.59986	18.63369	HepG2	RPS5	3'-UTR,CDS
YBX3	chr21	47604273	47604308	-	4.14836	14.59237	K562	SPATC1L	5'-UTR,intron-Distal
YBX3	chr19	49676673	49676735	+	4.49544	5.79022	K562	TRPM4	intron-Distal
YBX3	chr17	78346321	78346372	+	3.36602	4.70209	K562	RNF213	CDS
YBX3	chr1	183522990	183523043	+	3.29281	4.30677	K562	SMG7	3'-UTR,intron-Distal
YBX3	chr2	47129891	47129993	-	5.39217	12.98654	K562	MCFD2	3'-UTR,intron-Distal
YBX3	chr2	128947798	128947901	+	4.46756	6.26929	K562	UGGT1	3'-UTR
YBX3	chr18	34376939	34377001	-	3.58132	11.31847	K562	TPGS2	CDS,intron-Distal
YBX3	chr17	48470099	48470138	-	3.27852	15.43676	K562	LRRC59	CDS,intron-Distal,intron-Proximal
YBX3	chrX	48336512	48336557	+	4.16296	7.93174	K562	FTSJ1	CDS,intron-Distal,intron-Proximal
YBX3	chr16	24135215	24135237	+	4.05021	20.90823	K562	PRKCB	CDS
YBX3	chr19	42373141	42373150	+	4.02499	400.00000	K562	RPS19	3'-UTR,CDS
YBX3	chr19	54657456	54657487	+	3.94470	10.81363	K562	CNOT3	3'-UTR,CDS
YBX3	chrX	153221834	153221860	-	3.80731	3.45072	HepG2	HCFC1	CDS,intron-Distal
YBX3	chr17	40444058	40444079	+	3.34828	7.02805	K562	STAT5A	5'-UTR,CDS,intron-Distal
YBX3	chr5	145610249	145610313	+	4.12531	13.07366	K562	RBM27	CDS
YBX3	chr13	113485839	113485865	+	4.41310	4.77486	K562	ATP11A	CDS,intron-Proximal
YBX3	chr6	32944468	32944502	+	3.96122	12.02158	K562	BRD2	3'-UTR,CDS
YBX3	chr6	34392482	34392508	-	3.34766	400.00000	K562	RPS10, RPS10-NUDT3	CDS,intron-Distal
YBX3	chr1	146757003	146757029	+	3.04520	6.82055	K562	CHD1L	CDS
YBX3	chr18	12326241	12326357	+	4.33078	16.43977	K562	TUBB6	3'-UTR,intron-Distal
YBX3	chr19	42373210	42373233	+	4.28511	400.00000	K562	RPS19	3'-UTR,CDS
YBX3	chr11	61096874	61096922	-	3.54319	13.40626	K562	DDB1	CDS,intron-Distal,intron-Proximal
YBX3	chr1	54509044	54509060	-	3.12062	8.56198	K562	TMEM59	CDS,intron-Distal,intron-Proximal
YBX3	chr22	49845125	49845166	-	4.10633	3.22721	K562	C22orf34	intron-Distal
YBX3	chr11	17098734	17098758	-	3.33284	14.21724	HepG2	RPS13	CDS,intron-Distal
YBX3	chr8	117657187	117657203	-	4.81610	26.46930	K562	EIF3H	3'-UTR,intron-Distal
YBX3	chr17	73038698	73038736	-	3.49947	12.33937	K562	ATP5H	CDS,intron-Distal
YBX3	chr7	100275199	100275226	+	3.12583	12.29422	K562	GNB2	CDS
YBX3	chr2	101622849	101622861	+	3.40837	8.60308	K562	RPL31	3'-UTR,intron-Distal
YBX3	chr7	42971715	42971727	-	3.76118	8.70833	K562	PSMA2	5'-UTR,CDS,intron-Distal
YBX3	chr9	114204604	114204612	-	3.51207	9.30098	K562	KIAA0368	CDS,intron-Distal
YBX3	chr5	179991675	179991704	+	3.14038	3.90824	K562	CNOT6	CDS
YBX3	chr17	76220732	76220771	+	3.49069	10.75033	K562	BIRC5	3'-UTR
YBX3	chr5	179135978	179135987	+	3.66905	7.37965	K562	CANX	3'-UTR,5'-UTR,CDS,intron-Proximal
YBX3	chr6	56966315	56966396	+	4.03830	3.66655	K562	ZNF451	CDS,intron-Distal
YBX3	chr6	33240451	33240454	+	3.42510	400.00000	K562	RPS18	5'-UTR,CDS
YBX3	chr6	34735702	34735746	+	3.30768	38.48385	K562	SNRPC	CDS
YBX3	chr3	50295029	50295143	+	5.38332	12.44810	K562	GNAI2	3'-UTR,CDS
YBX3	chr16	57496979	57496990	+	3.31834	4.11795	K562	POLR2C	CDS
YBX3	chr17	75196675	75196753	+	3.74284	3.22721	K562	SEC14L1	CDS
YBX3	chr2	75061430	75061439	+	4.10312	12.97102	K562	HK2	5'-UTR
YBX3	chr11	2417150	2417177	+	4.03565	12.97102	K562	CD81	CDS
YBX3	chr11	73965486	73965548	+	3.67021	7.02805	K562	PPME1	3'-UTR
YBX3	chr20	56093898	56093905	-	3.62884	15.17681	K562	CTCFL	CDS,intron-Distal
YBX3	chr11	18422415	18422420	+	3.75287	400.00000	K562	LDHA	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal
YBX3	chr20	57561912	57561918	+	3.26150	3.50044	K562	NELFCD	CDS
YBX3	chrX	71495420	71495449	-	3.56458	13.19858	HepG2	RPS4X	CDS,intron-Distal
YBX3	chr19	39924045	39924058	-	3.22727	25.90490	HepG2	RPS16	3'-UTR,CDS,intron-Distal,intron-Proximal
YBX3	chr11	2152452	2152462	-	5.98843	400.00000	HepG2	IGF2	3'-UTR,intron-Distal
YBX3	chr21	34805041	34805057	+	3.54643	11.48475	K562	IFNGR2	3'-UTR,CDS
YBX3	chr1	220178629	220178634	-	3.12157	8.13345	K562	EPRS	3'-UTR,CDS,intron-Distal
YBX3	chr20	48770076	48770142	-	3.85156	3.47999	HepG2	TMEM189-UBE2V1, TMEM189	CDS,intron-Distal
YBX3	chr22	39382061	39382074	+	4.14950	3.46958	K562	APOBEC3B	CDS
YBX3	chr16	69153252	69153313	-	3.34257	4.30677	K562	CHTF8	3'-UTR,CDS,intron-Distal
YBX3	chr12	124111650	124111703	-	3.69874	5.57640	K562	EIF2B1	CDS,intron-Distal
YBX3	chr12	93968799	93968908	+	4.20126	13.19940	K562	SOCS2	3'-UTR,CDS
YBX3	chr12	120636656	120636691	-	3.37226	24.58912	HepG2	RPLP0	5'-UTR,CDS,intron-Distal,intron-Proximal
YBX3	chr3	183899485	183899542	+	3.31879	12.51889	K562	EIF2B5, AP2M1	CDS,intron-Distal
YBX3	chr14	102449839	102449878	+	3.37436	9.19667	K562	DYNC1H1	CDS
YBX3	chr2	231936902	231936907	+	4.18269	3.89948	K562	PSMD1	5'-UTR,CDS,intron-Distal,intron-Proximal
YBX3	chr17	6919811	6919842	+	3.46024	7.36929	K562	RNASEK-C17orf49, C17orf49	CDS,intron-Proximal
YBX3	chr3	12877666	12877682	-	3.27266	400.00000	K562	RPL32	CDS,intron-Distal
YBX3	chr16	81009737	81009815	-	3.58118	8.47737	K562	CMC2	3'-UTR,intron-Distal,intron-Proximal
YBX3	chr9	127622504	127622532	-	3.66507	62.08362	K562	RPL35	CDS,intron-Distal
YBX3	chr9	130699707	130699718	-	3.88247	13.57861	K562	DPM2	CDS,intron-Distal,intron-Proximal
YBX3	chr15	68504150	68504202	-	3.81204	7.22820	K562	RP11-315D16.2, CLN6	CDS,intron-Distal,intron-Proximal
YBX3	chr6	44222526	44222587	-	4.39560	4.31428	K562	SLC35B2	3'-UTR,CDS,intron-Distal

26 proteins are bound to YBX3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	10852245	10852253	-	3'-UTR,intron-Distal	4.23181	4.48692	K562	YBX3
chr12	10851997	10852134	-	3'-UTR,intron-Distal,intron-Proximal	3.58734	13.04208	HepG2	PABPN1
chr12	10852072	10852094	-	3'-UTR,intron-Distal,intron-Proximal	3.88078	9.88356	K562	YBX3
chr12	10853851	10853942	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.45720	12.53487	K562	YBX3
chr12	10852035	10852072	-	3'-UTR,intron-Distal,intron-Proximal	3.11391	8.56198	K562	YBX3
chr12	10853850	10853956	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.82062	10.22710	K562	METAP2
chr12	10851826	10851872	-	3'-UTR,intron-Distal,intron-Proximal	5.90769	8.21523	HepG2	SUB1
chr12	10851913	10851990	-	3'-UTR,intron-Distal,intron-Proximal	3.13585	6.09950	HepG2	BCLAF1
chr12	10875778	10875826	-	5'-UTR,intron-Distal	3.35172	7.76316	K562	YBX3
chr12	10875774	10875886	-	5'-UTR,intron-Distal	3.11570	3.02717	K562	DDX3X
chr12	10875726	10875778	-	5'-UTR,intron-Distal	4.26005	8.68374	K562	YBX3
chr12	10875597	10875725	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.14894	16.67790	K562	METAP2
chr12	10862681	10862770	-	CDS,intron-Distal,intron-Proximal	4.61263	6.92290	HepG2	AQR
chr12	10865850	10865935	-	CDS,intron-Distal,intron-Proximal	3.82910	22.36185	HepG2	BCLAF1
chr12	10856676	10856709	-	CDS,intron-Distal	4.99389	9.05435	K562	LIN28B
chr12	10862683	10862726	-	CDS,intron-Distal,intron-Proximal	4.38156	4.36390	K562	PUM1
chr12	10865792	10865864	-	CDS,intron-Distal,intron-Proximal	3.23050	12.38664	HepG2	PPIG
chr12	10862662	10862750	-	CDS,intron-Distal,intron-Proximal	3.65500	7.70675	K562	AQR
chr12	10862654	10862718	-	CDS,intron-Distal,intron-Proximal	3.23382	4.86973	K562	UCHL5
chr12	10868290	10868366	-	CDS,intron-Distal,intron-Proximal	4.51878	3.80886	HepG2	TRA2A
chr12	10871726	10871822	-	CDS,intron-Distal,intron-Proximal	4.46379	4.97857	HepG2	AQR
chr12	10865806	10865841	-	CDS,intron-Distal,intron-Proximal	3.12082	5.10726	K562	UCHL5
chr12	10865897	10865933	-	CDS,intron-Distal,intron-Proximal	4.12286	13.34751	HepG2	GRWD1
chr12	10868328	10868386	-	CDS,intron-Distal,intron-Proximal	3.29107	7.20615	HepG2	BCLAF1
chr12	10862645	10862742	-	CDS,intron-Distal,intron-Proximal	3.26819	14.92292	HepG2	PPIG
chr12	10856699	10856750	-	CDS,intron-Distal,intron-Proximal	3.03958	4.65667	HepG2	PPIG
chr12	10865841	10865896	-	CDS,intron-Distal	3.07080	5.30139	K562	UCHL5
chr12	10865793	10865860	-	CDS,intron-Distal,intron-Proximal	3.53942	5.57105	HepG2	SRSF1
chr12	10868292	10868337	-	CDS,intron-Distal,intron-Proximal	4.59427	13.33970	HepG2	GRWD1
chr12	10862552	10862578	-	CDS,intron-Distal	3.62219	7.24294	K562	YBX3
chr12	10856645	10856748	-	CDS,intron-Distal,intron-Proximal	3.02766	6.05977	K562	UCHL5
chr12	10865831	10865909	-	CDS,intron-Distal	3.73291	6.31765	K562	LIN28B
chr12	10870701	10870720	-	CDS,intron-Distal,intron-Proximal	3.75660	4.51739	HepG2	BCLAF1
chr12	10856647	10856714	-	CDS,intron-Distal,intron-Proximal	3.42755	7.10982	HepG2	GRWD1
chr12	10865923	10865933	-	CDS,intron-Distal,intron-Proximal	3.00985	6.05977	K562	UCHL5
chr12	10865891	10865938	-	CDS,intron-Distal,intron-Proximal	3.44820	5.85200	K562	BUD13
chr12	10868290	10868330	-	CDS,intron-Distal,intron-Proximal	3.69796	5.03105	K562	BUD13
chr12	10868292	10868316	-	CDS,intron-Distal,intron-Proximal	3.66721	4.48684	HepG2	ZNF800
chr12	10868291	10868373	-	CDS,intron-Distal,intron-Proximal	3.35737	5.28705	K562	PUM1
chr12	10862661	10862725	-	CDS,intron-Distal,intron-Proximal	3.23390	6.09414	HepG2	U2AF1
chr12	10870620	10870730	-	CDS,intron-Distal,intron-Proximal	3.50839	3.47285	K562	PRPF8
chr12	10868291	10868334	-	CDS,intron-Distal,intron-Proximal	3.14974	8.91678	K562	UCHL5
chr12	10875427	10875451	-	CDS,intron-Distal	4.35301	3.93614	HepG2	AQR
chr12	10862508	10862659	-	CDS,intron-Distal	3.35424	11.21317	HepG2	GRWD1
chr12	10871677	10871684	-	CDS,intron-Distal,intron-Proximal	3.53034	3.68471	HepG2	BCLAF1
chr12	10865786	10865897	-	CDS,intron-Distal,intron-Proximal	3.29445	18.62182	HepG2	GRWD1
chr12	10862668	10862772	-	CDS,intron-Distal,intron-Proximal	4.36965	5.63851	K562	SF3B4
chr12	10865804	10865933	-	CDS,intron-Distal,intron-Proximal	3.06550	8.93949	K562	PUM1
chr12	10856709	10856727	-	CDS,intron-Distal	4.91214	8.55954	K562	LIN28B
chr12	10870685	10870701	-	CDS,intron-Distal,intron-Proximal	3.08034	4.61799	HepG2	BCLAF1
chr12	10862508	10862550	-	CDS,intron-Distal	3.95316	4.96634	HepG2	PPIG
chr12	10875453	10875488	-	CDS,intron-Distal	4.55876	4.65678	K562	METAP2
chr12	10868292	10868328	-	CDS,intron-Distal,intron-Proximal	3.97810	9.83905	HepG2	BCLAF1
chr12	10865816	10865933	-	CDS,intron-Distal,intron-Proximal	3.25491	7.67473	K562	ZNF800
chr12	10875387	10875488	-	CDS,intron-Distal	3.42897	17.32904	HepG2	PRPF8
chr12	10862550	10862603	-	CDS,intron-Distal	4.78809	5.56813	HepG2	PPIG
chr12	10871716	10871789	-	CDS,intron-Distal,intron-Proximal	4.00525	6.20417	HepG2	BUD13
chr12	10862505	10862552	-	CDS,intron-Distal,intron-Proximal	3.17817	8.03396	K562	YBX3
chr12	10862668	10862729	-	CDS,intron-Distal,intron-Proximal	3.33062	9.94881	HepG2	U2AF2
chr12	10862668	10862716	-	CDS,intron-Distal,intron-Proximal	3.99538	3.39686	HepG2	G3BP1
chr12	10865896	10865923	-	CDS,intron-Distal	3.47893	8.75642	K562	UCHL5
chr12	10868476	10868488	-	intron-Distal,intron-Proximal	4.70719	3.31322	HepG2	SF3B4
chr12	10868443	10868476	-	intron-Distal,intron-Proximal	4.78319	3.31322	HepG2	SF3B4
chr12	10870327	10870420	-	intron-Distal,intron-Proximal	3.63565	6.82255	HepG2	U2AF2
chr12	10863349	10863404	-	intron-Distal,intron-Proximal	3.65568	7.61543	HepG2	U2AF2
chr12	10862848	10863013	-	intron-Distal,intron-Proximal	3.09675	5.34873	K562	KHSRP
chr12	10863050	10863104	-	intron-Distal	4.84950	7.09092	HepG2	TIA1
chr12	10856567	10856650	-	intron-Distal,intron-Proximal	3.78459	5.83621	K562	AQR
chr12	10863049	10863095	-	intron-Distal	3.91086	4.79983	HepG2	U2AF2
chr12	10855051	10855118	-	intron-Distal,intron-Proximal	3.24868	6.66973	HepG2	HNRNPC
chr12	10870295	10870346	-	intron-Distal,intron-Proximal	3.13200	4.01262	HepG2	HNRNPM
chr12	10862713	10862763	-	intron-Distal,intron-Proximal	5.19210	19.80012	HepG2	SF3B4
chr12	10862820	10862923	-	intron-Distal,intron-Proximal	4.19984	25.23211	HepG2	XPO5
chr12	10869756	10869820	-	intron-Distal	5.49728	11.52296	HepG2	HNRNPM
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

The YBX3 protein binds to its own RNA.

RBP	Chr	Start	End	Strand	log2(fold change)	-log(p-value)	Cell Line	Matched Gene	Matched Area
YBX3	chr12	10852245	10852253	-	4.23181	4.48692	K562	YBX3	3'-UTR,intron-Distal
YBX3	chr12	10852072	10852094	-	3.88078	9.88356	K562	YBX3	3'-UTR,intron-Distal,intron-Proximal
YBX3	chr12	10853851	10853942	-	3.45720	12.53487	K562	YBX3	3'-UTR,CDS,intron-Distal,intron-Proximal
YBX3	chr12	10852035	10852072	-	3.11391	8.56198	K562	YBX3	3'-UTR,intron-Distal,intron-Proximal
YBX3	chr12	10875778	10875826	-	3.35172	7.76316	K562	YBX3	5'-UTR,intron-Distal
YBX3	chr12	10875726	10875778	-	4.26005	8.68374	K562	YBX3	5'-UTR,intron-Distal
YBX3	chr12	10862552	10862578	-	3.62219	7.24294	K562	YBX3	CDS,intron-Distal
YBX3	chr12	10862505	10862552	-	3.17817	8.03396	K562	YBX3	CDS,intron-Distal,intron-Proximal

Diffrential Expression

3,033 differentially expressed genes after Knockdown/Knockout YBX3 protein.

121 RBPs can affect the levels of YBX3.

3,033 differentially expressed genes after Knockdown/Knockout YBX3 protein :

Only display 100 entries as example. Please click "View All" button to see all 3,033 entries.

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ANKIB1	ENSG00000001629.5	616.20090	993.83580	-0.68960	7.87290	6.17140	HepG2	YBX3
CD99	ENSG00000002586.13	1877.89940	1542.18600	0.28400	3.18900	2.09560	HepG2	YBX3
MAD1L1	ENSG00000002822.11	257.04850	181.97850	0.49820	2.57160	1.59380	HepG2	YBX3
DBNDD1	ENSG00000003249.9	331.90970	590.48220	-0.83110	10.12640	8.24260	HepG2	YBX3
ALS2	ENSG00000003393.10	931.17600	1115.79170	-0.26090	2.23320	1.32070	HepG2	YBX3
TFPI	ENSG00000003436.10	9114.64060	7033.17490	0.37390	7.35850	5.71760	HepG2	YBX3
FKBP4	ENSG00000004478.5	1866.18740	1477.08630	0.33720	4.13030	2.88070	HepG2	YBX3
KDM1A	ENSG00000004487.11	2469.82000	2954.01040	-0.25830	3.02220	1.95540	HepG2	YBX3
ARHGAP33	ENSG00000004777.14	183.96810	119.30970	0.62460	2.56970	1.59220	HepG2	YBX3
UPF1	ENSG00000005007.8	1307.72500	1079.97730	0.27600	2.59800	1.61400	HepG2	YBX3
SLC25A5	ENSG00000005022.5	4385.15000	3498.68830	0.32570	5.04020	3.66660	HepG2	YBX3
LIG3	ENSG00000005156.7	491.32370	690.11970	-0.49020	4.79760	3.45930	HepG2	YBX3
SPPL2B	ENSG00000005206.12	251.20970	165.65400	0.60060	3.19490	2.09980	HepG2	YBX3
WDR54	ENSG00000005448.12	144.67110	221.48420	-0.61440	3.13030	2.04610	HepG2	YBX3
KMT2E	ENSG00000005483.15	1378.39120	1784.87430	-0.37280	4.84020	3.49690	HepG2	YBX3
LAMP2	ENSG00000005893.11	2983.69470	3746.98900	-0.32860	4.97510	3.61130	HepG2	YBX3
ASB4	ENSG00000005981.8	67.63530	197.15070	-1.54340	11.66530	9.66190	HepG2	YBX3
CRLF1	ENSG00000006016.6	3464.50440	2826.94330	0.29330	3.14300	2.05720	HepG2	YBX3
SYNRG	ENSG00000006114.11	603.15320	755.16330	-0.32430	2.25510	1.33780	HepG2	YBX3
TMEM132A	ENSG00000006118.10	498.12140	385.64620	0.36910	2.47530	1.51670	HepG2	YBX3
AP2B1	ENSG00000006125.12	3397.14350	4077.05550	-0.26320	3.42240	2.29130	HepG2	YBX3
CX3CL1	ENSG00000006210.6	1753.57030	1245.75940	0.49320	7.85620	6.15580	HepG2	YBX3
JHDM1D	ENSG00000006459.6	1409.17820	1847.82980	-0.39100	5.14690	3.75730	HepG2	YBX3
IFRD1	ENSG00000006652.9	1307.29690	645.48380	1.01800	24.21370	21.58670	HepG2	YBX3
VPS41	ENSG00000006715.11	535.02130	704.55350	-0.39710	2.46500	1.50790	HepG2	YBX3
PAX6	ENSG00000007372.16	15.75300	42.36740	-1.42730	2.78120	1.76100	HepG2	YBX3
RPUSD1	ENSG00000007376.3	95.42570	53.81420	0.82630	2.58580	1.60430	HepG2	YBX3
TEAD3	ENSG00000007866.14	819.53480	649.40760	0.33560	2.58530	1.60430	HepG2	YBX3
MYLIP	ENSG00000007944.10	74.94680	121.39680	-0.69580	2.37680	1.43720	HepG2	YBX3
NADK	ENSG00000008130.11	887.18730	723.63240	0.29390	2.36020	1.42380	HepG2	YBX3
CYTH3	ENSG00000008256.11	100.28860	185.27210	-0.88550	4.69580	3.37230	HepG2	YBX3
ADAM22	ENSG00000008277.10	145.39030	208.21980	-0.51820	2.39020	1.44790	HepG2	YBX3
CYB561	ENSG00000008283.11	66.19700	32.00070	1.04860	2.59900	1.61460	HepG2	YBX3
AASS	ENSG00000008311.10	285.59240	463.45210	-0.69850	6.59590	5.03300	HepG2	YBX3
MGST1	ENSG00000008394.8	1112.35280	1776.89670	-0.67570	5.08430	3.70210	HepG2	YBX3
PKD1	ENSG00000008710.13	502.14540	284.37040	0.82020	7.42960	5.77770	HepG2	YBX3
SEC62	ENSG00000008952.12	1770.05960	2176.36630	-0.29810	3.45940	2.31980	HepG2	YBX3
RPS20	ENSG00000008988.5	5676.52250	4042.72270	0.48960	7.88830	6.18590	HepG2	YBX3
MASP2	ENSG00000009724.12	141.52050	85.25680	0.73100	2.93240	1.88320	HepG2	YBX3
MLXIPL	ENSG00000009950.11	2255.25310	1196.44610	0.91440	6.93920	5.34090	HepG2	YBX3
ZNF207	ENSG00000010244.12	2541.18840	3173.87340	-0.32070	3.80370	2.60510	HepG2	YBX3
STARD3NL	ENSG00000010270.9	331.15640	470.41610	-0.50640	3.98960	2.76360	HepG2	YBX3
NCAPD2	ENSG00000010292.8	3019.37880	3763.72920	-0.31790	4.69910	3.37510	HepG2	YBX3
IDS	ENSG00000010404.13	638.30640	857.10540	-0.42520	4.29950	3.03280	HepG2	YBX3
HFE	ENSG00000010704.14	101.67560	157.68110	-0.63300	2.49570	1.53220	HepG2	YBX3
LYPLA2	ENSG00000011009.6	1010.54040	700.75590	0.52800	5.27150	3.86820	HepG2	YBX3
TSPAN9	ENSG00000011105.7	868.02690	669.85520	0.37380	2.98970	1.92970	HepG2	YBX3
SYT7	ENSG00000011347.5	227.04920	155.97170	0.54160	2.66080	1.66480	HepG2	YBX3
PIK3C2A	ENSG00000011405.9	2086.13090	2602.47210	-0.31910	4.30000	3.03290	HepG2	YBX3
ANLN	ENSG00000011426.6	1916.80290	2475.83590	-0.36920	4.20550	2.94910	HepG2	YBX3
WIZ	ENSG00000011451.13	384.10020	272.74430	0.49380	2.95390	1.90240	HepG2	YBX3
RABGAP1	ENSG00000011454.12	668.61390	1049.86630	-0.65100	9.80420	7.94580	HepG2	YBX3
MAP4K3	ENSG00000011566.10	1711.07140	2298.64490	-0.42590	6.68800	5.11590	HepG2	YBX3
TMEM159	ENSG00000011638.6	89.87800	194.27200	-1.11200	6.98490	5.38360	HepG2	YBX3
SEMA3B	ENSG00000012171.13	1139.37300	1470.19260	-0.36780	4.29680	3.03040	HepG2	YBX3
NR1H4	ENSG00000012504.9	485.17660	628.76260	-0.37400	2.88230	1.84280	HepG2	YBX3
CLDN11	ENSG00000013297.6	135.49330	232.62540	-0.77980	4.65810	3.33930	HepG2	YBX3
SLC25A39	ENSG00000013306.11	2154.33090	1553.21710	0.47190	6.04990	4.54050	HepG2	YBX3
MVP	ENSG00000013364.14	530.72340	669.53060	-0.33520	2.42930	1.47850	HepG2	YBX3
GPRC5A	ENSG00000013588.5	54.19390	93.98620	-0.79430	2.28200	1.35930	HepG2	YBX3
ZC3H3	ENSG00000014164.6	202.04990	134.46380	0.58740	2.70920	1.70340	HepG2	YBX3
MTMR11	ENSG00000014914.15	31.67730	105.36090	-1.73380	8.08080	6.35680	HepG2	YBX3
DPEP1	ENSG00000015413.5	162.70150	106.65650	0.60920	2.41540	1.46690	HepG2	YBX3
MATR3	ENSG00000015479.13	6142.88150	7572.95140	-0.30190	4.84020	3.49690	HepG2	YBX3
CHDH	ENSG00000016391.6	2212.39480	1743.80350	0.34330	4.51630	3.21640	HepG2	YBX3
GLT8D1	ENSG00000016864.12	1397.43180	1122.21750	0.31630	3.27150	2.16340	HepG2	YBX3
ATP2C1	ENSG00000017260.15	1158.12260	1420.57180	-0.29470	3.04670	1.97660	HepG2	YBX3
SRCIN1	ENSG00000017373.11	173.33480	101.36490	0.77390	3.71320	2.53240	HepG2	YBX3
SLC38A5	ENSG00000017483.10	1088.91180	836.60650	0.38020	4.09020	2.84970	HepG2	YBX3
CYP24A1	ENSG00000019186.5	190.11520	709.91620	-1.90080	44.85820	41.27690	HepG2	YBX3
SYT13	ENSG00000019505.3	7.87650	43.50160	-2.46540	5.61370	4.16600	HepG2	YBX3
CD74	ENSG00000019582.10	1973.11960	1283.60690	0.62020	6.21080	4.68580	HepG2	YBX3
SAMD4A	ENSG00000020577.9	783.45700	1085.53640	-0.47050	5.78940	4.31590	HepG2	YBX3
PLEKHB1	ENSG00000021300.9	2094.38390	1715.90500	0.28750	3.33230	2.21510	HepG2	YBX3
SLC7A9	ENSG00000021488.8	84.12470	30.48870	1.46420	5.09810	3.71400	HepG2	YBX3
SPAST	ENSG00000021574.7	630.25870	801.63490	-0.34700	2.97270	1.91750	HepG2	YBX3
CPS1	ENSG00000021826.10	960.62730	1318.30610	-0.45660	5.99120	4.49480	HepG2	YBX3
C8B	ENSG00000021852.8	328.43370	236.09930	0.47610	2.85750	1.82250	HepG2	YBX3
RNF10	ENSG00000022840.11	1419.41760	1684.69390	-0.24720	2.38850	1.44670	HepG2	YBX3
ZDHHC6	ENSG00000023041.7	464.50920	587.25890	-0.33830	2.33740	1.40420	HepG2	YBX3
RNH1	ENSG00000023191.12	656.73050	361.56420	0.86090	10.72510	8.78400	HepG2	YBX3
ERP44	ENSG00000023318.7	1361.45660	1101.60940	0.30540	3.02410	1.95670	HepG2	YBX3
BIRC3	ENSG00000023445.9	163.30080	75.86210	1.10600	6.01390	4.51070	HepG2	YBX3
DEPDC1	ENSG00000024526.12	398.74030	615.10230	-0.62540	6.75260	5.17420	HepG2	YBX3
PHF20	ENSG00000025293.11	774.63880	1019.53890	-0.39630	4.24270	2.98160	HepG2	YBX3
KPNA6	ENSG00000025800.9	1444.04030	1718.69260	-0.25120	2.47940	1.51950	HepG2	YBX3
RTEL1-TNFRSF6B	ENSG00000026036.16	245.21660	151.68820	0.69280	4.02060	2.79020	HepG2	YBX3
RNASET2	ENSG00000026297.11	3513.45860	2335.43510	0.58910	5.89380	4.41030	HepG2	YBX3
IFNGR1	ENSG00000027697.8	1565.44140	2147.70000	-0.45620	6.27170	4.73620	HepG2	YBX3
BCLAF1	ENSG00000029363.11	2802.87730	3799.56260	-0.43890	7.21080	5.58530	HepG2	YBX3
HMGB3	ENSG00000029993.10	696.26730	973.26570	-0.48320	5.61450	4.16620	HepG2	YBX3
FAM13B	ENSG00000031003.6	319.63270	413.05580	-0.36990	2.21820	1.30960	HepG2	YBX3
RANBP3	ENSG00000031823.10	1116.66790	857.41190	0.38100	3.13440	2.04980	HepG2	YBX3
TSSC1	ENSG00000032389.8	635.08730	490.08830	0.37380	2.80190	1.77690	HepG2	YBX3
PNPLA6	ENSG00000032444.11	406.15450	286.74620	0.50220	3.53900	2.38640	HepG2	YBX3
ZCCHC8	ENSG00000033030.9	399.20260	549.64390	-0.46140	3.73320	2.54750	HepG2	YBX3
CHPF2	ENSG00000033100.10	635.56670	410.21310	0.63160	7.00810	5.40450	HepG2	YBX3
UBA6	ENSG00000033178.8	1086.85720	1332.84910	-0.29440	2.92720	1.88040	HepG2	YBX3
ATP6V0A1	ENSG00000033627.10	920.85090	1125.69230	-0.28980	2.58360	1.60310	HepG2	YBX3
SLC4A7	ENSG00000033867.12	935.55950	1222.07230	-0.38540	4.30700	3.03920	HepG2	YBX3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

121 RBPs can affect the gene expression of YBX3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
YBX3	ENSG00000060138.8	2093.69980	1471.96690	0.50820	5.97180	4.45780	HepG2	AATF
YBX3	ENSG00000060138.8	1565.31700	2708.56790	-0.79110	11.25020	9.55900	HepG2	ABCF1
YBX3	ENSG00000060138.8	2709.40980	2043.71060	0.40670	8.74630	7.78920	HepG2	ACO1
YBX3	ENSG00000060138.8	2359.49450	2053.13770	0.20050	2.16910	1.47990	HepG2	AKAP8L
YBX3	ENSG00000060138.8	938.85020	1328.90940	-0.50130	3.95410	2.89690	HepG2	BCLAF1
YBX3	ENSG00000060138.8	3970.65010	3132.79240	0.34180	3.19500	2.55710	HepG2	BOP1
YBX3	ENSG00000060138.8	2514.97470	2028.97970	0.30970	2.69770	1.48360	HepG2	BUD13
YBX3	ENSG00000060138.8	2132.96650	3328.60490	-0.64210	5.86210	4.41880	HepG2	CCAR1
YBX3	ENSG00000060138.8	801.75540	2023.64420	-1.33570	27.74150	25.65050	HepG2	CIRBP
YBX3	ENSG00000060138.8	1828.52210	4802.80810	-1.39320	18.08260	16.18810	HepG2	CNOT7
YBX3	ENSG00000060138.8	3010.67880	2230.13630	0.43290	5.10170	3.62780	HepG2	CPSF7
YBX3	ENSG00000060138.8	987.92120	1552.67890	-0.65230	12.00570	9.96920	HepG2	YBX3
YBX3	ENSG00000060138.8	3654.00350	2643.89460	0.46670	5.39110	4.54750	HepG2	CELF1
YBX3	ENSG00000060138.8	2370.24690	2842.87800	-0.26230	4.50000	3.59090	HepG2	DAZAP1
YBX3	ENSG00000060138.8	917.41030	1624.20260	-0.82410	13.36900	12.01600	HepG2	DDX21
YBX3	ENSG00000060138.8	1955.61170	2465.83310	-0.33450	2.42980	1.83990	HepG2	DDX3X
YBX3	ENSG00000060138.8	1793.79000	2336.86510	-0.38160	3.38280	2.27390	HepG2	DDX5
YBX3	ENSG00000060138.8	1090.69800	1955.22280	-0.84210	24.08350	22.57160	HepG2	DKC1
YBX3	ENSG00000060138.8	1777.38720	1511.15970	0.23400	3.09970	2.41530	HepG2	DNAJC2
YBX3	ENSG00000060138.8	1217.39240	2064.38400	-0.76190	10.33080	8.69450	HepG2	EEF2
YBX3	ENSG00000060138.8	2579.09090	2054.35830	0.32810	3.09780	1.85540	HepG2	EIF2S2
YBX3	ENSG00000060138.8	1105.27750	1533.69940	-0.47260	5.68160	4.21260	HepG2	EIF3G
YBX3	ENSG00000060138.8	888.44550	2250.08480	-1.34060	23.73910	21.90920	HepG2	EIF4A3
YBX3	ENSG00000060138.8	5147.41150	2191.20500	1.23200	18.18280	16.52470	HepG2	EIF4B
YBX3	ENSG00000060138.8	3032.37180	3468.94020	-0.19400	2.35100	1.78890	HepG2	ETF1
YBX3	ENSG00000060138.8	2010.29790	1547.73040	0.37720	3.78220	2.47570	HepG2	FASTKD2
YBX3	ENSG00000060138.8	3945.42500	2734.91390	0.52860	4.69160	3.71040	HepG2	FIP1L1
YBX3	ENSG00000060138.8	4623.65450	2880.95930	0.68240	2.95130	1.90060	HepG2	FTO
YBX3	ENSG00000060138.8	1836.07270	1330.26140	0.46480	5.02500	3.97840	HepG2	FUBP3
YBX3	ENSG00000060138.8	1321.62710	2106.25650	-0.67240	7.36170	6.29970	HepG2	G3BP1
YBX3	ENSG00000060138.8	1575.31510	2236.53170	-0.50560	4.36330	3.23310	HepG2	G3BP2
YBX3	ENSG00000060138.8	1190.71380	1492.13410	-0.32560	2.29880	1.48960	HepG2	GEMIN5
YBX3	ENSG00000060138.8	1258.38450	1728.87460	-0.45830	4.23340	2.97190	HepG2	GNB2L1
YBX3	ENSG00000060138.8	1938.33400	3260.41380	-0.75020	9.57770	8.43490	HepG2	GPKOW
YBX3	ENSG00000060138.8	2522.23670	1951.03110	0.37040	6.51270	5.09350	HepG2	HDGF
YBX3	ENSG00000060138.8	967.11400	1539.20290	-0.67040	9.08450	8.01230	HepG2	HNRNPA1
YBX3	ENSG00000060138.8	3142.60420	2612.66600	0.26630	3.73430	2.67330	HepG2	HNRNPA2B1
YBX3	ENSG00000060138.8	986.69570	1712.08730	-0.79510	12.30900	10.93660	HepG2	HNRNPC
YBX3	ENSG00000060138.8	2787.66850	2133.61600	0.38570	3.61740	2.82540	HepG2	HNRNPK
YBX3	ENSG00000060138.8	1777.01430	3111.46270	-0.80810	12.65870	11.44170	HepG2	HNRNPLL
YBX3	ENSG00000060138.8	1561.04450	1886.72460	-0.27340	2.42660	1.53460	HepG2	HNRNPM
YBX3	ENSG00000060138.8	1484.92930	1700.76730	-0.19580	1.89390	1.38300	HepG2	HNRNPU
YBX3	ENSG00000060138.8	2290.97940	1737.27610	0.39900	9.59840	8.31660	HepG2	ILF2
YBX3	ENSG00000060138.8	1283.50320	2271.72150	-0.82370	11.32710	10.03220	HepG2	MAGOH
YBX3	ENSG00000060138.8	1555.65970	2213.06560	-0.50850	6.98270	5.75570	HepG2	MSI2
YBX3	ENSG00000060138.8	2723.62760	1858.41380	0.55140	7.43670	5.48100	HepG2	NAA15
YBX3	ENSG00000060138.8	1890.06450	2338.04290	-0.30690	2.04130	1.49320	HepG2	NCBP2
YBX3	ENSG00000060138.8	3338.99620	2818.98970	0.24410	2.20710	1.52540	HepG2	NOL12
YBX3	ENSG00000060138.8	978.80440	1380.82310	-0.49640	2.29740	1.31250	HepG2	NONO
YBX3	ENSG00000060138.8	2352.90990	4390.44270	-0.89990	7.24970	5.76650	HepG2	PABPC1
YBX3	ENSG00000060138.8	2387.80120	1683.45770	0.50420	10.58730	9.10890	HepG2	PARN
YBX3	ENSG00000060138.8	3071.17940	2029.77890	0.59740	16.72650	15.43970	HepG2	PCBP1
YBX3	ENSG00000060138.8	1114.19030	1385.87920	-0.31480	2.88850	1.63020	HepG2	PKM
YBX3	ENSG00000060138.8	1471.91540	2690.96060	-0.87040	18.13960	16.79330	HepG2	PUF60
YBX3	ENSG00000060138.8	3193.48690	2856.55960	0.16080	2.13380	1.59960	HepG2	PUM1
YBX3	ENSG00000060138.8	1546.12310	2081.62100	-0.42910	8.51690	7.53690	HepG2	PUS1
YBX3	ENSG00000060138.8	2738.28080	1852.13780	0.56400	3.11160	2.36690	HepG2	RAVER1
YBX3	ENSG00000060138.8	4110.55950	3058.56730	0.42640	6.75480	5.49090	HepG2	RBM15
YBX3	ENSG00000060138.8	4821.61720	2899.39930	0.73370	22.47570	21.28520	HepG2	RBM22
YBX3	ENSG00000060138.8	1445.78110	2030.07480	-0.48970	6.09830	5.13330	HepG2	RBM25
YBX3	ENSG00000060138.8	6595.66400	4639.39500	0.50750	3.65450	1.90040	HepG2	RBM47
YBX3	ENSG00000060138.8	1229.01290	1658.70280	-0.43260	3.39610	2.22060	HepG2	RCC2
YBX3	ENSG00000060138.8	1924.00540	2298.59060	-0.25660	2.96100	2.40430	HepG2	NELFE
YBX3	ENSG00000060138.8	1817.85030	2194.93810	-0.27190	2.21280	1.59280	HepG2	RPLP0
YBX3	ENSG00000060138.8	1219.45750	1819.42680	-0.57720	3.73720	2.64040	HepG2	RPS10
YBX3	ENSG00000060138.8	1355.11130	1883.79810	-0.47520	4.84580	3.80500	HepG2	RPS2
YBX3	ENSG00000060138.8	2494.35570	4824.81820	-0.95180	11.59560	10.00450	HepG2	RPS3A
YBX3	ENSG00000060138.8	1710.12230	1147.44600	0.57560	5.15600	4.11550	HepG2	RRP9
YBX3	ENSG00000060138.8	1928.31310	1514.60350	0.34830	5.86960	4.98600	HepG2	SAFB2
YBX3	ENSG00000060138.8	2137.07750	3079.79860	-0.52720	6.58850	5.53820	HepG2	SF3B1
YBX3	ENSG00000060138.8	2223.72350	2580.18320	-0.21450	3.07650	2.34190	HepG2	SLBP
YBX3	ENSG00000060138.8	2722.99060	1888.66420	0.52770	3.81180	2.67410	HepG2	SMNDC1
YBX3	ENSG00000060138.8	5271.19220	3426.79260	0.62120	4.75460	3.71820	HepG2	SNRNP70
YBX3	ENSG00000060138.8	6482.46190	3274.77760	0.98500	60.54590	58.98600	HepG2	SRFBP1
YBX3	ENSG00000060138.8	1567.37630	2244.46680	-0.51800	11.04800	10.23980	HepG2	SRSF1
YBX3	ENSG00000060138.8	2579.97630	3313.68850	-0.36110	2.37750	1.45840	HepG2	SRSF3
YBX3	ENSG00000060138.8	3428.53730	2656.91500	0.36770	7.04530	6.11090	HepG2	SRSF5
YBX3	ENSG00000060138.8	3537.29360	1826.05020	0.95380	44.79080	43.10690	HepG2	SRSF9
YBX3	ENSG00000060138.8	898.19750	2843.30450	-1.66250	102.14240	100.22160	HepG2	SSB
YBX3	ENSG00000060138.8	5076.43130	3668.99740	0.46830	4.05510	2.52460	HepG2	SSRP1
YBX3	ENSG00000060138.8	2902.54700	1826.37940	0.66820	6.46440	4.67260	HepG2	STAU1
YBX3	ENSG00000060138.8	2683.50490	1730.87650	0.63250	4.59540	3.03370	HepG2	SUB1
YBX3	ENSG00000060138.8	2661.27160	3021.65850	-0.18320	2.44080	1.84900	HepG2	SUCLG1
YBX3	ENSG00000060138.8	1105.30260	1496.91450	-0.43760	3.10110	2.38910	HepG2	SUPV3L1
YBX3	ENSG00000060138.8	2688.51890	2017.59770	0.41410	6.93160	6.11380	HepG2	TAF15
YBX3	ENSG00000060138.8	1615.53180	3603.82590	-1.15750	8.10880	6.38570	HepG2	TBRG4
YBX3	ENSG00000060138.8	1392.03510	1003.32510	0.47230	3.70220	2.56910	HepG2	TFIP11
YBX3	ENSG00000060138.8	2739.50910	1853.70280	0.56340	9.49750	7.96540	HepG2	TIA1
YBX3	ENSG00000060138.8	854.39350	1652.58110	-0.95170	21.26360	20.11900	HepG2	TIAL1
YBX3	ENSG00000060138.8	2206.64280	1667.38850	0.40420	7.37390	6.52900	HepG2	TRIM56
YBX3	ENSG00000060138.8	1655.20590	884.26870	0.90440	12.99260	11.37590	HepG2	UCHL5
YBX3	ENSG00000060138.8	2465.09600	2112.93420	0.22230	2.44540	1.44930	HepG2	UTP18
YBX3	ENSG00000060138.8	3022.12120	4321.71680	-0.51600	3.64450	2.37930	HepG2	XPO5
YBX3	ENSG00000060138.8	761.67840	1473.54840	-0.95200	13.40820	11.83180	HepG2	XRN2
YBX3	ENSG00000060138.8	1241.11310	2048.37670	-0.72280	22.77160	21.18090	HepG2	ZC3H8
YBX3	ENSG00000060138.8	3088.35940	2260.80240	0.44990	13.08010	12.11370	HepG2	ZNF622
YBX3	ENSG00000060138.8	2679.12940	1850.50500	0.53370	3.94550	2.37030	HepG2	ZRANB2
YBX3	ENSG00000060138.8	2150.19170	3809.83550	-0.82530	10.03180	7.77990	K562	ABCF1
YBX3	ENSG00000060138.8	4489.44020	3485.42140	0.36510	5.67760	4.91060	K562	AGGF1
YBX3	ENSG00000060138.8	4431.84070	3626.70960	0.28910	2.59250	1.95920	K562	AKAP8L
YBX3	ENSG00000060138.8	1624.41120	3470.98150	-1.09540	24.97700	23.40310	K562	AQR
YBX3	ENSG00000060138.8	1446.19360	1886.99900	-0.38380	6.23120	4.76650	K562	BCLAF1
YBX3	ENSG00000060138.8	1616.31360	3123.11840	-0.95030	5.59720	4.34560	K562	BOP1
YBX3	ENSG00000060138.8	2008.18610	2653.55170	-0.40200	3.35560	1.75320	K562	BUD13
YBX3	ENSG00000060138.8	2214.82350	4557.76870	-1.04110	10.05530	8.01270	K562	CNOT7
YBX3	ENSG00000060138.8	2073.12130	3320.91010	-0.67980	6.86110	5.61750	K562	CPSF6
YBX3	ENSG00000060138.8	785.80110	1412.57150	-0.84610	8.74650	5.73830	K562	YBX3
YBX3	ENSG00000060138.8	1180.73290	1431.57010	-0.27790	2.62770	1.60030	K562	CSTF2
YBX3	ENSG00000060138.8	4216.66700	5135.84420	-0.28450	3.38040	2.30160	K562	CELF1
YBX3	ENSG00000060138.8	5103.09150	3902.78380	0.38680	7.02480	5.52100	K562	DKC1
YBX3	ENSG00000060138.8	1228.51720	1724.54430	-0.48930	3.35520	1.93830	K562	EEF2
YBX3	ENSG00000060138.8	2114.87910	2632.61760	-0.31590	4.31100	3.44230	K562	EIF2S2
YBX3	ENSG00000060138.8	1436.13550	1960.31580	-0.44890	4.73010	3.65700	K562	EIF4A3
YBX3	ENSG00000060138.8	3163.82950	4176.98270	-0.40080	7.34310	5.82640	K562	EIF4G2
YBX3	ENSG00000060138.8	1808.31090	3378.67770	-0.90180	8.12620	6.61140	K562	FMR1
YBX3	ENSG00000060138.8	1733.56120	2863.61710	-0.72410	6.61530	5.14230	K562	FTO
YBX3	ENSG00000060138.8	1580.37700	3170.76330	-1.00460	12.01080	10.34010	K562	GPKOW
YBX3	ENSG00000060138.8	2583.52140	3508.21940	-0.44140	5.92860	4.81940	K562	GRSF1
YBX3	ENSG00000060138.8	3027.78110	4265.62730	-0.49450	3.05140	1.39880	K562	HNRNPAB
YBX3	ENSG00000060138.8	1061.84000	1966.21480	-0.88890	17.64710	16.22120	K562	HNRNPC
YBX3	ENSG00000060138.8	1356.29900	1756.09280	-0.37270	3.57800	2.26570	K562	HNRNPF
YBX3	ENSG00000060138.8	2376.76260	2805.57590	-0.23930	2.49300	1.64440	K562	HNRNPU
YBX3	ENSG00000060138.8	2848.82010	4161.22410	-0.54660	2.91580	1.45650	K562	ILF2
YBX3	ENSG00000060138.8	1674.15570	3094.97180	-0.88650	8.96550	7.32050	K562	METAP2
YBX3	ENSG00000060138.8	3347.06510	4452.25910	-0.41160	4.54240	3.09220	K562	MSI2
YBX3	ENSG00000060138.8	2098.56220	2800.11720	-0.41610	8.78610	7.42080	K562	MTPAP
YBX3	ENSG00000060138.8	3948.02210	3022.23650	0.38540	2.50590	1.67580	K562	NAA15
YBX3	ENSG00000060138.8	2568.30890	3111.19210	-0.27660	6.10100	5.05320	K562	NSUN2
YBX3	ENSG00000060138.8	2601.68690	4378.68940	-0.75110	5.38060	3.64150	K562	PABPC1
YBX3	ENSG00000060138.8	2591.53320	1996.09810	0.37650	4.47770	2.72250	K562	PCBP1
YBX3	ENSG00000060138.8	2597.77050	1984.07640	0.38870	4.66190	3.82230	K562	PTBP1
YBX3	ENSG00000060138.8	3993.71140	4847.46010	-0.27950	3.41170	2.21960	K562	PUM1
YBX3	ENSG00000060138.8	3666.54950	4749.61540	-0.37340	6.50210	5.01480	K562	PUM2
YBX3	ENSG00000060138.8	6223.51320	3596.91150	0.79090	15.11910	13.89150	K562	PUS1
YBX3	ENSG00000060138.8	4563.90680	3504.47370	0.38100	6.13330	5.27600	K562	RBM15
YBX3	ENSG00000060138.8	1524.51650	1902.62640	-0.31960	2.60390	1.79070	K562	RBM22
YBX3	ENSG00000060138.8	2787.87970	1986.76410	0.48860	6.48080	4.82950	K562	SAFB
YBX3	ENSG00000060138.8	2536.95060	3069.93720	-0.27510	3.60190	2.67940	K562	SF3A3
YBX3	ENSG00000060138.8	1128.57950	1569.76780	-0.47600	3.82860	2.61740	K562	SUPV3L1
YBX3	ENSG00000060138.8	2635.68680	2236.37440	0.23690	2.19930	1.46600	K562	SYNCRIP
YBX3	ENSG00000060138.8	1596.06520	1968.55540	-0.30260	2.20590	1.56960	K562	TARDBP
YBX3	ENSG00000060138.8	1256.00910	1695.65920	-0.43300	3.59320	2.52230	K562	TIAL1
YBX3	ENSG00000060138.8	2863.46330	2113.28950	0.43820	3.24660	1.32560	K562	TRNAU1AP
YBX3	ENSG00000060138.8	2807.92870	3275.03490	-0.22200	2.99990	1.67710	K562	TROVE2
YBX3	ENSG00000060138.8	1116.57970	1343.35150	-0.26680	2.21730	1.49840	K562	U2AF2
YBX3	ENSG00000060138.8	1064.67520	1661.45830	-0.64200	7.41620	5.67370	K562	UCHL5
YBX3	ENSG00000060138.8	1944.12600	3298.86210	-0.76280	28.04120	26.05680	K562	UPF1
YBX3	ENSG00000060138.8	2675.85170	3775.99260	-0.49690	4.81610	3.22660	K562	UTP3
YBX3	ENSG00000060138.8	2140.40750	2822.73350	-0.39920	4.83290	3.65790	K562	WDR3
YBX3	ENSG00000060138.8	1189.44270	1691.91160	-0.50840	4.92980	3.14060	K562	XRN2
YBX3	ENSG00000060138.8	2545.41020	3910.17590	-0.61930	9.87850	8.13030	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

59 alternative splicing events after Knockdown/Knockout YBX3 protein :

Only display 100 entries as example. Please click "View All" button to see all 59 entries.

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	NUP153	ENSG00000124789.7	chr6	-	17669205	17669259			17665469	17665616	17669523	17669568	0.09700	0.00002	0.04631	included	K562	YBX3
SE	NASP	ENSG00000132780.12	chr1	+	46066056	46066129			46056894	46056942	46067926	46068037	0.08100	0.00001	0.04188	included	K562	YBX3
SE	TXNL4A	ENSG00000141759.10	chr18	-	77737597	77737701			77732874	77733856	77748239	77748593	0.13000	0.00000	0.02051	included	K562	YBX3
SE	HIST1H2AC	ENSG00000180573.8	chr6	+	26127925	26127989			26124430	26124861	26138281	26139344	0.14000	0.00000	0.00049	included	K562	YBX3
SE	NT5DC2	ENSG00000168268.6	chr3	-	52566178	52566342			52563165	52563350	52567521	52567793	0.09500	0.00000	0.01144	included	K562	YBX3
SE	PKP4	ENSG00000144283.17	chr2	+	159533250	159533379			159530394	159530512	159535092	159535166	-0.17600	0.00002	0.05783	excluded	K562	YBX3
SE	WSB1	ENSG00000109046.10	chr17	+	25634769	25634945			25633807	25633908	25636125	25636298	-0.33500	0.00001	0.04188	excluded	K562	YBX3
SE	ADAT2	ENSG00000189007.11	chr6	-	143751401	143751614			143749748	143749821	143753641	143753748	-0.09900	0.00000	0.02312	excluded	K562	YBX3
SE	EED	ENSG00000074266.13	chr11	+	85981124	85981199			85978936	85979603	85988021	85988180	0.22700	0.00002	0.02007	included	HepG2	YBX3
SE	UHRF2	ENSG00000147854.12	chr9	+	6465743	6465846			6460572	6460791	6475390	6475500	0.30900	0.00000	0.00402	included	HepG2	YBX3
SE	GPS1	ENSG00000169727.8	chr17	+	80010131	80010335			80009772	80009840	80011149	80011242	0.08900	0.00011	0.07903	included	HepG2	YBX3
SE	PRKAB2	ENSG00000131791.6	chr1	-	146632375	146632412			146630797	146631221	146633290	146633359	0.12900	0.00006	0.05360	included	HepG2	YBX3
SE	U2AF1	ENSG00000160201.7	chr21	-	44520562	44520629			44515803	44515853	44521475	44521542	0.13600	0.00002	0.02008	included	HepG2	YBX3
SE	C17orf76-AS1	ENSG00000175061.13	chr17	+	16342841	16343017			16342640	16342728	16343498	16343567	0.16400	0.00000	0.00000	included	HepG2	YBX3
SE	PRR3	ENSG00000204576.7	chr6	+	30529104	30529285			30525090	30525227	30529610	30529901	0.42700	0.00011	0.07903	included	HepG2	YBX3
SE	CHCHD7	ENSG00000170791.13	chr8	+	57125320	57125468			57124357	57124396	57127156	57127226	0.22800	0.00004	0.03629	included	HepG2	YBX3
SE	FAM60A	ENSG00000139146.9	chr12	-	31457915	31458057			31451010	31451158	31478957	31479070	0.20000	0.00000	0.00049	included	HepG2	YBX3
SE	FARSB	ENSG00000116120.8	chr2	-	223511519	223511715			223507569	223507724	223513458	223513514	0.07600	0.00013	0.09254	included	HepG2	YBX3
SE	CLDND1	ENSG00000080822.12	chr3	-	98240496	98240562			98239976	98240286	98241692	98241829	0.15400	0.00000	0.00402	included	HepG2	YBX3
SE	MYL6	ENSG00000092841.14	chr12	+	56554409	56554454			56554026	56554104	56555170	56555358	-0.10100	0.00000	0.00000	excluded	HepG2	YBX3
SE	SLC26A6	ENSG00000225697.6	chr3	-	48669677	48669829			48669312	48669477	48670406	48670545	-0.25500	0.00000	0.00301	excluded	HepG2	YBX3
SE	NDUFV3	ENSG00000160194.13	chr21	+	44323291	44324386			44317036	44317157	44328973	44329215	-0.08400	0.00003	0.03593	excluded	HepG2	YBX3
SE	HNRNPA2B1	ENSG00000122566.16	chr7	-	26231041	26231270			26230612	26230748	26232114	26232197	-0.30700	0.00001	0.01045	excluded	HepG2	YBX3
SE	EPB41	ENSG00000159023.14	chr1	+	29386933	29386996			29379615	29379824	29391493	29391670	-0.38900	0.00001	0.01132	excluded	HepG2	YBX3
SE	NASP	ENSG00000132780.12	chr1	+	46072992	46074009			46072153	46072263	46078840	46078920	-0.18300	0.00000	0.00002	excluded	HepG2	YBX3
SE	WBP5	ENSG00000185222.7	chrX	+	102612010	102612089			102611372	102611534	102612542	102613397	-0.18900	0.00005	0.04538	excluded	HepG2	YBX3
SE	SORBS1	ENSG00000095637.16	chr10	-	97174250	97174619			97170389	97170534	97181717	97181830	-0.31900	0.00003	0.03167	excluded	HepG2	YBX3
SE	BPIFB2	ENSG00000078898.6	chr20	+	31596005	31596184			31595405	31595566	31596346	31596489	-0.27300	0.00000	0.00443	excluded	HepG2	YBX3
SE	AFMID	ENSG00000183077.11	chr17	+	76201683	76201819			76198783	76198832	76202026	76202131	-0.08400	0.00005	0.04538	excluded	HepG2	YBX3
SE	GPR126	ENSG00000112414.10	chr6	+	142762044	142762090			142759348	142759501	142764473	142767403	-0.18900	0.00000	0.00009	excluded	HepG2	YBX3
SE	UTRN	ENSG00000152818.14	chr6	+	145148483	145148522			145142017	145142154	145148746	145148812	-0.17700	0.00000	0.00081	excluded	HepG2	YBX3
SE	CLSTN1	ENSG00000171603.12	chr1	-	9797555	9797612			9795942	9796100	9801151	9801314	-0.09500	0.00000	0.00002	excluded	HepG2	YBX3
SE	EVI5	ENSG00000067208.10	chr1	-	93128976	93129009			93101758	93101893	93131495	93131549	-0.79500	0.00001	0.01629	excluded	HepG2	YBX3
SE	LRIF1	ENSG00000121931.11	chr1	-	111493909	111495437			111492472	111492745	111506242	111506701	-0.37300	0.00000	0.00111	excluded	HepG2	YBX3
SE	NGLY1	ENSG00000151092.12	chr3	-	25761620	25761682			25760765	25761126	25770623	25770809	-0.27800	0.00009	0.07038	excluded	HepG2	YBX3
SE	ZNHIT3	ENSG00000108278.7	chr17	+	34842778	34842810			34842571	34842629	34848656	34848743	-0.13100	0.00007	0.06143	excluded	HepG2	YBX3
SE	BTG3	ENSG00000154640.10	chr21	-	18976462	18976594			18970934	18971142	18977177	18977315	-0.19700	0.00014	0.09626	excluded	HepG2	YBX3
SE	FAM189B	ENSG00000160767.16	chr1	-	155224190	155224247			155223415	155223523	155224443	155224755	-0.29100	0.00010	0.07649	excluded	HepG2	YBX3
SE	MAPK9	ENSG00000050748.13	chr5	-	179706795	179707000			179696279	179696409	179707439	179707608	-0.10000	0.00003	0.02973	excluded	HepG2	YBX3
SE	GRB7	ENSG00000141738.9	chr17	+	37902165	37902253			37901980	37902041	37902361	37902455	-0.20500	0.00011	0.07903	excluded	HepG2	YBX3
SE	RPS24	ENSG00000138326.14	chr10	+	79799961	79799983			79796951	79797062	79800372	79800455	-0.16600	0.00000	0.00000	excluded	HepG2	YBX3
RI	NELFCD	ENSG00000101158.8	chr20	+	57569696	57570188			57569696	57569879	57569980	57570188	0.07400	0.00011	0.06564	included	HepG2	YBX3
RI	NR1H3	ENSG00000025434.14	chr11	+	47283097	47283569			47283097	47283277	47283469	47283569	0.15500	0.00010	0.06564	included	HepG2	YBX3
RI	FBXW5	ENSG00000159069.9	chr9	-	139836998	139837395			139836998	139837147	139837220	139837395	0.09100	0.00019	0.07915	included	HepG2	YBX3
RI	STAT2	ENSG00000170581.9	chr12	-	56748561	56749135			56748561	56748647	56749059	56749135	0.27800	0.00018	0.07915	included	HepG2	YBX3
RI	PFKL	ENSG00000141959.12	chr21	+	45739233	45740030			45739233	45739298	45739966	45740030	0.06000	0.00020	0.07915	included	HepG2	YBX3
RI	C17orf76-AS1	ENSG00000175061.13	chr17	+	16342640	16343567			16342640	16342728	16342894	16343567	-0.11300	0.00004	0.04218	excluded	HepG2	YBX3
RI	C17orf76-AS1	ENSG00000175061.13	chr17	+	16342640	16343567			16342640	16343017	16343498	16343567	-0.05700	0.00000	0.00002	excluded	HepG2	YBX3
RI	GAS5	ENSG00000234741.3	chr1	-	173833394	173834420			173833394	173833842	173834366	173834420	-0.08300	0.00016	0.07915	excluded	HepG2	YBX3
RI	SRRM1	ENSG00000133226.12	chr1	+	24973157	24975520			24973157	24973280	24975349	24975520	-0.25400	0.00001	0.01410	excluded	HepG2	YBX3
MXE	TRIM24	ENSG00000122779.12	chr7	+	138255574	138255748	138258251	138258387	138252225	138252399	138261117	138261190	0.11900	0.00019	0.08688	1included	HepG2	YBX3
MXE	BPIFB2	ENSG00000078898.6	chr20	+	31607385	31607556	31608133	31608201	31606867	31606921	31608347	31608393	0.09800	0.00000	0.00000	1included	HepG2	YBX3
MXE	AFMID	ENSG00000183077.11	chr17	+	76200908	76200981	76201683	76201819	76198783	76198832	76202026	76202131	0.22900	0.00016	0.08688	1included	HepG2	YBX3
MXE	CMIP	ENSG00000153815.12	chr16	+	81730164	81730272	81733289	81733406	81727043	81727092	81735264	81735405	0.10200	0.00005	0.03536	1included	HepG2	YBX3
MXE	LYPLA2	ENSG00000011009.6	chr1	+	24120552	24120626	24120713	24120815	24120349	24120420	24120916	24121090	-0.12600	0.00019	0.08688	2included	HepG2	YBX3
MXE	U2AF1	ENSG00000160201.7	chr21	-	44520562	44520650	44521475	44521542	44515803	44515853	44524424	44524512	-0.12600	0.00004	0.03174	2included	HepG2	YBX3
MXE	C17orf76-AS1	ENSG00000175061.13	chr17	+	16342640	16342728	16342973	16343017	16342351	16342374	16343498	16343567	-0.10400	0.00000	0.00007	2included	HepG2	YBX3
MXE	SERPINA1	ENSG00000197249.8	chr14	-	94845800	94845948	94848928	94849578	94844712	94844977	94854896	94855000	-0.10000	0.00000	0.00000	2included	HepG2	YBX3
MXE	SERPINA1	ENSG00000197249.8	chr14	-	94847207	94847478	94848928	94849578	94845800	94845948	94854896	94855000	-0.11900	0.00000	0.00000	2included	HepG2	YBX3

22 RBPs can affect the splicing of YBX3 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	YBX3	ENSG00000060138.8	chr12	-	10862506	10862713	10856649	10856747	10865809	10865932	-0.31100	0.00000	0.00001	excluded	K562	SRSF1
SE	YBX3	ENSG00000060138.8	chr12	-	10862506	10862713	10856649	10856747	10865809	10865932	0.18500	0.00000	0.01560	included	K562	LIN28B
SE	YBX3	ENSG00000060138.8	chr12	-	10862506	10862713	10856649	10856747	10865809	10865932	0.19500	0.00000	0.00001	included	K562	WDR43
SE	YBX3	ENSG00000060138.8	chr12	-	10862506	10862713	10856649	10856747	10865809	10865925	0.18600	0.00308	0.03586	included	HepG2	U2AF2
SE	YBX3	ENSG00000060138.8	chr12	-	10871678	10871742	10868292	10868382	10875448	10875906	-0.11300	0.00002	0.00066	excluded	K562	PUS1
SE	YBX3	ENSG00000060138.8	chr12	-	10862506	10862713	10856649	10856747	10865809	10865932	-0.07600	0.00717	0.08156	excluded	K562	PUS1
SE	YBX3	ENSG00000060138.8	chr12	-	10862506	10862713	10856649	10856747	10865809	10865932	-0.20700	0.00000	0.00029	excluded	HepG2	SRSF1
SE	YBX3	ENSG00000060138.8	chr12	-	10862506	10862713	10856649	10856747	10865809	10865932	-0.11600	0.00120	0.04328	excluded	K562	HNRNPU
A3SS	YBX3	ENSG00000060138.8	chr12	-	10852208	10852274	10852208	10852242	10853852	10853952	-0.10600	0.00000	0.00000	shorter	HepG2	SF3A3
A3SS	YBX3	ENSG00000060138.8	chr12	-	10852208	10852274	10852208	10852253	10853852	10853952	0.05600	0.00000	0.00000	longer	K562	AQR
A5SS	YBX3	ENSG00000060138.8	chr12	-	10856649	10856747	10856658	10856747	10854558	10854733	0.05100	0.00025	0.05031	longer	K562	HNRNPU
RI	YBX3	ENSG00000060138.8	chr12	-	10862506	10865932	10862506	10862713	10865809	10865932	0.17100	0.00056	0.03683	included	HepG2	TBRG4
RI	YBX3	ENSG00000060138.8	chr12	-	10862506	10865932	10862506	10862713	10865809	10865932	-0.11500	0.00012	0.00232	excluded	HepG2	SF3A3
RI	YBX3	ENSG00000060138.8	chr12	-	10854558	10856747	10854558	10854733	10856658	10856747	0.08500	0.00019	0.02119	included	K562	HNRNPU
RI	YBX3	ENSG00000060138.8	chr12	-	10862506	10865932	10862506	10862713	10865809	10865932	0.14000	0.00083	0.00768	included	HepG2	U2AF2
RI	YBX3	ENSG00000060138.8	chr12	-	10862506	10865932	10862506	10862713	10865809	10865932	0.11900	0.00368	0.07242	included	HepG2	UCHL5
RI	YBX3	ENSG00000060138.8	chr12	-	10854558	10856747	10854558	10854733	10856649	10856747	0.05900	0.00001	0.00027	included	HepG2	PRPF8
RI	YBX3	ENSG00000060138.8	chr12	-	10862506	10865932	10862506	10862713	10865809	10865932	0.14100	0.00090	0.07636	included	HepG2	DDX55
RI	YBX3	ENSG00000060138.8	chr12	-	10862506	10865932	10862506	10862713	10865809	10865932	0.09700	0.00032	0.00518	included	HepG2	QKI
RI	YBX3	ENSG00000060138.8	chr12	-	10862506	10865932	10862506	10862713	10865809	10865932	0.13000	0.00003	0.00067	included	HepG2	TAF15
RI	YBX3	ENSG00000060138.8	chr12	-	10862506	10865932	10862506	10862713	10865809	10865932	0.15500	0.00068	0.07479	included	K562	FTO
RI	YBX3	ENSG00000060138.8	chr12	-	10862506	10865932	10862506	10862713	10865809	10865932	0.11100	0.00087	0.01810	included	HepG2	G3BP1
RI	YBX3	ENSG00000060138.8	chr12	-	10862506	10865932	10862506	10862713	10865809	10865932	-0.17900	0.00245	0.04122	excluded	HepG2	TIAL1
RI	YBX3	ENSG00000060138.8	chr12	-	10862506	10865932	10862506	10862713	10865809	10865932	-0.17200	0.00089	0.04750	excluded	HepG2	HNRNPU
RI	YBX3	ENSG00000060138.8	chr12	-	10862506	10865932	10862506	10862713	10865809	10865932	0.08000	0.00245	0.04024	included	HepG2	FUBP3
RI	YBX3	ENSG00000060138.8	chr12	-	10862506	10865932	10862506	10862713	10865809	10865932	0.11200	0.00011	0.00352	included	HepG2	SRSF9
RI	YBX3	ENSG00000060138.8	chr12	-	10862506	10865932	10862506	10862713	10865809	10865932	0.10000	0.00051	0.00789	included	HepG2	HNRNPK
RI	YBX3	ENSG00000060138.8	chr12	-	10862506	10865932	10862506	10862713	10865809	10865932	-0.11200	0.00002	0.00552	excluded	HepG2	SRSF7
RI	YBX3	ENSG00000060138.8	chr12	-	10862506	10865932	10862506	10862713	10865809	10865932	0.22900	0.00002	0.00213	included	HepG2	XRN2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

YBX3

General Information

Functions

Localization(RBPImage: YBX3)

Domains (AlphaFold: YBX3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

YBX3 protein has 20,298 RNA targets:

26 proteins are bound to YBX3 RNA:

The YBX3 protein binds to its own RNA.

Diffrential Expression

3,033 differentially expressed genes after Knockdown/Knockout YBX3 protein :

121 RBPs can affect the gene expression of YBX3 :

59 alternative splicing events after Knockdown/Knockout YBX3 protein :

22 RBPs can affect the splicing of YBX3 :

No autoregularoty alternative splicing events between protein YBX3 and its RNA.