EIF3M

General Information

Gene Name : EIF3M
Gene ID : ENSG00000149100.12
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: EIF3M)

Not Available

Antibody Validation

Cell Signaling Technology: A304-761A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	EIF3M	ENSG00000149100.12	611.13	531.75	571.44	ENCSR000AEF
HepG2	EIF3M	ENSG00000149100.12	230.96	370.61	300.79	ENCSR985KAT
K562	EIF3M	ENSG00000149100.12	751.88	860.13	806.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
EIF3M		A304-761A	1				BGHcLV39-63, Submitted, ENCORE2	BGKcLV38-57, Submitted, ENCORE2

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
EIF3M	K562	CRISPR			EIF3M-BGKcLV38-57,EIF3M-BGKcLV38-58	NT-BGKcLV38-1,NT-BGKcLV38-2	53.3,50.6	Submitting	ENCORE2
EIF3M	HepG2	CRISPR			EIF3M-BGHcLV39-63,EIF3M-BGHcLV39-64	NT-BGHcLV39-1,NT-BGHcLV39-2	55.7,54.4	Submitting	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
EIF3M	Product_ID: A304-761A Lot_ID: 1 Source: Cell Signaling Technology Target Name: EIF3M-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for EIF3M is not avaliable on ENCORE database.

Proteins bound to RNA

EIF3M RNA is bound by 21 proteins.

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eCLIP assay for EIF3M is not avaliable on ENCORE database.

21 proteins are bound to EIF3M RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	32610138	32610206	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	6.43552	400.00000	HepG2	SUB1
chr11	32605377	32605461	+	5'-UTR,CDS	3.96512	400.00000	K562	DDX3X
chr11	32608560	32608589	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.74397	38.22405	K562	DDX3X
chr11	32605461	32605476	+	5'-UTR,CDS,intron-Proximal	4.27565	34.63637	K562	DDX3X
chr11	32610659	32610677	+	5'-UTR,CDS,intron-Distal	3.75754	33.87962	K562	YBX3
chr11	32610157	32610185	+	5'-UTR,CDS,intron-Distal	3.25100	29.04940	K562	YBX3
chr11	32610137	32610231	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.30636	26.60509	K562	TARDBP
chr11	32611094	32611104	+	3'-UTR,5'-UTR,CDS	3.76956	26.06833	K562	YBX3
chr11	32610613	32610659	+	5'-UTR,CDS,intron-Distal	3.42745	25.49232	K562	YBX3
chr11	32611104	32611113	+	3'-UTR,5'-UTR,CDS	3.65144	24.96642	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 78 entries

eCLIP assay for EIF3M is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for EIF3M is not available on ENCORE database.
105 RBPs can affect the levels of EIF3M.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for EIF3M is not available on ENCORE database.

105 RBPs can affect the gene expression of EIF3M :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
EIF3M	ENSG00000149100.8	3761.83910	2108.67880	0.83500	34.82490	33.05810	HepG2	UTP3
EIF3M	ENSG00000149100.8	1072.84820	2163.59310	-1.01200	26.75310	25.49490	HepG2	TIAL1
EIF3M	ENSG00000149100.8	4379.62170	7878.39260	-0.84710	22.42430	20.80180	K562	HNRNPC
EIF3M	ENSG00000149100.8	3243.81800	6794.24060	-1.06660	22.20880	19.41070	K562	TIAL1
EIF3M	ENSG00000149100.8	2286.20830	3568.01390	-0.64220	18.59470	17.41480	HepG2	PTBP1
EIF3M	ENSG00000149100.8	2341.64030	3864.20990	-0.72270	18.52800	17.11260	HepG2	QKI
EIF3M	ENSG00000149100.8	2936.73600	2000.08730	0.55410	17.46520	16.10660	HepG2	CKAP4
EIF3M	ENSG00000149100.8	2662.34930	3970.84240	-0.57670	16.22290	15.12020	HepG2	NELFE
EIF3M	ENSG00000149100.8	1783.01590	3636.01770	-1.02800	15.90010	14.58090	HepG2	DDX6
EIF3M	ENSG00000149100.8	14907.56030	10247.46660	0.54070	15.28510	12.87430	K562	DKC1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 132 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for EIF3M is not available on ENCORE database.

33 RBPs can affect the splicing of EIF3M :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	EIF3M	ENSG00000149100.8	chr11	+	32608557	32608690	32605377	32605475	32610139	32610473	-0.08200	0.00000	excluded	K562	SF3B4
SE	EIF3M	ENSG00000149100.8	chr11	+	32610557	32610681	32605384	32605475	32611092	32611197	-0.12200	0.00020	excluded	K562	XRCC6
SE	EIF3M	ENSG00000149100.8	chr11	+	32623252	32623368	32622234	32622378	32623824	32624369	-0.05800	0.00000	excluded	K562	AQR
SE	EIF3M	ENSG00000149100.8	chr11	+	32617448	32617593	32615411	32616559	32622234	32623047	-0.05200	0.00000	excluded	K562	AQR
SE	EIF3M	ENSG00000149100.8	chr11	+	32610557	32610681	32605384	32605475	32611092	32611197	-0.12800	0.00000	excluded	K562	FXR1
SE	EIF3M	ENSG00000149100.8	chr11	+	32608557	32608690	32605377	32605475	32611092	32611187	-0.13000	0.00152	excluded	K562	DROSHA
SE	EIF3M	ENSG00000149100.8	chr11	+	32616459	32616559	32615411	32615495	32622234	32622378	-0.05800	0.00000	excluded	K562	U2AF1
SE	EIF3M	ENSG00000149100.8	chr11	+	32610139	32610278	32605343	32605475	32611092	32611187	0.18200	0.00006	included	K562	TARDBP
SE	EIF3M	ENSG00000149100.8	chr11	+	32608591	32608690	32605383	32605475	32610139	32610250	-0.09200	0.00000	excluded	K562	TARDBP
SE	EIF3M	ENSG00000149100.8	chr11	+	32608557	32608690	32605377	32605475	32611092	32611197	-0.19600	0.00051	excluded	HepG2	XRCC6

Showing 1 to 10 of 103 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

EIF3M

General Information

Functions

Localization

Domains (AlphaFold: EIF3M)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for EIF3M is not avaliable on ENCORE database.

21 proteins are bound to EIF3M RNA:

eCLIP assay for EIF3M is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for EIF3M is not available on ENCORE database.

105 RBPs can affect the gene expression of EIF3M :

The Knockdown/knockout RNA-Seq assay for EIF3M is not available on ENCORE database.

33 RBPs can affect the splicing of EIF3M :

The Knockdown/knockout RNA-Seq assay for EIF3M is not avaliable on ENCORE database.