CSTF2

General Information

Gene Name       : CSTF2
Gene ID             : ENSG00000101811.13
Essential Gene : No

Functions

Localization(RBPImage: CSTF2)

Domains (AlphaFold: CSTF2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CSTF2ENSG00000101811.1325.3525.2825.32ENCSR000AEF
HepG2CSTF2ENSG00000101811.1326.9631.3029.13ENCSR985KAT
K562CSTF2ENSG00000101811.1336.5936.6736.63ENCSR000AEO

Assays

3 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 572ENCSR384MWOCSTF2HepG2ReleasedENCAB117EBXENCSR309GHK  
knockdown followed by RNA-seq CSTF2-BGKLV19-K562ENCSR885YOICSTF2K562ReleasedENCSR245BNJ   shRNAKD% = 71.2,70.7
knockdown followed by RNA-seq CSTF2-BGHLV17-HepG2ENCSR815JDYCSTF2HepG2ReleasedENCSR856ZRV   shRNAKD% = 91.0,86.3






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
CSTF2572HepG2ENCSR384MWOENCSR309GHKENCAB117EBXA301-092A1ReleasedENCODE3


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
CSTF2ENCAB117EBXA301-092A1Released, ENCODE3Released, ENCODE3BGHLV17-9, Released, ENCODE3BGKLV19-9, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
CSTF2K562shRNABGKLV08-9,BGKLV08-10BGKLV08-1,BGKLV08-2NotSatisfiedENCODE3
CSTF2K562shRNAENCSR885YOIENCSR245BNJCSTF2_BGKLV19_9A,CSTF2_BGKLV19_10ANT_BGKLV19_1A,NT_BGKLV19_2A71.2,70.7ReleasedENCODE3
CSTF2HepG2shRNABGHLV16-11,BGHLV16-12BGHLV16-1,BGHLV16-2NotSatisfiedENCODE3
CSTF2HepG2shRNAENCSR815JDYENCSR856ZRVCSTF2_BGHLV17_9,CSTF2_BGHLV17_10NT_BGHLV17_63,NT_BGHLV17_6491.0,86.3ReleasedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    CSTF2: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Speckles
  • Nuclear release mitosis












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    CSTF2Product_ID: A301-092A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: CSTF2-human    		 HepG2_Bethyl_A301-092A_1_CSTF2.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using CSTF2 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-CSTF2 antibody (lanes under 'CSTF2').
    		 CSTF2_Secondary_Western.png<br>Caption: Western blot following shRNA against CSTF2 in K562 and HepG2 whole cell lysate using CSTF2 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 2 and 3 are two different shRNAs against CSTF2. Lanes 5-7 follow the same pattern, but in HepG2. CSTF2 protein appears as the green band, GAPDH serves as a control and appears in red.
    		 K562_Bethyl_A301-092A_1_CSTF2.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using CSTF2 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 10% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-CSTF2 antibody (lanes under 'CSTF2').
    		 CSTF2_Secondary_Western.png<br>Caption: Western blot following shRNA against CSTF2 in K562 and HepG2 whole cell lysate using CSTF2 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 2 and 3 are two different shRNAs against CSTF2. Lanes 5-7 follow the same pattern, but in HepG2. CSTF2 protein appears as the green band, GAPDH serves as a control and appears in red.








    RNA Targets
    • CSTF2 protein binds to 2,738 RNA regions.  





    Proteins bound to RNA
    • CSTF2 RNA is bound by 7 proteins.  






    CSTF2 protein has 2,738 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 2,738 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    CSTF2chr3196688547196688633-4.668106.81682HepG2PIGZintron-Distal
    CSTF2chr1246400815246400892-4.336514.85401HepG2SMYD3intron-Distal
    CSTF2chr102001622320016246+3.525293.10834HepG2C10orf112intron-Distal
    CSTF2chr22064910120649166+3.682873.30829HepG2RHOB3'-UTR
    CSTF2chr47397704873977177-4.278067.08613HepG2ANKRD17intron-Distal
    CSTF2chr175608071156080771-3.729309.06143HepG2SRSF1, RP11-159D12.53'-UTR,intron-Distal,intron-Proximal,polyA_site
    CSTF2chr1768516036851657+3.525293.05863HepG2ALOX12P2intron-Distal
    CSTF2chr224617865446178745+5.051319.59196HepG2ATXN10intron-Distal
    CSTF2chr24478608944786169+3.201013.92142HepG2CAMKMTintron-Distal
    CSTF2chr234572803457335+3.841743.30829HepG2TRAPPC12intron-Distal
    CSTF2chr22054919720549265-4.078478.60427HepG2PUM2intron-Distal
    CSTF2chr234578193457854+3.176343.50680HepG2TRAPPC12intron-Distal
    CSTF2chr143145855831458651-5.0275718.44320HepG2STRN3intron-Distal
    CSTF2chr191580633215806403+4.130284.24478HepG2CYP4F12intron-Distal
    CSTF2chr119552677395526834+3.881433.69311HepG2CEP57intron-Distal
    CSTF2chr3114283993114284102-3.977333.77017HepG2ZBTB20intron-Distal
    CSTF2chr1205716889205716973-4.4033811.54757HepG2NUCKS1intron-Distal
    CSTF2chr2203627322203627442+4.334684.27913HepG2FAM117Bintron-Distal
    CSTF2chr76445968964459751-5.6949513.77245HepG2ZNF117, ERV3-1intron-Distal
    CSTF2chr83040505030405151+5.2757910.00638HepG2RBPMSintron-Distal
    CSTF2chr121108991811089999-4.899768.12692HepG2TAS2R14, PRR4intron-Distal,intron-Proximal
    CSTF2chrX108939647108939673-5.8127431.00718HepG2ACSL4intron-Distal
    CSTF2chr6158438131158438191+4.063293.88679HepG2SYNJ2intron-Distal,intron-Proximal
    CSTF2chr62417253624172635-4.048813.47315HepG2DCDC23'-UTR,intron-Distal
    CSTF2chr107500853175008615-4.307385.00436HepG2DNAJC9, MRPS163'-UTR,5'-UTR,intron-Distal,intron-Proximal
    CSTF2chr99397612593976234-3.962143.47315HepG2AUH3'-UTR,intron-Distal,intron-Proximal
    CSTF2chr81784678317846877+4.663407.03187HepG2PCM1intron-Distal
    CSTF2chr2101623029101623087+3.885504.12694HepG2RPL313'-UTR,intron-Distal
    CSTF2chr33846268438462783+4.396094.24478HepG2XYLBintron-Proximal
    CSTF2chr204950549549505581-4.166007.85597HepG2ADNPintron-Distal,intron-Proximal
    CSTF2chr168028118180281297-5.4609410.98400HepG2RP11-525K10.3intron-Distal
    CSTF2chr6166795848166795903-3.771313.50219HepG2MPC1intron-Distal
    CSTF2chr3171905136171905196+5.2915317.60836HepG2FNDC3Bintron-Distal
    CSTF2chr106977715869777214-3.999524.06464HepG2HERC4intron-Distal
    CSTF2chr6128330879128330974-5.327819.01569HepG2PTPRKintron-Distal
    CSTF2chr3196477542196477596+4.219547.83767HepG2PAK2intron-Distal
    CSTF2chr711924781192543-4.679477.82302HepG2ZFAND2Aintron-Distal,intron-Proximal
    CSTF2chr117511674075116807+4.952149.40537HepG2RPS33'-UTR,intron-Distal
    CSTF2chr13113584295113584393+4.480515.65087HepG2MCF2Lintron-Distal
    CSTF2chr222872977028729819-3.927563.77017HepG2TTC28intron-Distal
    CSTF2chr1966777866677840-3.988513.50219HepG2C33'-UTR,intron-Distal,intron-Proximal
    CSTF2chr162234575822345880+3.006053.74888HepG2POLR3E3'-UTR
    CSTF2chr1121528232152835-4.5282732.38979HepG2IGF23'-UTR,intron-Distal
    CSTF2chr6101028361101028435-3.848733.77350HepG2ASCC3intron-Distal
    CSTF2chr633190143319083-3.588523.23847HepG2SLC22A23intron-Distal
    CSTF2chr1146662116146662248-4.555587.07318HepG2FMO5intron-Distal
    CSTF2chr121117747411177562-3.555585.99944HepG2PRR4, TAS2R14intron-Distal
    CSTF2chr2191805143191805254+4.584005.06031HepG2GLSintron-Distal
    CSTF2chr13113363133113363194+4.084005.06031HepG2ATP11Aintron-Distal
    CSTF2chr108086555080865638+4.329165.61812HepG2ZMIZ1intron-Distal
    CSTF2chrY1487517114875241+4.045913.69311HepG2USP9Yintron-Distal
    CSTF2chr21132090711321001-4.596694.27913HepG2ROCK23'-UTR,intron-Distal
    CSTF2chr3191116245191116299+4.481825.45333HepG2CCDC503'-UTR
    CSTF2chrX7341580473415871-3.923523.10834HepG2FTXintron-Distal
    CSTF2chr619170451917069-3.610256.53019HepG2GMDSintron-Distal
    CSTF2chr34788417047884305+3.789573.47315HepG2DHX30intron-Distal
    CSTF2chr1958944065894503-3.682875.94173HepG2FUT5, NDUFA11, AC024592.12intron-Distal
    CSTF2chr177316369373163817-4.024593.69311HepG2SUMO2, HN13'-UTR,intron-Distal
    CSTF2chr223869338338693446-4.108844.47016HepG2CSNK1Eintron-Distal
    CSTF2chr63026960030269701-4.069933.41398HepG2HCG18, HCG17intron-Distal
    CSTF2chr4140625462140625497+5.7588313.16417HepG2MGST2intron-Distal
    CSTF2chr27161563371615709+3.407873.31721HepG2ZNF638intron-Distal,intron-Proximal
    CSTF2chr1958946265894693-4.5732714.48622HepG2FUT5, NDUFA11, AC024592.123'-UTR,intron-Distal,intron-Proximal,polyA_site
    CSTF2chr1692059709206020+3.510104.61887HepG2C16orf72intron-Distal
    CSTF2chr27000029270000409+3.234914.40876HepG2ANXA4intron-Distal
    CSTF2chr8121733588121733638-3.841293.39362HepG2SNTB1intron-Distal
    CSTF2chr1155437427155437552-4.223524.48405HepG2ASH1Lintron-Distal
    CSTF2chr4140310477140310555+5.1711210.80367HepG2NAA153'-UTR,intron-Distal
    CSTF2chr127070207270702169+4.396094.24478HepG2CNOT2intron-Distal
    CSTF2chr116814552868145614+3.025604.45725HepG2LRP5intron-Distal
    CSTF2chr26308413363084215+3.731223.50219HepG2EHBP1intron-Distal
    CSTF2chr1121532592153278-3.7902341.23550HepG2IGF23'-UTR,intron-Distal
    CSTF2chr141989066819890725-4.129674.86595HepG2CTD-2314B22.3intron-Distal
    CSTF2chr618709071871014-3.356774.61887HepG2GMDSintron-Distal
    CSTF2chr2136731856136731939-4.312368.60427HepG2DARSintron-Distal
    CSTF2chr205725847457258526+3.033333.87422HepG2STX16-NPEPL1intron-Distal
    CSTF2chr126633639266336496+3.593983.30829HepG2HMGA2intron-Distal
    CSTF2chr633205113320608-4.368335.93674HepG2SLC22A23intron-Distal
    CSTF2chr167867010378670208+3.802316.69862HepG2WWOXintron-Distal
    CSTF2chr79234801092348088-4.664418.01538HepG2CDK6intron-Distal
    CSTF2chr2208419167208419203+3.876054.24478HepG2CREB1intron-Distal
    CSTF2chr2178094666178094784-4.863298.01538HepG2NFE2L2intron-Distal
    CSTF2chr204018531540185398-5.5435115.01087HepG2CHD6intron-Distal
    CSTF2chrX150156400150156460+3.046253.07069HepG2HMGB33'-UTR
    CSTF2chr3195776022195776077-3.890393.30829HepG2TFRCintron-Distal,intron-Proximal
    CSTF2chr7138156106138156198+3.6855514.35268HepG2TRIM24intron-Distal
    CSTF2chrX133087730133087781-4.999528.84377HepG2GPC3intron-Distal
    CSTF2chr10133770079133770139+5.238137.62570HepG2PPP2R2D3'-UTR
    CSTF2chr64759487147594966+4.257684.47016HepG2CD2AP3'-UTR
    CSTF2chr1912113221211429+4.047784.49332HepG2STK11intron-Distal
    CSTF2chr79909078299090852-4.497704.65731HepG2ZNF394intron-Distal,intron-Proximal
    CSTF2chr165257620652576221-3.541974.99588HepG2TOX3intron-Distal
    CSTF2chr8133812202133812267+4.182024.86595HepG2PHF20L1intron-Distal
    CSTF2chr7158225408158225511-4.088043.30829HepG2PTPRN2intron-Distal
    CSTF2chr107762525677625297+4.324775.45333HepG2C10orf11intron-Distal
    CSTF2chr1782807578280833-3.629226.86031HepG2RPL26, RP11-849F2.7intron-Distal,intron-Proximal
    CSTF2chr2201207851201207887+3.145473.69143HepG2SPATS2Lintron-Distal
    CSTF2chr63071030930710439-3.7997410.04265HepG2FLOT15'-UTR,intron-Distal,intron-Proximal
    CSTF2chr7138270356138270417+3.426854.93958HepG2TRIM243'-UTR
    CSTF2chr4107018903107018957-3.979953.69311HepG2TBCKintron-Distal




    7 proteins are bound to CSTF2 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chrX100095823100095905+3'-UTR4.155353.95344K562PUM2
    chrX100075398100075465+5'-UTR,CDS,intron-Proximal4.210775.47892K562DDX3X
    chrX100078304100078388+CDS3.634623.02250K562YBX3
    chrX100088222100088349+CDS,intron-Proximal3.476063.69481K562UCHL5
    chrX100082977100083070+CDS,intron-Proximal5.703227.91936K562SF3B4
    chrX100083011100083086+CDS,intron-Proximal3.774934.36528HepG2U2AF2
    chrX100092779100092862+intron-Distal3.636143.06150K562KHSRP
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    No autoregularoty interactions between protein CSTF2 and its RNA.



    Diffrential Expression
    • 5,011 differentially expressed genes after Knockdown/Knockout CSTF2 protein.  





    • 69 RBPs can affect the levels of CSTF2.  







    5,011 differentially expressed genes after Knockdown/Knockout CSTF2 protein :

    Only display 100 entries as example. Please click "View All" button to see all 5,011 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    TSPAN6ENSG00000000003.101565.080601238.706400.337302.692701.62920HepG2CSTF2
    SEMA3FENSG00000001617.7340.75250230.329800.564902.699001.63460HepG2CSTF2
    M6PRENSG00000003056.3907.035601311.42220-0.531905.091403.69130HepG2CSTF2
    CASP10ENSG00000003400.10459.67600346.643200.407102.305101.31560HepG2CSTF2
    TFPIENSG00000003436.101693.857503426.19660-1.016309.043907.28200HepG2CSTF2
    SLC7A2ENSG00000003989.12610.791602198.34630-1.8477056.2033052.90070HepG2CSTF2
    PLXND1ENSG00000004399.8556.63390973.12190-0.805904.272102.96630HepG2CSTF2
    DHX33ENSG00000005100.8705.18870909.36230-0.366802.442101.42910HepG2CSTF2
    ACSM3ENSG00000005187.7543.10520330.130900.718105.901704.42220HepG2CSTF2
    FAM214BENSG00000005238.1536.1461072.04070-0.995002.764401.68660HepG2CSTF2
    WDR54ENSG00000005448.1254.07650112.75860-1.060203.753902.51980HepG2CSTF2
    ZNF195ENSG00000005801.12444.44890274.275400.696304.919503.54020HepG2CSTF2
    ITGA3ENSG00000005884.1314.66970102.67580-2.8072013.8842011.79780HepG2CSTF2
    ASB4ENSG00000005981.829.2001084.42810-1.531704.906503.52890HepG2CSTF2
    CX3CL1ENSG00000006210.62045.591201040.114500.9757016.0333013.81310HepG2CSTF2
    SPATA20ENSG00000006282.151289.03260818.944300.654406.684605.12230HepG2CSTF2
    MAP3K9ENSG00000006432.11190.36320341.51020-0.843205.995004.50770HepG2CSTF2
    JHDM1DENSG00000006459.6336.64920785.79380-1.2229017.5395015.25240HepG2CSTF2
    IFRD1ENSG00000006652.9603.05790409.360400.558804.262002.95740HepG2CSTF2
    PNPLA4ENSG00000006757.7195.89280122.206500.680602.711501.64460HepG2CSTF2
    PROM1ENSG00000007062.7230.04870386.04520-0.746805.166003.75950HepG2CSTF2
    KIAA0100ENSG00000007202.101605.576902204.04340-0.457104.769803.40670HepG2CSTF2
    GAS7ENSG00000007237.1480.0906035.558701.171303.022501.90090HepG2CSTF2
    PAX6ENSG00000007372.164.7484022.88300-2.268802.612701.56360HepG2CSTF2
    SPAG9ENSG00000008294.161180.033701728.35060-0.550605.225903.81060HepG2CSTF2
    CELSR3ENSG00000008300.10302.26950462.82630-0.614604.416403.09070HepG2CSTF2
    MGST1ENSG00000008394.8865.305201274.12880-0.558205.798704.33150HepG2CSTF2
    IL32ENSG00000008517.121493.644201113.804100.423203.542902.34040HepG2CSTF2
    RPS20ENSG00000008988.54430.959503351.016700.402904.159302.87110HepG2CSTF2
    REV3LENSG00000009413.111395.98970868.316600.684908.959807.20680HepG2CSTF2
    VTA1ENSG00000009844.111248.831501019.972800.291902.381201.37860HepG2CSTF2
    MLXIPLENSG00000009950.112041.260801266.529400.688503.661902.43710HepG2CSTF2
    BAZ1BENSG00000009954.61470.981901926.07450-0.388903.197602.04590HepG2CSTF2
    UQCRC1ENSG00000010256.61357.153401703.98340-0.328302.841301.75280HepG2CSTF2
    CD9ENSG00000010278.743.73060106.48620-1.284004.981003.59410HepG2CSTF2
    IDSENSG00000010404.13230.76510366.56670-0.667703.973502.71010HepG2CSTF2
    HFEENSG00000010704.1447.1306095.90570-1.025003.284702.11910HepG2CSTF2
    FYNENSG00000010810.13416.79790569.93400-0.451402.515801.48690HepG2CSTF2
    HIVEP2ENSG00000010818.4244.44300354.63080-0.536802.639901.58610HepG2CSTF2
    NME2ENSG00000011052.17292.22530114.990901.345503.731602.50070HepG2CSTF2
    AKAP8LENSG00000011243.13719.78060527.965800.447003.189302.03840HepG2CSTF2
    LARS2ENSG00000011376.5803.29090578.852200.472603.282702.11770HepG2CSTF2
    ANLNENSG00000011426.6751.888101519.40540-1.0149017.0034014.72390HepG2CSTF2
    MAP4K3ENSG00000011566.10858.271401125.68630-0.391302.478101.45630HepG2CSTF2
    SEMA3BENSG00000012171.132341.526901252.910400.902109.999808.16770HepG2CSTF2
    NR1H4ENSG00000012504.9824.67620474.513300.797308.678706.95060HepG2CSTF2
    PGM3ENSG00000013375.11971.672001423.89910-0.551305.513004.07100HepG2CSTF2
    MTMR11ENSG00000014914.1515.8755042.23040-1.411502.513101.48500HepG2CSTF2
    ZMYND11ENSG00000015171.14485.26550677.34340-0.481103.167202.02030HepG2CSTF2
    CHDHENSG00000016391.61720.863401355.186000.344502.409401.40270HepG2CSTF2
    GLT8D1ENSG00000016864.12979.05240714.906500.453503.186002.03600HepG2CSTF2
    AGPSENSG00000018510.81192.152601770.38510-0.570506.230404.71180HepG2CSTF2
    SYT13ENSG00000019505.30.5672024.02230-5.404306.206904.69730HepG2CSTF2
    CD74ENSG00000019582.101365.22720856.539400.672406.278404.75660HepG2CSTF2
    CPS1ENSG00000021826.101123.76290723.005100.636206.830005.25460HepG2CSTF2
    RB1CC1ENSG00000023287.8557.35030896.87580-0.686303.989602.72440HepG2CSTF2
    GCLMENSG00000023909.5173.91720275.40800-0.663203.412202.22780HepG2CSTF2
    DEPDC1ENSG00000024526.12262.78810368.81910-0.489002.441801.42900HepG2CSTF2
    PHF20ENSG00000025293.11753.38240565.776300.413103.322302.15210HepG2CSTF2
    FASENSG00000026103.15448.98340191.182601.2316014.4337012.31500HepG2CSTF2
    RNASET2ENSG00000026297.11558.332201300.91390-1.2203022.5921020.08060HepG2CSTF2
    SARSENSG00000031698.81307.34260817.752100.676807.638405.99080HepG2CSTF2
    GAB2ENSG00000033327.8125.23420194.58770-0.635802.995601.87840HepG2CSTF2
    PEX3ENSG00000034693.10239.12740336.06270-0.491002.440101.42770HepG2CSTF2
    ADSSENSG00000035687.9332.30570483.91510-0.542203.187602.03700HepG2CSTF2
    USP2ENSG00000036672.11414.46760162.931101.3469013.9686011.87990HepG2CSTF2
    VCANENSG00000038427.11562.384002095.19890-1.8975036.2485033.40960HepG2CSTF2
    PHLPP2ENSG00000040199.14224.52900320.57190-0.513702.881001.78390HepG2CSTF2
    AIFM2ENSG00000042286.10878.25020599.044600.551904.230302.92960HepG2CSTF2
    PHKA2ENSG00000044446.7785.843201260.72730-0.681908.787707.05120HepG2CSTF2
    HSPA5ENSG00000044574.712950.2609015942.23880-0.299902.566101.52610HepG2CSTF2
    CPENSG00000047457.93766.2735010999.36240-1.5462019.8460017.47050HepG2CSTF2
    WWC3ENSG00000047644.13169.0295082.005801.043404.726203.36810HepG2CSTF2
    RRM2BENSG00000048392.71887.04690739.530101.3513032.3235029.58160HepG2CSTF2
    KITLGENSG00000049130.9483.48590237.328601.0265010.572508.69530HepG2CSTF2
    H6PDENSG00000049239.8514.31970837.28290-0.703007.456405.81460HepG2CSTF2
    VAMP3ENSG00000049245.81428.288101066.865300.420803.957902.69770HepG2CSTF2
    EPN3ENSG00000049283.1360.0273018.856401.670504.074802.79710HepG2CSTF2
    PPP1R3FENSG00000049769.819.842702.645102.907103.332102.16070HepG2CSTF2
    JKAMPENSG00000050130.13317.15320479.37740-0.596002.711001.64460HepG2CSTF2
    NFE2L3ENSG00000050344.8163.99920253.28430-0.627102.706301.64060HepG2CSTF2
    LIMA1ENSG00000050405.9795.34330466.066800.770908.819107.07930HepG2CSTF2
    FNIP2ENSG00000052795.8345.07630485.78750-0.493402.840101.75200HepG2CSTF2
    LAMA3ENSG00000053747.11133.5220078.247400.770902.872601.77710HepG2CSTF2
    PHPT1ENSG00000054148.13817.95080500.899800.707404.356203.03910HepG2CSTF2
    ENTPD2ENSG00000054179.788.73490197.07560-1.151207.133905.51900HepG2CSTF2
    OPN3ENSG00000054277.8319.84340215.021500.572803.589302.37950HepG2CSTF2
    HHATENSG00000054392.8164.4238094.275400.802403.268902.10610HepG2CSTF2
    PLEKHH1ENSG00000054690.9200.21660306.94020-0.616403.482002.28900HepG2CSTF2
    CYFIP2ENSG00000055163.141308.94660661.159700.9852012.0106010.03770HepG2CSTF2
    TAB2ENSG00000055208.131348.927201034.639400.382603.178302.02960HepG2CSTF2
    PUM2ENSG00000055917.111589.454502002.17530-0.333002.645301.59020HepG2CSTF2
    ITIH4ENSG00000055955.118.3623028.69710-1.778902.420201.41120HepG2CSTF2
    ITIH1ENSG00000055957.643.94120125.21820-1.510807.097405.48820HepG2CSTF2
    DCBLD2ENSG00000057019.111585.850402695.23750-0.765208.235706.54680HepG2CSTF2
    PKP2ENSG00000057294.9650.68110482.533600.431202.925101.82230HepG2CSTF2
    MSH4ENSG00000057468.613.749200.307705.481403.573402.36620HepG2CSTF2
    ATP11BENSG00000058063.11227.08310330.00650-0.539302.933901.82890HepG2CSTF2
    ATP2B4ENSG00000058668.10575.55940427.817400.427902.649401.59340HepG2CSTF2
    TARBP1ENSG00000059588.51046.49530799.641600.388003.158802.01430HepG2CSTF2
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    69 RBPs can affect the gene expression of CSTF2 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    CSTF2ENSG00000101811.9486.00220370.686400.390702.991802.36370HepG2ACO1
    CSTF2ENSG00000101811.91014.76880381.616001.4109019.0147017.74890HepG2AKAP1
    CSTF2ENSG00000101811.9288.00280372.44860-0.371002.181901.49180HepG2AKAP8L
    CSTF2ENSG00000101811.9522.84090631.77260-0.273001.960501.36530HepG2AUH
    CSTF2ENSG00000101811.9249.61200347.78000-0.478502.139901.34580HepG2BCLAF1
    CSTF2ENSG00000101811.9165.79430308.36950-0.895306.424905.31290HepG2CALR
    CSTF2ENSG00000101811.9271.62490370.63060-0.448403.136402.43780HepG2CKAP4
    CSTF2ENSG00000101811.9628.51250259.421201.2765010.497109.03790HepG2CNOT7
    CSTF2ENSG00000101811.9199.08290335.70370-0.753804.558403.69440HepG2CPSF6
    CSTF2ENSG00000101811.965.48890247.20870-1.9164017.5885015.29360HepG2CSTF2
    CSTF2ENSG00000101811.9720.21840527.585100.448904.682203.88510HepG2CELF1
    CSTF2ENSG00000101811.9236.36520338.91500-0.519902.985402.03400HepG2DDX24
    CSTF2ENSG00000101811.9175.00680365.53540-1.062608.071407.05210HepG2DDX3X
    CSTF2ENSG00000101811.9284.19280381.06210-0.423202.238001.35760HepG2DHX30
    CSTF2ENSG00000101811.9205.18420324.81880-0.662702.888102.18620HepG2EIF4B
    CSTF2ENSG00000101811.9308.56670536.09390-0.796906.813105.56200HepG2EIF4G2
    CSTF2ENSG00000101811.9545.38280725.41450-0.411504.135603.42610HepG2ETF1
    CSTF2ENSG00000101811.9166.47400336.28390-1.014403.635202.46490HepG2FTO
    CSTF2ENSG00000101811.9544.94160336.629500.694805.075304.15880HepG2FXR1
    CSTF2ENSG00000101811.9251.08640380.54000-0.599903.142302.46510HepG2GPKOW
    CSTF2ENSG00000101811.9260.45450443.67630-0.768505.781904.80750HepG2HNRNPC
    CSTF2ENSG00000101811.9373.31110587.71490-0.654707.435206.33280HepG2HNRNPF
    CSTF2ENSG00000101811.9184.35840363.15690-0.978107.125206.16880HepG2HNRNPLL
    CSTF2ENSG00000101811.9362.79310578.73250-0.673706.548805.47700HepG2IGF2BP1
    CSTF2ENSG00000101811.9344.35360450.20010-0.386702.928802.17720HepG2ILF2
    CSTF2ENSG00000101811.9460.64970338.618900.443902.052801.50380HepG2MATR3
    CSTF2ENSG00000101811.9239.46390370.38670-0.629202.690901.73750HepG2MTPAP
    CSTF2ENSG00000101811.9227.21510346.58450-0.609103.111502.44240HepG2NCBP2
    CSTF2ENSG00000101811.9424.36400315.155700.429102.894602.27770HepG2PCBP1
    CSTF2ENSG00000101811.9465.17760320.672500.536604.469903.81090HepG2PTBP1
    CSTF2ENSG00000101811.9347.71400536.91650-0.626804.852204.09010HepG2PUF60
    CSTF2ENSG00000101811.9545.02700347.317900.650005.776004.92120HepG2QKI
    CSTF2ENSG00000101811.9396.01400633.09630-0.676905.993805.04450HepG2RPLP0
    CSTF2ENSG00000101811.9210.71160313.87890-0.574902.329501.46200HepG2RPS10
    CSTF2ENSG00000101811.9375.87300514.87880-0.454003.637402.85130HepG2SLBP
    CSTF2ENSG00000101811.9559.74300684.77420-0.290902.238901.77260HepG2SRFBP1
    CSTF2ENSG00000101811.9676.25650348.490700.9564014.2261013.33240HepG2SRSF1
    CSTF2ENSG00000101811.9321.76430577.40660-0.8436011.226909.98780HepG2SRSF7
    CSTF2ENSG00000101811.9765.74740602.910100.344803.632202.93800HepG2SUCLG1
    CSTF2ENSG00000101811.9178.68220353.98230-0.986307.524406.40520HepG2TARDBP
    CSTF2ENSG00000101811.9247.50790428.19750-0.790807.249306.50940HepG2TIAL1
    CSTF2ENSG00000101811.9342.39840432.09550-0.335702.169801.65830HepG2TRIM56
    CSTF2ENSG00000101811.9186.78990352.51670-0.916302.171401.30980HepG2U2AF2
    CSTF2ENSG00000101811.9674.44200340.868800.9844016.0005014.73450HepG2UTP3
    CSTF2ENSG00000101811.9256.54770379.48630-0.564803.018102.32240HepG2ZC3H8
    CSTF2ENSG00000101811.9873.66030678.323100.365002.560001.42900K562AARS
    CSTF2ENSG00000101811.9518.75020848.97520-0.710707.930006.77000K562AKAP8L
    CSTF2ENSG00000101811.9731.49280890.75860-0.284202.248401.43290K562ATP5C1
    CSTF2ENSG00000101811.9637.53380837.37900-0.393404.065102.88490K562BCLAF1
    CSTF2ENSG00000101811.9406.18610556.00070-0.452902.663701.80850K562BOP1
    CSTF2ENSG00000101811.9134.37440635.27670-2.2411044.6160040.95020K562CSTF2
    CSTF2ENSG00000101811.9295.36740444.54410-0.589804.517703.13950K562DDX3X
    CSTF2ENSG00000101811.91239.486701057.568800.228902.094801.51480K562DDX47
    CSTF2ENSG00000101811.9984.612101230.72190-0.321903.283302.51130K562EIF2S2
    CSTF2ENSG00000101811.9638.14870472.399000.433803.545402.65180K562EIF3G
    CSTF2ENSG00000101811.9440.19570601.53410-0.450502.825501.96170K562FMR1
    CSTF2ENSG00000101811.9383.55240509.86720-0.410702.212301.39860K562FTO
    CSTF2ENSG00000101811.9987.49780482.985601.0317021.1815019.61710K562FXR1
    CSTF2ENSG00000101811.9771.06010536.460100.523303.885602.39220K562HNRNPK
    CSTF2ENSG00000101811.91270.58200955.730300.410703.933302.64530K562HNRNPL
    CSTF2ENSG00000101811.9733.64770901.01350-0.296502.068801.36590K562KIF1C
    CSTF2ENSG00000101811.9323.02030481.96990-0.577303.002602.02480K562KRR1
    CSTF2ENSG00000101811.9705.97520564.587200.322302.148501.40390K562MAGOH
    CSTF2ENSG00000101811.9729.236501067.56100-0.549904.741802.60600K562PKM
    CSTF2ENSG00000101811.9940.85770710.702900.404602.745301.99960K562PRPF8
    CSTF2ENSG00000101811.9507.33190665.50650-0.391502.559001.69460K562PSIP1
    CSTF2ENSG00000101811.9903.37560548.554300.719609.586908.40550K562PTBP1
    CSTF2ENSG00000101811.9574.17500820.36540-0.514805.418504.61350K562RBM15
    CSTF2ENSG00000101811.9802.55020525.833700.609905.941204.65010K562RBM22
    CSTF2ENSG00000101811.9383.91750536.82080-0.483602.595101.65450K562SF3B1
    CSTF2ENSG00000101811.91077.71090537.799901.0027017.5133015.75600K562SRSF1
    CSTF2ENSG00000101811.9770.007001086.59670-0.496903.952402.41080K562STAU1
    CSTF2ENSG00000101811.91039.56480742.299500.485805.236304.09810K562SYNCRIP
    CSTF2ENSG00000101811.9521.19240680.00940-0.383702.352801.49190K562TRIM56
    CSTF2ENSG00000101811.9276.23620397.05000-0.523403.612902.69370K562U2AF2
    CSTF2ENSG00000101811.9490.05400728.25180-0.571504.575703.23230K562UCHL5
    CSTF2ENSG00000101811.9728.099901043.29180-0.518907.771106.64230K562UPF1
    CSTF2ENSG00000101811.9793.759501034.06200-0.381503.304601.45660K562UPF2
    CSTF2ENSG00000101811.9675.00100892.72000-0.403302.937102.03570K562WDR3
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    20 alternative splicing events after Knockdown/Knockout CSTF2 protein :

    Only display 100 entries as example. Please click "View All" button to see all 20 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEMYL6ENSG00000092841.14chr12+5655440956554454565540265655410456555170565553710.173000.000000.00000includedHepG2CSTF2
    SEZNF207ENSG00000010244.12chr17+3069368330693776306923483069250630694790306950330.208000.000000.00780includedHepG2CSTF2
    SEAPOC1ENSG00000130208.5chr19+4541792845417990454175034541774645418128454182060.067000.000020.03131includedHepG2CSTF2
    SESEC31AENSG00000138674.12chr4-8378368683783725837788418377891783784470837845450.252000.000000.00048includedHepG2CSTF2
    SEC1GALT1ENSG00000106392.6chr7+7254672725487071965647196830727393372741700.366000.000090.08706includedHepG2CSTF2
    SESNX14ENSG00000135317.8chr6-8624855586248582862465098624664286251702862517610.404000.000000.00000includedHepG2CSTF2
    SEFN1ENSG00000115414.14chr2-2162576532162579262162563542162565372162592502162594810.053000.000000.00756includedHepG2CSTF2
    SECLSTN1ENSG00000171603.12chr1-9797555979761297959429796100980115198013140.217000.000000.00373includedHepG2CSTF2
    SEREV3LENSG00000009413.11chr6-1116861461116862451116850551116851811116864671116865470.157000.000070.07544includedHepG2CSTF2
    SERPS24ENSG00000138326.14chr10+7979996179799983797969517979706279800372798004550.274000.000000.00000includedHepG2CSTF2
    SECPSF4ENSG00000160917.10chr7+9903710999037219990366959903680899042411990424620.199000.000010.00988includedHepG2CSTF2
    SEC6orf48ENSG00000204387.8chr6+318042003180429431803187318032283180501231805212-0.154000.000060.07053excludedHepG2CSTF2
    SECOX20ENSG00000203667.5chr1+245005245245005360244998623244999058245005496245005560-0.192000.000080.08337excludedHepG2CSTF2
    SEBPIFB2ENSG00000078898.6chr20+315960053159618431595405315955663159634631596489-0.182000.000000.00024excludedHepG2CSTF2
    SEEAPPENSG00000129518.4chr14-349985633499868134993902349940133500264935002745-0.067000.000060.06850excludedHepG2CSTF2
    SETFPIENSG00000003436.10chr2-188378342188378373188368374188368497188394090188394212-0.180000.000000.00633excludedHepG2CSTF2
    SERBCK1ENSG00000125826.15chr20+391055391281390473390669398169398263-0.205000.000000.00042excludedHepG2CSTF2
    SEASGR1ENSG00000141505.7chr17-708052870806457080299708039570818127081907-0.068000.000020.03131excludedHepG2CSTF2
    SECPENSG00000047457.9chr3-148891278148891517148883732148883837148894036148894138-0.270000.000000.00000excludedHepG2CSTF2
    SEPLA2G2AENSG00000188257.6chr1-203060722030615220305226203053722030685420306900-0.266000.000000.00780excludedHepG2CSTF2





    2 RBPs can affect the splicing of CSTF2 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SECSTF2ENSG00000101811.9chrX+1000825641000827361000816731000817461000830281000830910.080000.001210.04346includedK562PRPF8
    SECSTF2ENSG00000101811.9chrX+1000825641000827361000816731000817461000830281000830910.082000.000000.00000includedK562AQR

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    No autoregularoty alternative splicing events between protein CSTF2 and its RNA.