RBPMS

General Information

Gene Name       : RBPMS
Gene ID             : ENSG00000157110.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RBPMS)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RBPMSENSG00000157110.150.000.030.01ENCSR000AEF
HepG2RBPMSENSG00000157110.1540.6241.1140.86ENCSR985KAT
K562RBPMSENSG00000157110.150.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RBPMS is not avaliable on ENCORE database.



Proteins bound to RNA
  • RBPMS RNA is bound by 25 proteins.  







eCLIP assay for RBPMS is not avaliable on ENCORE database.





25 proteins are bound to RBPMS RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr83040709230407153+3'-UTR,CDS,intron-Distal,intron-Proximal3.9456210.79705HepG2PTBP1
chr83033231930332373+3'-UTR,5'-UTR,CDS,intron-Proximal4.398694.38106HepG2PPIG
chr83040283430402890+3'-UTR,intron-Distal,intron-Proximal3.620498.71422HepG2QKI
chr83042377030423810+3'-UTR,intron-Proximal3.936914.10134HepG2LARP4
chr83040273930402787+3'-UTR,intron-Distal,intron-Proximal3.780313.12080HepG2XPO5
chr83040218830402331+3'-UTR,CDS,intron-Distal,intron-Proximal4.4636719.04739HepG2QKI
chr83033529430335363+3'-UTR,5'-UTR,CDS,intron-Proximal4.548755.25202HepG2AQR
chr83024239430242468+5'-UTR4.419665.18202HepG2U2AF1
chr83024269930242823+5'-UTR,intron-Distal,intron-Proximal3.605296.55887HepG2XRN2
chr83024215530242262+5'-UTR3.076657.23373HepG2HNRNPK
chr83030011030300220+5'-UTR,intron-Distal3.334685.70060HepG2HNRNPM
chr83024270830242757+5'-UTR,intron-Proximal3.673477.67357HepG2EFTUD2
chr83030022030300320+5'-UTR,intron-Distal,intron-Proximal4.238364.31871HepG2HNRNPM
chr83024269530242782+5'-UTR,intron-Distal,intron-Proximal3.022935.66356HepG2CSTF2T
chr83024235130242428+5'-UTR3.3540615.69390HepG2DDX59
chr83024233930242401+5'-UTR6.0611626.79427HepG2PCBP2
chr83024214030242230+5'-UTR6.4114251.19961HepG2PCBP2
chr83024227330242349+5'-UTR4.0893212.90260HepG2U2AF2
chr83024226330242339+5'-UTR6.5662570.19380HepG2PCBP2
chr83024213930242234+5'-UTR3.0217012.69969HepG2DDX59
chr83024261830242680+CDS,intron-Proximal4.127635.99043HepG2GRWD1
chr83040704830407092+CDS,intron-Distal3.925554.48652HepG2PTBP1
chr83040505030405151+intron-Distal5.2757910.00638HepG2CSTF2
chr83027726330277394+intron-Distal3.405997.17799HepG2HNRNPL
chr83041341430413492+intron-Distal3.706133.07274HepG2SRSF9
chr83027539930275509+intron-Distal3.374973.53952HepG2KHSRP
chr83036673930366808+intron-Distal5.124186.51490HepG2PCBP2
chr83027260630272743+intron-Distal3.820846.33671HepG2HNRNPK
chr83029389630294003+intron-Distal4.6728411.50600HepG2QKI
chr83042392830423990+intron-Distal,intron-Proximal3.738116.22597HepG2EFTUD2
chr83029393130294024+intron-Distal3.282403.44626HepG2PTBP1
chr83038509430385140+intron-Distal3.066483.33412HepG2HNRNPL
chr83027025230270351+intron-Distal3.587953.12105HepG2HNRNPL
chr83028892130289008+intron-Distal6.3938051.96416HepG2PTBP1
chr83025649930256638+intron-Distal3.328949.20162HepG2QKI
chr83031042230310478+intron-Distal5.0248912.90682HepG2SUGP2
chr83031029030310318+intron-Distal4.637164.53347HepG2SUGP2
chr83024874930248806+intron-Distal3.534384.04785HepG2XPO5
chr83029253230292599+intron-Distal3.242264.38902HepG2HNRNPL
chr83031050530310667+intron-Distal3.139499.01665HepG2SUGP2
chr83028934730289365+intron-Distal4.487673.98468HepG2ILF3
chr83029102530291103+intron-Distal4.8126110.81726HepG2QKI
chr83027262930272692+intron-Distal3.606613.97172HepG2QKI
chr83038612830386206+intron-Distal3.499337.16388HepG2HNRNPL
chr83027324030273283+intron-Distal3.558414.28420HepG2HNRNPM
chr83041433330414447+intron-Distal,intron-Proximal5.9825727.20804HepG2PCBP2
chr83031047830310505+intron-Distal4.053543.04224HepG2SUGP2
chr83041433230414435+intron-Distal,intron-Proximal3.497314.84707HepG2HNRNPK
chr83028936530289396+intron-Distal4.533243.98468HepG2ILF3
chr83025623630256307+intron-Distal5.0201316.87745HepG2QKI
chr83033779230337932+intron-Distal4.408634.66899HepG2HNRNPM
chr83026761730267699+intron-Distal4.180549.46623HepG2HNRNPL
chr83031038430310422+intron-Distal4.012976.26907HepG2SUGP2
chr83041420030414255+intron-Distal4.079304.12666HepG2HNRNPK
chr83027276630272822+intron-Distal3.421624.30137HepG2PTBP1
chr83028555430285610+intron-Distal3.876233.15106HepG2HNRNPC
chr83028083930280952+intron-Distal3.834686.15196HepG2HNRNPM
chr83031118630311230+intron-Distal3.008053.95507HepG2SUGP2
chr83027268830272746+intron-Distal4.402704.05003HepG2PCBP2
chr83027270530272772+intron-Distal4.164099.52621HepG2QKI
chr83025324730253308+intron-Distal5.303963.70058HepG2XPO5
chr83035402730354162+intron-Distal5.332857.17216HepG2QKI
chr83031021730310270+intron-Distal3.401295.35016HepG2SUGP2
chr83030894630309010+intron-Distal3.198087.56541HepG2SUGP2
chr83025845930258543+intron-Distal3.943293.30829HepG2CSTF2
chr83029064430290685+intron-Distal3.148713.35103HepG2QKI
chr83041633230416400+intron-Proximal4.054766.24165HepG2SF3B4
chr83042806030428136+intron-Proximal4.263996.86842HepG2U2AF2
chr83041634830416398+intron-Proximal7.5655729.27458HepG2SF3A3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RBPMS is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RBPMS is not available on ENCORE database.

  • 94 RBPs can affect the levels of RBPMS.  








The Knockdown/knockout RNA-Seq assay for RBPMS is not available on ENCORE database.





94 RBPs can affect the gene expression of RBPMS :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RBPMSENSG00000157110.11975.971702440.34400-1.322208.136906.63860HepG2ABCF1
RBPMSENSG00000157110.11467.46210924.22710-0.9834013.0503011.11840HepG2ADAR
RBPMSENSG00000157110.111035.632201807.04740-0.803103.508802.91850HepG2AKAP1
RBPMSENSG00000157110.112347.151503091.32400-0.397302.322901.36420HepG2AKAP8
RBPMSENSG00000157110.111164.955801533.57250-0.396603.615002.75080HepG2AKAP8L
RBPMSENSG00000157110.11955.065401495.03160-0.646502.715201.93770HepG2ASCC1
RBPMSENSG00000157110.112696.588301806.506000.5778014.5621013.20670HepG2AUH
RBPMSENSG00000157110.113239.097101311.127301.3047035.4105033.69430HepG2BOP1
RBPMSENSG00000157110.111561.679401307.217700.256502.209101.51550HepG2CALR
RBPMSENSG00000157110.11615.586701420.43090-1.206305.771504.68020HepG2CIRBP
RBPMSENSG00000157110.11830.773601526.01790-0.8772013.4464012.20950HepG2CKAP4
RBPMSENSG00000157110.112491.229401203.638801.0494020.7881019.12360HepG2CPSF6
RBPMSENSG00000157110.112800.561202008.533000.479503.956302.64330HepG2CPSF7
RBPMSENSG00000157110.111203.00150947.780000.343903.572102.41290HepG2YBX3
RBPMSENSG00000157110.112458.575301386.927800.8258033.8445031.81310HepG2DAZAP1
RBPMSENSG00000157110.11846.249301411.79350-0.738409.864708.47600HepG2DDX19B
RBPMSENSG00000157110.11537.62170701.24500-0.383302.669001.77340HepG2DDX24
RBPMSENSG00000157110.11953.89360681.162700.485702.513201.77140HepG2DDX55
RBPMSENSG00000157110.112450.743501366.836000.842304.506403.26870HepG2DDX59
RBPMSENSG00000157110.111277.24070897.615300.508805.324103.99390HepG2DHX30
RBPMSENSG00000157110.11557.586201460.51130-1.3892021.2189019.76230HepG2DKC1
RBPMSENSG00000157110.111398.73940930.657000.587709.840608.57860HepG2DNAJC21
RBPMSENSG00000157110.111546.39130922.427200.7453015.5781014.15630HepG2DNAJC2
RBPMSENSG00000157110.11689.66150952.60360-0.466003.474702.44780HepG2EEF2
RBPMSENSG00000157110.111043.93180659.830100.661805.252803.72800HepG2AGO1
RBPMSENSG00000157110.112172.849301429.181000.604304.951404.17040HepG2EIF2S1
RBPMSENSG00000157110.111122.33390773.264800.537404.640803.49310HepG2EIF3D
RBPMSENSG00000157110.11466.25900676.55520-0.537104.700903.33630HepG2EIF3G
RBPMSENSG00000157110.11943.054101579.05290-0.743603.313302.61480HepG2EIF4A3
RBPMSENSG00000157110.112158.180301310.803500.719304.065303.09120HepG2EIF4G2
RBPMSENSG00000157110.111294.533702113.22440-0.707004.606403.23400HepG2ESF1
RBPMSENSG00000157110.111076.28960691.180100.638808.626806.54440HepG2FAM120A
RBPMSENSG00000157110.111198.08080682.658200.8114012.2030010.09570HepG2FASTKD2
RBPMSENSG00000157110.111060.019401594.28800-0.588802.135601.52420HepG2FXR1
RBPMSENSG00000157110.11902.124901570.22050-0.799603.126602.18030HepG2G3BP2
RBPMSENSG00000157110.11508.08170688.48140-0.438402.643301.76840HepG2GEMIN5
RBPMSENSG00000157110.11751.846801364.28830-0.859606.656205.69180HepG2GPKOW
RBPMSENSG00000157110.112099.653801457.330800.526708.252206.67420HepG2HDGF
RBPMSENSG00000157110.11488.83660939.57290-0.9427013.0312011.79980HepG2HNRNPA1
RBPMSENSG00000157110.111598.443801297.464500.300903.215502.44690HepG2HNRNPF
RBPMSENSG00000157110.111001.652301498.31450-0.581002.166501.54300HepG2HNRNPK
RBPMSENSG00000157110.112017.844101301.977200.632007.340306.37280HepG2HNRNPLL
RBPMSENSG00000157110.11736.089501038.18790-0.496107.369906.41760HepG2HNRNPU
RBPMSENSG00000157110.112228.086103364.93160-0.594804.797203.19270HepG2HSPD1
RBPMSENSG00000157110.111582.976001060.475300.577805.531804.52600HepG2ILF2
RBPMSENSG00000157110.111008.093401511.65910-0.584502.335701.42660HepG2KHSRP
RBPMSENSG00000157110.111872.153903362.76850-0.845003.780802.30910HepG2KRR1
RBPMSENSG00000157110.111432.210702004.03700-0.484703.038502.16460HepG2LARP4
RBPMSENSG00000157110.11878.481501594.84940-0.860303.784203.01740HepG2MAGOH
RBPMSENSG00000157110.11782.990401603.59830-1.034204.965404.14160HepG2MATR3
RBPMSENSG00000157110.11767.320301641.22800-1.096905.336204.47150HepG2NCBP2
RBPMSENSG00000157110.111409.39740882.486000.675304.437902.63500HepG2NOLC1
RBPMSENSG00000157110.111074.739301561.36400-0.538809.827408.79740HepG2PCBP1
RBPMSENSG00000157110.11537.47060816.48650-0.603203.601502.42390HepG2PCBP2
RBPMSENSG00000157110.111149.53200925.981400.311903.001802.23780HepG2PPIL4
RBPMSENSG00000157110.111306.012301663.68490-0.349204.624003.65160HepG2PRPF4
RBPMSENSG00000157110.11583.16310858.31640-0.557603.067201.79310HepG2PRPF6
RBPMSENSG00000157110.111168.084701588.79010-0.443806.553805.78150HepG2PTBP1
RBPMSENSG00000157110.111053.347001312.85430-0.317702.388901.82920HepG2PUF60
RBPMSENSG00000157110.111156.393301393.68650-0.269303.272002.63820HepG2PUM1
RBPMSENSG00000157110.111029.925501392.64750-0.435304.761803.89370HepG2PUM2
RBPMSENSG00000157110.111028.868501554.94630-0.595807.026106.12240HepG2PUS1
RBPMSENSG00000157110.112450.675301720.605500.510206.968306.04210HepG2QKI
RBPMSENSG00000157110.113455.139202682.166200.365204.818903.72510HepG2RBM15
RBPMSENSG00000157110.111875.741701561.595400.264302.203001.59560HepG2RBM25
RBPMSENSG00000157110.11549.51040742.41820-0.434102.343901.37150HepG2RCC2
RBPMSENSG00000157110.11833.765401768.13440-1.0845033.9110032.47260HepG2NELFE
RBPMSENSG00000157110.11852.249001646.84290-0.9504026.8174025.24890HepG2RECQL
RBPMSENSG00000157110.11496.99870774.02200-0.639103.772402.67050HepG2RPS10
RBPMSENSG00000157110.111125.290101830.74830-0.702103.127602.27830HepG2RPS3A
RBPMSENSG00000157110.11716.16320519.508000.463002.268101.54890HepG2RRP9
RBPMSENSG00000157110.111760.15020924.554600.9288031.4980029.66550HepG2SAFB2
RBPMSENSG00000157110.111354.139901958.91030-0.532703.578402.80860HepG2SF3A3
RBPMSENSG00000157110.111437.252801258.891800.191102.067001.44430HepG2SLBP
RBPMSENSG00000157110.111615.69380848.059200.929803.052201.65720HepG2SNRNP200
RBPMSENSG00000157110.112967.878001957.996000.6000018.1664017.18130HepG2SRFBP1
RBPMSENSG00000157110.11930.034701726.50940-0.8925025.4320024.31420HepG2SRSF1
RBPMSENSG00000157110.11994.236201296.29280-0.382704.706803.92680HepG2SRSF5
RBPMSENSG00000157110.111633.960801274.764400.358004.514403.65840HepG2SRSF7
RBPMSENSG00000157110.111080.091101404.63500-0.379005.365104.64100HepG2SRSF9
RBPMSENSG00000157110.11390.583601700.02400-2.12190111.04140109.06660HepG2SSB
RBPMSENSG00000157110.112221.313003353.75460-0.594404.462302.86460HepG2SSRP1
RBPMSENSG00000157110.111257.132401474.20740-0.229802.364601.78120HepG2SUCLG1
RBPMSENSG00000157110.111253.173101551.94300-0.308503.103802.51480HepG2TAF15
RBPMSENSG00000157110.111681.775801269.369600.405803.506902.70170HepG2TARDBP
RBPMSENSG00000157110.111177.670003294.10690-1.4840011.902609.88220HepG2TBRG4
RBPMSENSG00000157110.111984.704501425.929800.476906.496305.22160HepG2TIA1
RBPMSENSG00000157110.11610.080901008.80820-0.7256010.690609.81830HepG2TIAL1
RBPMSENSG00000157110.111241.558901017.810500.286603.248002.64820HepG2TRIM56
RBPMSENSG00000157110.11412.60480614.42550-0.574503.667401.87390HepG2TROVE2
RBPMSENSG00000157110.11948.407001282.65810-0.435604.254503.14350HepG2TUFM
RBPMSENSG00000157110.112130.37390988.035401.108403.895402.71300HepG2U2AF2
RBPMSENSG00000157110.11483.81380667.43030-0.464203.429002.62660HepG2XRN2
RBPMSENSG00000157110.111148.359901641.80680-0.5157010.881109.69740HepG2ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RBPMS is not available on ENCORE database.





8 RBPs can affect the splicing of RBPMS :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERBPMSENSG00000157110.11chr8+3040268030402737304020103040214130404808304050340.078000.000010.00193includedHepG2RBM22
SERBPMSENSG00000157110.11chr8+304237733042387730416403304164733042815330429734-0.236000.000000.00000excludedHepG2HNRNPK
SERBPMSENSG00000157110.11chr8+3040268030402737304020103040214130404808304050340.080000.000050.00107includedHepG2U2AF2
SERBPMSENSG00000157110.11chr8+3042189430421969304164033041647330423773304238770.073000.000100.00714includedHepG2MATR3
SERBPMSENSG00000157110.11chr8+3040701630407102304020103040214130416403304164730.073000.000500.05868includedHepG2SSB
SERBPMSENSG00000157110.11chr8+3040268030402737304020103040214130404808304050340.115000.000390.03350includedHepG2IGF2BP3
RIRBPMSENSG00000157110.11chr8+3040201030403108304020103040214130402877304031080.058000.011670.08929includedHepG2U2AF1
MXERBPMSENSG00000157110.11chr8+30402010304021413042377330423877303618023036195330428153304297730.107000.000020.001141includedHepG2DDX55
MXERBPMSENSG00000157110.11chr8+30407016304071023041640330416473304020103040214130423773304238770.070000.000290.034511includedHepG2SSB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RBPMS is not avaliable on ENCORE database.