CPS1

General Information

Gene Name : CPS1
Gene ID : ENSG00000021826.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CPS1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CPS1	ENSG00000021826.15	0.37	0.43	0.40	ENCSR000AEF
HepG2	CPS1	ENSG00000021826.15	26.52	38.55	32.53	ENCSR985KAT
K562	CPS1	ENSG00000021826.15	6.30	6.26	6.28	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CPS1 is not avaliable on ENCORE database.

Proteins bound to RNA

CPS1 RNA is bound by 7 proteins.

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eCLIP assay for CPS1 is not avaliable on ENCORE database.

7 proteins are bound to CPS1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	211343657	211343756	+	intron-Distal	5.93485	12.71401	HepG2	PCBP2
chr2	211471452	211471499	+	CDS,intron-Proximal	5.13647	7.86385	HepG2	LIN28B
chr2	211469941	211469971	+	CDS,intron-Proximal	4.90791	6.96848	HepG2	LIN28B
chr2	211465277	211465363	+	CDS,intron-Proximal	3.66911	6.39464	HepG2	BCLAF1
chr2	211455524	211455631	+	CDS,intron-Proximal	4.17384	6.22576	HepG2	BCLAF1
chr2	211360662	211360755	+	intron-Distal	4.73892	6.17200	HepG2	PCBP2
chr2	211342708	211342837	+	intron-Distal	3.75780	5.09669	HepG2	QKI
chr2	211469828	211469925	+	CDS	4.48500	4.96722	HepG2	G3BP1
chr2	211421547	211421584	+	CDS,intron-Proximal	4.52688	4.70478	HepG2	BCLAF1
chr2	211460220	211460298	+	5'-UTR,CDS	3.71507	4.46864	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 17 entries

eCLIP assay for CPS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CPS1 is not available on ENCORE database.
120 RBPs can affect the levels of CPS1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CPS1 is not available on ENCORE database.

120 RBPs can affect the gene expression of CPS1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CPS1	ENSG00000021826.10	373.48760	1359.39160	-1.86380	43.77060	41.20720	HepG2	U2AF1
CPS1	ENSG00000021826.10	775.20710	1560.06510	-1.00900	37.04800	35.64140	HepG2	ZNF622
CPS1	ENSG00000021826.10	897.78250	1633.82290	-0.86380	20.86010	19.42830	HepG2	CELF1
CPS1	ENSG00000021826.10	1100.51100	1765.18060	-0.68160	19.19960	17.92220	HepG2	PUM1
CPS1	ENSG00000021826.10	500.91760	1073.07340	-1.09910	20.12070	17.84950	HepG2	SUPT6H
CPS1	ENSG00000021826.10	933.36120	1772.38880	-0.92520	18.57120	16.92900	HepG2	RBM25
CPS1	ENSG00000021826.10	216.21400	735.91370	-1.76710	18.26840	15.97490	HepG2	PABPC1
CPS1	ENSG00000021826.10	1175.66430	1877.37180	-0.67520	16.04420	14.79960	HepG2	SF3B4
CPS1	ENSG00000021826.10	1132.27210	1772.11640	-0.64630	14.82750	13.60310	HepG2	PCBP1
CPS1	ENSG00000021826.10	622.43950	1322.30520	-1.08700	13.48530	12.17330	HepG2	GPKOW
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 135 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CPS1 is not available on ENCORE database.

3 RBPs can affect the splicing of CPS1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A5SS	CPS1	ENSG00000021826.10	chr2	+	211384274	211384508	211384274	211384394	211421442	211421583	0.37300	0.00032	0.07553	longer	K562	FXR2
SE	CPS1	ENSG00000021826.10	chr2	+	211414617	211414745	211384274	211384394	211421442	211421583	0.22300	0.00130	0.03149	included	HepG2	SRSF1
SE	CPS1	ENSG00000021826.10	chr2	+	211384274	211384394	211342405	211342490	211421442	211421583	-0.19400	0.00197	0.03606	excluded	HepG2	U2AF1
SE	CPS1	ENSG00000021826.10	chr2	+	211497190	211497285	211481146	211481265	211502425	211502567	0.13400	0.00229	0.04065	included	HepG2	U2AF1

Showing 1 to 4 of 4 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CPS1

General Information

Functions

Localization

Domains (AlphaFold: CPS1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CPS1 is not avaliable on ENCORE database.

7 proteins are bound to CPS1 RNA:

eCLIP assay for CPS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CPS1 is not available on ENCORE database.

120 RBPs can affect the gene expression of CPS1 :

The Knockdown/knockout RNA-Seq assay for CPS1 is not available on ENCORE database.

3 RBPs can affect the splicing of CPS1 :

The Knockdown/knockout RNA-Seq assay for CPS1 is not avaliable on ENCORE database.