PHF20

General Information

Gene Name : PHF20
Gene ID : ENSG00000025293.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PHF20)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PHF20	ENSG00000025293.16	32.80	33.03	32.91	ENCSR000AEF
HepG2	PHF20	ENSG00000025293.16	21.28	37.63	29.46	ENCSR985KAT
K562	PHF20	ENSG00000025293.16	54.19	47.57	50.88	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PHF20 is not avaliable on ENCORE database.

Proteins bound to RNA

PHF20 RNA is bound by 27 proteins.

CanvasJS.com

eCLIP assay for PHF20 is not avaliable on ENCORE database.

27 proteins are bound to PHF20 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr20	34361568	34361674	+	intron-Distal	3.84674	23.70045	HepG2	SUGP2
chr20	34361561	34361654	+	intron-Distal	6.27575	20.32355	HepG2	MATR3
chr20	34380433	34380514	+	intron-Distal	4.48106	18.25090	HepG2	PTBP1
chr20	34360279	34360367	+	intron-Distal	4.24898	17.15613	HepG2	SUGP2
chr20	34396170	34396218	+	intron-Distal	3.95453	15.72129	HepG2	PTBP1
chr20	34362386	34362451	+	intron-Distal	5.76946	14.88661	HepG2	SUGP2
chr20	34380448	34380510	+	intron-Distal	6.13901	14.59132	K562	PTBP1
chr20	34455717	34455820	+	intron-Distal	5.52460	14.54239	K562	PTBP1
chr20	34455727	34455834	+	intron-Distal	4.64617	13.30393	HepG2	PTBP1
chr20	34361249	34361310	+	intron-Distal	4.44625	13.16512	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 103 entries

eCLIP assay for PHF20 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PHF20 is not available on ENCORE database.
97 RBPs can affect the levels of PHF20.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PHF20 is not available on ENCORE database.

97 RBPs can affect the gene expression of PHF20 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PHF20	ENSG00000025293.11	456.79270	1250.20930	-1.45260	36.50730	33.33300	K562	MATR3
PHF20	ENSG00000025293.11	416.97600	1085.13840	-1.37980	33.15430	31.76990	HepG2	TIAL1
PHF20	ENSG00000025293.11	475.84790	1325.37880	-1.47780	24.52170	22.80060	HepG2	MATR3
PHF20	ENSG00000025293.11	745.53110	1269.85190	-0.76830	19.68030	18.03580	HepG2	HNRNPL
PHF20	ENSG00000025293.11	360.10040	846.91090	-1.23380	17.14680	15.76960	HepG2	HNRNPLL
PHF20	ENSG00000025293.11	718.33030	1183.02450	-0.71980	14.24860	13.19650	HepG2	PTBP1
PHF20	ENSG00000025293.11	574.76500	964.34270	-0.74660	14.09200	12.74680	HepG2	UPF1
PHF20	ENSG00000025293.11	525.37760	928.78600	-0.82200	12.38780	10.67260	K562	U2AF2
PHF20	ENSG00000025293.11	406.18150	774.44160	-0.93100	12.65460	10.52560	K562	RCC2
PHF20	ENSG00000025293.11	971.87920	1400.60400	-0.52720	11.32290	10.29320	HepG2	PUM1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 115 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PHF20 is not available on ENCORE database.

13 RBPs can affect the splicing of PHF20 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	PHF20	ENSG00000025293.11	chr20	+	34435271	34435356	34450934	34451322	34430494	34430666	34457359	34457473	-0.19600	0.00000	0.00082	2included	K562	LARP4
SE	PHF20	ENSG00000025293.11	chr20	+	34388015	34388095			34359947	34360001	34389412	34389527	0.07400	0.00001	0.00189	included	HepG2	NCBP2
SE	PHF20	ENSG00000025293.11	chr20	+	34370249	34370531			34359947	34360001	34389412	34389527	0.08400	0.00009	0.00179	included	HepG2	U2AF2
SE	PHF20	ENSG00000025293.11	chr20	+	34400544	34400641			34389412	34389527	34430494	34430666	0.15100	0.00011	0.02264	included	K562	HNRNPM
SE	PHF20	ENSG00000025293.11	chr20	+	34388015	34388095			34359947	34360001	34389412	34389527	0.10800	0.00027	0.01342	included	K562	TARDBP
SE	PHF20	ENSG00000025293.11	chr20	+	34370249	34370531			34359947	34360001	34389412	34389527	0.07000	0.00041	0.00572	included	K562	AQR
MXE	PHF20	ENSG00000025293.11	chr20	+	34457359	34457473	34458876	34459056	34450934	34451322	34459571	34459751	-0.28200	0.00077	0.08685	2included	HepG2	HNRNPA1
SE	PHF20	ENSG00000025293.11	chr20	+	34487291	34487570			34459571	34459751	34501170	34501238	0.24500	0.00132	0.07842	included	K562	HNRNPUL1
MXE	PHF20	ENSG00000025293.11	chr20	+	34446223	34446303	34450934	34451322	34435271	34435356	34457359	34457473	0.52500	0.00149	0.05972	1included	HepG2	DROSHA
SE	PHF20	ENSG00000025293.11	chr20	+	34433306	34433430			34430494	34430666	34435271	34435352	0.10400	0.00220	0.03683	included	K562	HNRNPC

Showing 1 to 10 of 16 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PHF20

General Information

Functions

Localization

Domains (AlphaFold: PHF20)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PHF20 is not avaliable on ENCORE database.

27 proteins are bound to PHF20 RNA:

eCLIP assay for PHF20 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PHF20 is not available on ENCORE database.

97 RBPs can affect the gene expression of PHF20 :

The Knockdown/knockout RNA-Seq assay for PHF20 is not available on ENCORE database.

13 RBPs can affect the splicing of PHF20 :

The Knockdown/knockout RNA-Seq assay for PHF20 is not avaliable on ENCORE database.