WDR54

General Information

Gene Name       : WDR54
Gene ID             : ENSG00000005448.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: WDR54)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878WDR54ENSG00000005448.1614.1029.2621.68ENCSR000AEF
HepG2WDR54ENSG00000005448.167.985.556.77ENCSR985KAT
K562WDR54ENSG00000005448.164.584.324.45ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for WDR54 is not avaliable on ENCORE database.



Proteins bound to RNA
  • WDR54 RNA is bound by 1 proteins.  







eCLIP assay for WDR54 is not avaliable on ENCORE database.





1 proteins are bound to WDR54 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr27465101174651088+CDS4.473576.10169K562LIN28B
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for WDR54 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for WDR54 is not available on ENCORE database.

  • 127 RBPs can affect the levels of WDR54.  








The Knockdown/knockout RNA-Seq assay for WDR54 is not available on ENCORE database.





127 RBPs can affect the gene expression of WDR54 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
WDR54ENSG00000005448.1280.22350178.90880-1.157104.691202.50940HepG2AARS
WDR54ENSG00000005448.1252.03690180.77610-1.796603.625002.55140HepG2ABCF1
WDR54ENSG00000005448.12683.61320247.145101.4677016.8531015.65160HepG2AKAP1
WDR54ENSG00000005448.12143.1499062.546201.194405.011903.62230HepG2AKAP8
WDR54ENSG00000005448.12149.70720232.44320-0.634702.293001.58790HepG2AKAP8L
WDR54ENSG00000005448.12140.16770204.48410-0.544801.974001.30750HepG2ASCC1
WDR54ENSG00000005448.1268.58490162.91880-1.248203.615102.01820HepG2ATP5C1
WDR54ENSG00000005448.1263.63000158.61410-1.317706.133604.85610HepG2BCLAF1
WDR54ENSG00000005448.1277.17350155.71740-1.012804.625503.65870HepG2CALR
WDR54ENSG00000005448.12526.69640246.177001.097209.095307.33630HepG2CCAR1
WDR54ENSG00000005448.1234.84690194.27650-2.4790018.4397016.65550HepG2CIRBP
WDR54ENSG00000005448.1291.99680231.29570-1.3301011.5920010.41910HepG2CKAP4
WDR54ENSG00000005448.12229.9645093.146701.303706.414905.24950HepG2CNOT7
WDR54ENSG00000005448.12144.67110221.48420-0.614403.130302.04610HepG2YBX3
WDR54ENSG00000005448.1254.07650112.75860-1.060203.753902.51980HepG2CSTF2
WDR54ENSG00000005448.12241.50380397.89540-0.720303.975303.11240HepG2DAZAP1
WDR54ENSG00000005448.12128.24850213.98960-0.738604.855303.79080HepG2DDX19B
WDR54ENSG00000005448.12128.78220255.39340-0.987803.223802.49570HepG2DDX21
WDR54ENSG00000005448.1294.19230250.32810-1.410104.991903.75800HepG2DDX24
WDR54ENSG00000005448.1274.61430167.92870-1.170304.482102.89600HepG2DDX27
WDR54ENSG00000005448.12120.23500236.72980-0.977405.326404.48360HepG2DDX3X
WDR54ENSG00000005448.12618.90380203.394701.6053019.7434018.29320HepG2DDX6
WDR54ENSG00000005448.12118.22350209.77180-0.827304.393603.16920HepG2DHX30
WDR54ENSG00000005448.1246.28550221.37700-2.2579022.0007020.52510HepG2DKC1
WDR54ENSG00000005448.1290.16290217.25010-1.268804.668203.49740HepG2EEF2
WDR54ENSG00000005448.1255.90630137.02210-1.293303.762602.40120HepG2EIF2S2
WDR54ENSG00000005448.1266.21030176.32090-1.413104.582303.44080HepG2EIF3D
WDR54ENSG00000005448.12123.82440241.44860-0.963402.861701.76360HepG2EIF3G
WDR54ENSG00000005448.1223.66490216.02030-3.1903028.6467026.62210HepG2EIF4A3
WDR54ENSG00000005448.1294.00590210.36180-1.162105.399204.46050HepG2EIF4B
WDR54ENSG00000005448.12192.41260392.66860-1.029105.721104.59260HepG2EIF4G1
WDR54ENSG00000005448.12229.81430376.12980-0.710803.221102.34570HepG2EIF4G2
WDR54ENSG00000005448.1264.88240156.50210-1.270303.199602.02730HepG2ESF1
WDR54ENSG00000005448.1270.85670363.89770-2.3606037.8643036.11350HepG2ETF1
WDR54ENSG00000005448.1291.81950226.07170-1.299906.655805.36360HepG2EWSR1
WDR54ENSG00000005448.12377.37910157.661801.2591013.8833011.33310HepG2FAM120A
WDR54ENSG00000005448.12335.17470202.208400.729002.164601.57320HepG2G3BP1
WDR54ENSG00000005448.1283.02190214.70900-1.370808.620007.03390HepG2G3BP2
WDR54ENSG00000005448.1284.30580156.97980-0.896903.371102.37080HepG2GEMIN5
WDR54ENSG00000005448.1250.30590219.58300-2.1260016.4719015.10740HepG2HNRNPA1
WDR54ENSG00000005448.12244.81450365.74470-0.579102.459801.57120HepG2HNRNPA2B1
WDR54ENSG00000005448.1269.29180244.23650-1.8175014.5152013.05200HepG2HNRNPC
WDR54ENSG00000005448.1222.2331053.12160-1.256602.415001.82120HepG2HNRNPLL
WDR54ENSG00000005448.1231.9665068.10220-1.091102.516301.34800HepG2HSPD1
WDR54ENSG00000005448.1236.5442070.37870-0.945502.078401.44520HepG2IGF2BP1
WDR54ENSG00000005448.1265.16180205.52980-1.6572011.109209.85200HepG2IGF2BP2
WDR54ENSG00000005448.12120.32040206.74770-0.781003.048501.98830HepG2KHSRP
WDR54ENSG00000005448.12354.89260211.496600.746606.911005.34810HepG2KIF1C
WDR54ENSG00000005448.1292.63200260.12510-1.489606.648305.34680HepG2LARP4
WDR54ENSG00000005448.1232.18100218.08840-2.7606023.8243022.01870HepG2MAGOH
WDR54ENSG00000005448.12381.97900219.299800.800504.817304.00280HepG2MATR3
WDR54ENSG00000005448.1260.74030147.57460-1.280703.848802.89830HepG2MSI2
WDR54ENSG00000005448.12124.27310224.45810-0.852904.138903.36910HepG2NCBP2
WDR54ENSG00000005448.1257.67630164.78210-1.514506.149604.47910HepG2NONO
WDR54ENSG00000005448.1276.87160199.86020-1.378508.486907.23770HepG2PABPC4
WDR54ENSG00000005448.1258.84130205.60370-1.805009.467408.45330HepG2PCBP1
WDR54ENSG00000005448.1293.95510205.84580-1.131504.355303.07210HepG2PCBP2
WDR54ENSG00000005448.12328.13860220.032200.576503.254401.38330HepG2PES1
WDR54ENSG00000005448.12126.36350216.40130-0.776104.619203.69060HepG2PPIL4
WDR54ENSG00000005448.1273.69060119.66080-0.699402.480601.74380HepG2PRPF4
WDR54ENSG00000005448.1231.54220138.46030-2.1341011.073809.60710HepG2PRPF8
WDR54ENSG00000005448.12124.24920209.23830-0.751903.082702.51080HepG2PTBP1
WDR54ENSG00000005448.12144.19100376.68050-1.385408.376907.41500HepG2PUF60
WDR54ENSG00000005448.12100.75200399.90840-1.9889014.6730013.53390HepG2PUM1
WDR54ENSG00000005448.12206.12010399.58810-0.955003.485002.73630HepG2PUM2
WDR54ENSG00000005448.12119.99320235.69280-0.974007.435706.50770HepG2PUS1
WDR54ENSG00000005448.1248.73670198.55380-2.026409.422008.17470HepG2RAVER1
WDR54ENSG00000005448.12363.22340186.044400.965108.908407.48760HepG2RBM15
WDR54ENSG00000005448.12186.60690304.14440-0.704804.851404.21390HepG2RBM22
WDR54ENSG00000005448.1245.91450205.63080-2.1630012.6905011.30850HepG2RBM25
WDR54ENSG00000005448.12187.57570281.92930-0.587902.505701.56570HepG2RBM27
WDR54ENSG00000005448.1293.34870228.93830-1.294306.500304.86870HepG2RCC2
WDR54ENSG00000005448.12343.49150232.838200.560803.695003.08740HepG2NELFE
WDR54ENSG00000005448.1260.71270195.20860-1.684906.560905.15450HepG2RPS10
WDR54ENSG00000005448.1239.61440171.60550-2.115008.685607.66970HepG2RPS19
WDR54ENSG00000005448.12103.06740260.02690-1.335109.444308.04010HepG2RPS2
WDR54ENSG00000005448.1224.07090136.96750-2.5085013.1682011.66660HepG2RRP9
WDR54ENSG00000005448.12117.21510216.23940-0.883503.165401.53420HepG2RTF1
WDR54ENSG00000005448.1260.61660172.17350-1.506105.463604.15440HepG2SERBP1
WDR54ENSG00000005448.1221.96420113.20470-2.3657012.0760010.61040HepG2SF3A3
WDR54ENSG00000005448.1215.3045052.57650-1.780503.926903.09810HepG2SF3B1
WDR54ENSG00000005448.1290.63480217.79240-1.264806.582205.73210HepG2SF3B4
WDR54ENSG00000005448.12121.97180251.98450-1.046808.773407.72950HepG2SMN1
WDR54ENSG00000005448.12100.87140343.50790-1.7678023.5999022.51030HepG2SRFBP1
WDR54ENSG00000005448.1239.58680227.34920-2.5218014.9029013.99300HepG2SRSF1
WDR54ENSG00000005448.12111.02640371.97150-1.7443012.4224011.22560HepG2SRSF5
WDR54ENSG00000005448.12126.35450184.97890-0.549901.921001.44500HepG2SRSF9
WDR54ENSG00000005448.1222.51020298.22530-3.7278054.8149053.24850HepG2SSB
WDR54ENSG00000005448.1249.12350178.66100-1.8627010.474509.29770HepG2SUPV3L1
WDR54ENSG00000005448.12399.38450204.408800.966209.917608.96070HepG2TAF15
WDR54ENSG00000005448.1227.2625066.64740-1.289602.799101.72590HepG2TBRG4
WDR54ENSG00000005448.1243.04880119.75310-1.476005.453104.12100HepG2TFIP11
WDR54ENSG00000005448.1233.34420235.78670-2.8220030.8500029.50720HepG2TIAL1
WDR54ENSG00000005448.12140.62770368.07500-1.388108.079706.45890HepG2TUFM
WDR54ENSG00000005448.1217.83010156.04720-3.129609.497208.31970HepG2U2AF1
WDR54ENSG00000005448.12220.49280389.65030-0.821403.062902.18430HepG2UBE2L3
WDR54ENSG00000005448.1238.94450105.54380-1.438405.739104.63630HepG2UCHL5
WDR54ENSG00000005448.1265.70050118.08600-0.845903.199602.48670HepG2ZC3H8
WDR54ENSG00000005448.1250.90240110.41580-1.117104.843504.17130HepG2ZNF622
WDR54ENSG00000005448.12108.72410198.53630-0.868702.870101.54750HepG2ZRANB2
WDR54ENSG00000005448.12420.21210182.058001.2066016.0451014.79390K562AGGF1
WDR54ENSG00000005448.12303.16270160.591700.916608.363105.76430K562AKAP1
WDR54ENSG00000005448.12346.36750189.449600.870403.693202.93480K562AKAP8L
WDR54ENSG00000005448.12160.21080244.24300-0.608301.904601.40090K562AQR
WDR54ENSG00000005448.12235.96000132.533600.832104.979903.12730K562BCCIP
WDR54ENSG00000005448.12211.95570128.082200.726603.794302.66040K562BCLAF1
WDR54ENSG00000005448.12187.24250125.447800.577702.302901.30330K562CPEB4
WDR54ENSG00000005448.12170.9541097.169500.814903.540702.32300K562CSTF2
WDR54ENSG00000005448.1224.1710085.45020-1.821804.829603.46030K562EIF3A
WDR54ENSG00000005448.1248.46280127.99720-1.401204.491303.13620K562EIF3D
WDR54ENSG00000005448.1274.95710170.00640-1.181506.661105.39740K562EIF4A3
WDR54ENSG00000005448.12151.8726072.710001.062503.892002.87560K562FIP1L1
WDR54ENSG00000005448.1234.75830176.79980-2.3467018.9739017.50200K562FXR1
WDR54ENSG00000005448.1225.4666094.06170-1.885005.957804.83340K562G3BP2
WDR54ENSG00000005448.12258.39580166.245300.636202.161101.48780K562GRSF1
WDR54ENSG00000005448.12403.35560194.987901.0486011.447509.65810K562HNRNPU
WDR54ENSG00000005448.12368.37320156.319801.236609.913707.54390K562IGF2BP2
WDR54ENSG00000005448.12329.02380201.018500.710804.492603.40280K562KIF1C
WDR54ENSG00000005448.1276.75140164.27580-1.097906.204004.92370K562MAGOH
WDR54ENSG00000005448.12238.72880163.941000.542102.660201.75600K562MATR3
WDR54ENSG00000005448.12319.14170225.196300.502902.506401.64900K562MBNL1
WDR54ENSG00000005448.12255.9530091.968601.476603.908902.67740K562PABPN1
WDR54ENSG00000005448.12300.40790138.939501.112407.659906.27600K562PCBP3
WDR54ENSG00000005448.12304.15180192.941900.656503.231801.53740K562PKM
WDR54ENSG00000005448.12169.34060106.577400.667902.728001.93300K562POLR2G
WDR54ENSG00000005448.12159.2877082.571900.947802.984702.12770K562PPIG
WDR54ENSG00000005448.12262.63440109.257801.265203.850902.03200K562PPP1R8
WDR54ENSG00000005448.12278.78190154.738800.849203.545801.41760K562PRPF6
WDR54ENSG00000005448.1228.65830116.39390-2.022007.226706.01740K562PRPF8
WDR54ENSG00000005448.12195.0275095.384101.031805.332704.02220K562PSIP1
WDR54ENSG00000005448.1262.16830159.60500-1.360308.610107.48170K562PTBP1
WDR54ENSG00000005448.12311.94970187.810900.731902.090301.60570K562PUS1
WDR54ENSG00000005448.12306.72990183.052300.744605.214304.42330K562RBM15
WDR54ENSG00000005448.12248.00900161.047800.622803.120701.95370K562NELFE
WDR54ENSG00000005448.1226.2177094.94400-1.856507.198705.46860K562SAFB
WDR54ENSG00000005448.12317.05410102.406901.630304.657602.78150K562SFPQ
WDR54ENSG00000005448.12134.5118082.550100.704302.279001.36900K562SRFBP1
WDR54ENSG00000005448.1275.75550156.46720-1.046405.075204.12080K562SRSF1
WDR54ENSG00000005448.12268.71040115.511601.217902.704301.30220K562SUPT6H
WDR54ENSG00000005448.1241.14640106.89150-1.377305.836104.63540K562SYNCRIP
WDR54ENSG00000005448.1242.2302092.32150-1.128403.088501.51570K562TAF15
WDR54ENSG00000005448.12232.52040158.352600.554102.488601.81510K562TARDBP
WDR54ENSG00000005448.12167.0119097.526600.776003.115902.09930K562TRIM56
WDR54ENSG00000005448.12425.43130190.492601.159104.240202.51730K562UTP18
WDR54ENSG00000005448.12190.95240118.068400.693502.768501.56640K562UTP3
WDR54ENSG00000005448.12422.18240289.539500.544003.371201.93760K562WRN
WDR54ENSG00000005448.12378.14430275.070900.459002.533701.71510K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for WDR54 is not available on ENCORE database.





2 RBPs can affect the splicing of WDR54 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEWDR54ENSG00000005448.12chr2+7465060474650658746504457465051274650981746511090.120000.000120.01187includedHepG2AKAP1
SEWDR54ENSG00000005448.12chr2+7465060474650658746504457465051274650981746511090.115000.001370.09422includedHepG2DDX6

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for WDR54 is not avaliable on ENCORE database.