PSME4

General Information

Gene Name : PSME4
Gene ID : ENSG00000068878.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PSME4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PSME4	ENSG00000068878.14	41.72	35.35	38.53	ENCSR000AEF
HepG2	PSME4	ENSG00000068878.14	57.12	88.77	72.94	ENCSR985KAT
K562	PSME4	ENSG00000068878.14	47.12	48.25	47.69	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PSME4 is not avaliable on ENCORE database.

Proteins bound to RNA

PSME4 RNA is bound by 71 proteins.

CanvasJS.com

eCLIP assay for PSME4 is not avaliable on ENCORE database.

71 proteins are bound to PSME4 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	54197819	54197916	-	CDS,intron-Distal,intron-Proximal	7.73287	400.00000	K562	GTF2F1
chr2	54197916	54197945	-	5'-UTR,CDS,intron-Distal,intron-Proximal	8.21302	174.75742	K562	GTF2F1
chr2	54197895	54197951	-	5'-UTR,CDS,intron-Distal,intron-Proximal	7.24248	148.53639	HepG2	PRPF4
chr2	54172556	54172712	-	intron-Distal	4.74124	85.32118	HepG2	PTBP1
chr2	54197894	54197950	-	5'-UTR,CDS,intron-Distal,intron-Proximal	6.13458	78.18084	HepG2	GTF2F1
chr2	54197853	54197947	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.87007	77.03560	K562	CSTF2T
chr2	54197888	54197948	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.76085	76.81690	HepG2	FAM120A
chr2	54197808	54197926	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.17405	59.66348	HepG2	PPIG
chr2	54197830	54197954	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.54531	51.42724	HepG2	CSTF2T
chr2	54197825	54197941	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.45960	47.12124	HepG2	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 341 entries

eCLIP assay for PSME4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PSME4 is not available on ENCORE database.
112 RBPs can affect the levels of PSME4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PSME4 is not available on ENCORE database.

112 RBPs can affect the gene expression of PSME4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PSME4	ENSG00000068878.10	2090.51810	4112.40930	-0.97610	46.29540	44.07100	HepG2	HNRNPU
PSME4	ENSG00000068878.10	1586.76560	4139.78050	-1.38350	43.59360	41.24990	HepG2	HNRNPC
PSME4	ENSG00000068878.10	6237.48580	3905.51460	0.67540	28.41790	27.25300	HepG2	SRSF1
PSME4	ENSG00000068878.10	2437.24200	4031.69980	-0.72610	26.41980	24.90100	HepG2	TRIM56
PSME4	ENSG00000068878.10	1873.82200	3764.48600	-1.00650	26.63870	24.86720	K562	HNRNPC
PSME4	ENSG00000068878.10	5016.38880	3177.36900	0.65870	25.37690	24.02000	HepG2	SRSF9
PSME4	ENSG00000068878.10	2149.19420	3686.43460	-0.77840	23.62090	21.78320	HepG2	DNAJC21
PSME4	ENSG00000068878.10	6506.66250	4738.56970	0.45740	18.13920	17.04240	HepG2	ZNF622
PSME4	ENSG00000068878.10	2870.01790	5025.21140	-0.80810	18.11780	16.77380	HepG2	PUF60
PSME4	ENSG00000068878.10	4051.09570	5780.91410	-0.51300	16.42130	15.38870	HepG2	SSB
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 126 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PSME4 is not available on ENCORE database.

23 RBPs can affect the splicing of PSME4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PSME4	ENSG00000068878.10	chr2	-	54167092	54167137	54164527	54164677	54175557	54175674	-0.12100	0.00009	excluded	HepG2	U2AF1
SE	PSME4	ENSG00000068878.10	chr2	-	54167092	54167137	54164527	54164677	54175557	54175674	-0.15400	0.00000	excluded	HepG2	U2AF2
SE	PSME4	ENSG00000068878.10	chr2	-	54127017	54127154	54125437	54125491	54128486	54128696	-0.09700	0.00000	excluded	K562	AQR
SE	PSME4	ENSG00000068878.10	chr2	-	54122143	54122213	54120810	54120936	54122719	54122873	-0.08500	0.00000	excluded	K562	AQR
SE	PSME4	ENSG00000068878.10	chr2	-	54096512	54096675	54093883	54094017	54101475	54101631	-0.16300	0.00000	excluded	K562	AQR
SE	PSME4	ENSG00000068878.10	chr2	-	54167092	54167137	54164527	54164677	54175557	54175674	-0.18700	0.00000	excluded	K562	PUS1
SE	PSME4	ENSG00000068878.10	chr2	-	54167092	54167137	54164527	54164677	54175557	54175674	-0.49500	0.00000	excluded	K562	U2AF1
SE	PSME4	ENSG00000068878.10	chr2	-	54127017	54127154	54125437	54125491	54128486	54128696	-0.07100	0.00004	excluded	HepG2	SF3A3
SE	PSME4	ENSG00000068878.10	chr2	-	54167092	54167137	54164527	54164677	54175557	54175674	-0.12100	0.00010	excluded	K562	UTP18
SE	PSME4	ENSG00000068878.10	chr2	-	54167092	54167137	54164527	54164677	54175557	54175674	-0.41500	0.00000	excluded	K562	U2AF2

Showing 1 to 10 of 72 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PSME4

General Information

Functions

Localization

Domains (AlphaFold: PSME4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PSME4 is not avaliable on ENCORE database.

71 proteins are bound to PSME4 RNA:

eCLIP assay for PSME4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PSME4 is not available on ENCORE database.

112 RBPs can affect the gene expression of PSME4 :

The Knockdown/knockout RNA-Seq assay for PSME4 is not available on ENCORE database.

23 RBPs can affect the splicing of PSME4 :

The Knockdown/knockout RNA-Seq assay for PSME4 is not avaliable on ENCORE database.