DDB1

General Information

Gene Name : DDB1
Gene ID : ENSG00000167986.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: DDB1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	DDB1	ENSG00000167986.13	101.09	138.11	119.60	ENCSR000AEF
HepG2	DDB1	ENSG00000167986.13	171.81	159.30	165.56	ENCSR985KAT
K562	DDB1	ENSG00000167986.13	187.18	178.77	182.98	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for DDB1 is not avaliable on ENCORE database.

Proteins bound to RNA

DDB1 RNA is bound by 47 proteins.

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eCLIP assay for DDB1 is not avaliable on ENCORE database.

47 proteins are bound to DDB1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	61067217	61067315	-	3'-UTR,intron-Distal,intron-Proximal	7.19791	400.00000	HepG2	SUB1
chr11	61071292	61071297	-	intron-Distal,intron-Proximal	6.09505	400.00000	K562	AQR
chr11	61071297	61071332	-	intron-Distal,intron-Proximal	6.21017	400.00000	K562	AQR
chr11	61071333	61071336	-	intron-Distal,intron-Proximal	6.15175	76.61905	K562	AQR
chr11	61066980	61067051	-	3'-UTR,intron-Distal,intron-Proximal	5.77443	63.58248	HepG2	SUB1
chr11	61067197	61067286	-	3'-UTR,intron-Distal,intron-Proximal	4.38369	63.33809	K562	TARDBP
chr11	61067156	61067218	-	3'-UTR,intron-Distal,intron-Proximal	4.41625	44.68611	K562	PABPC4
chr11	61067218	61067259	-	3'-UTR,intron-Distal,intron-Proximal	3.67935	32.81040	K562	PABPC4
chr11	61100432	61100559	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.55378	32.01094	K562	DDX3X
chr11	61096834	61096856	-	CDS,intron-Distal,intron-Proximal	5.20137	22.25904	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 338 entries

eCLIP assay for DDB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for DDB1 is not available on ENCORE database.
106 RBPs can affect the levels of DDB1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for DDB1 is not available on ENCORE database.

106 RBPs can affect the gene expression of DDB1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
DDB1	ENSG00000167986.9	4724.30030	10774.84480	-1.18950	27.91890	25.81940	HepG2	ASCC1
DDB1	ENSG00000167986.9	7811.56740	11801.24080	-0.59530	23.43750	22.00020	HepG2	SF3B4
DDB1	ENSG00000167986.9	7426.15320	11139.84230	-0.58500	21.93240	20.48780	HepG2	PCBP1
DDB1	ENSG00000167986.9	7872.40370	12295.22230	-0.64320	21.50610	19.78970	K562	EIF2S2
DDB1	ENSG00000167986.9	8123.46600	12194.61250	-0.58610	21.29740	19.71780	HepG2	AUH
DDB1	ENSG00000167986.9	15067.16900	9613.89650	0.64810	20.01620	18.38120	K562	RBM15
DDB1	ENSG00000167986.9	4875.22640	8316.07360	-0.77040	18.83320	17.35310	K562	HNRNPC
DDB1	ENSG00000167986.9	8009.92320	11335.43460	-0.50100	16.58300	15.46010	HepG2	PTBP1
DDB1	ENSG00000167986.9	6101.33590	8344.98610	-0.45180	15.01750	13.78420	HepG2	PUS1
DDB1	ENSG00000167986.9	9279.61410	12615.06050	-0.44300	13.30510	12.28050	HepG2	NELFE
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 118 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for DDB1 is not available on ENCORE database.

2 RBPs can affect the splicing of DDB1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	DDB1	ENSG00000167986.9	chr11	-	61091709	61091859	61091450	61091609	61093082	61093180	-0.07400	0.00004	excluded	K562	SBDS
A3SS	DDB1	ENSG00000167986.9	chr11	-	61077267	61077476	61077267	61077432	61077766	61077917	0.06400	0.00000	longer	K562	AQR
A3SS	DDB1	ENSG00000167986.9	chr11	-	61077766	61077939	61077766	61077890	61079255	61079367	0.07900	0.00000	longer	K562	AQR
A3SS	DDB1	ENSG00000167986.9	chr11	-	61070517	61070727	61070517	61070627	61071336	61071507	0.06600	0.00000	longer	K562	AQR

Showing 1 to 4 of 4 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

DDB1

General Information

Functions

Localization

Domains (AlphaFold: DDB1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for DDB1 is not avaliable on ENCORE database.

47 proteins are bound to DDB1 RNA:

eCLIP assay for DDB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for DDB1 is not available on ENCORE database.

106 RBPs can affect the gene expression of DDB1 :

The Knockdown/knockout RNA-Seq assay for DDB1 is not available on ENCORE database.

2 RBPs can affect the splicing of DDB1 :

The Knockdown/knockout RNA-Seq assay for DDB1 is not avaliable on ENCORE database.