CDC40

General Information

Gene Name       : CDC40
Gene ID             : ENSG00000168438.14
Essential Gene : Yes

Functions

Localization(RBPImage: CDC40)

Domains (AlphaFold: CDC40)


Antibody Validation

 View validation images for all CDC40 antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CDC40ENSG00000168438.1423.5418.5921.06ENCSR000AEF
HepG2CDC40ENSG00000168438.146.7611.829.29ENCSR985KAT
K562CDC40ENSG00000168438.1412.0311.1511.59ENCSR000AEO

Assays

5 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 556ENCSR815VVICDC40HepG2ReleasedENCAB127ICLENCSR828ALT  
knockdown followed by RNA-seq CDC40-BGKcLV08-K562ENCSR354DVYCDC40K562ReleasedENCSR015KGT   CRISPRKD% = 57.0,56.0
knockdown followed by RNA-seq CDC40-BGHcLV05-HepG2ENCSR278NFFCDC40HepG2ReleasedENCSR481WJH   CRISPRKD% = 70.8,65.7
knockdown followed by RNA-seq CDC40-BG293LV04-WT293CDC40293TReleased   shRNAKD% = ,
knockdown followed by RNA-seq CDC40-BG293LV06-WT293CDC40293TReleased   shRNAKD% = ,






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
CDC40556HepG2ENCSR815VVIENCSR828ALTENCAB127ICLA303-699A1ReleasedENCODE3


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
CDC40ENCAB127ICLA303-699A1Released, ENCODE3Released, ENCODE3BGHcLV05-7, Released, ENCODE3BGKcLV08-3, Released, ENCODE4
CDC4099086S1Released, ENCODE3Submitted, ENCORE2BGHcLV05-7, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
CDC40K562shRNABGKLV28-5,BGKLV28-6BGKLV28-1,BGKLV28-2NotSatisfiedENCODE3
CDC40K562shRNABGKLV34-11,BGKLV34-12BGKLV34-1,BGKLV34-2NotSatisfiedENCODE3
CDC40HepG2shRNABGHLV17-49,BGHLV17-50BGHLV17-1,BGHLV17-2NotSatisfiedENCODE3
CDC40HepG2shRNABGHLV20-7,BGHLV20-8BGHLV20-1,BGHLV20-2redo transfection,redo transfectionNotSatisfiedENCODE3
CDC40K562CRISPRBGKcLV04-3,BGKcLV04-4BGKcLV04-1,BGKcLV04-234.9,9.4NotSatisfiedENCODE3
CDC40K562CRISPRBGKcLV04-3-D12,BGKcLV04-4-D12BGKcLV04-1,BGKcLV04-20.0,0.0NotSatisfiedENCODE3
CDC40K562CRISPRBGKcLV04-4-D12,BGKcLV04-3-D20BGKcLV04-1,BGKcLV04-20.0,32.1NotSatisfiedENCODE3
CDC40K562CRISPRBGKcLV04-3-D20,BGKcLV04-4-D20BGKcLV04-1,BGKcLV04-232.1,38.0NotSatisfiedENCODE3
CDC40K562CRISPRBGKcLV04-4-D20,BGKcLV04-3-D30BGKcLV04-1,BGKcLV04-238.0,0.0NotSatisfiedENCODE3
CDC40K562CRISPRBGKcLV04-3-D30,BGKcLV04-4-D30BGKcLV04-1,BGKcLV04-20.0,0.0NotSatisfiedENCODE3
CDC40K562CRISPRBGKcLV04-4-D30,BGKcLV08-3BGKcLV04-1,BGKcLV04-20.0,57.0NotSatisfiedENCODE3
CDC40K562CRISPRENCSR354DVYENCSR015KGTCDC40-BGKcLV08-3,CDC40-BGKcLV08-4NT-BGKcLV08-1,NT-BGKcLV08-257.0,56.0ReleasedENCODE4
CDC40K562CRISPRBGKcLV08-5,BGKcLV08-6BGKcLV08-1,BGKcLV08-247.0,47.0NotSatisfiedENCODE4
CDC40K562CRISPRBGKcLV44-95,BGKcLV44-96BGKcLV44-1,BGKcLV44-2NotSatisfiedENCORE2
CDC40K562CRISPRBGKcLV44-97,BGKcLV44-98BGKcLV44-1,BGKcLV44-2NotSatisfiedENCORE2
CDC40HepG2CRISPRENCSR278NFFENCSR481WJHCDC40_BGHcLV05_7,CDC40_BGHcLV05_8NT_BGHcLV05-1,NT_BGHcLV05-270.8,65.7ReleasedENCODE3
CDC40293TshRNABG293LV01-3,BG293LV01-4BG293LV01-1,BG293LV01-2NotSatisfiedENCORE2
CDC40293TshRNABG293LV01-5,BG293LV01-6BG293LV01-1,BG293LV01-2NotSatisfiedENCORE2
CDC40293TshRNABG293LV01-7,BG293LV01-8BG293LV01-1,BG293LV01-2NotSatisfiedENCORE2
CDC40293TshRNABG293LV04-11,BG293LV04-12BG293LV04-1,BG293LV04-2NotSatisfiedENCORE2
CDC40293TshRNACDC40-BG293LV04-13,CDC40-BG293LV04-14NT-BG293LV04-1,NT-BG293LV04-2,ReleasedENCORE2
CDC40293TshRNACDC40-BG293LV06-119B,CDC40-BG293LV06-120BNT-BG293LV06-1B,NT-BG293LV06-2B,ReleasedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    CDC40: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Speckles
  • Cytoplasm
  • Compartment/Organelle
  • Unknown Cyto Foci
  • Cytoskeleton
  • Microtubule
  • Mitotic-Apparatus (Spindle; Centrosomes)












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    CDC40Product_ID: A303-699A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: CDC40-human    		 HepG2_Bethyl_A303-699A_1_CDC40.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using CDC40 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-CDC40 antibody (lanes under 'CDC40').
    		 CDC40-HEPG2-CRISPR.png<br>Caption: Western blot following CRISPR against CDC40 in HepG2 whole cell lysate using CDC40 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against CDC40. CDC40 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.
    		 K562_Bethyl_A303-699A_1_CDC40.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using CDC40 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 10% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-CDC40 antibody (lanes under 'CDC40').
    		 CDC40-K562-CRISPR.png<br>Caption: Western blot following CRISPR against CDC40 in K562 whole cell lysate using CDC40 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against CDC40.CDC40 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.
    CDC40Product_ID: 99086S
    Lot_ID: 1
    Source: Cell Signaling Technology
    Target Name: CDC40-human    		 CST_99086S_1_CDC40.png<br>Caption: IP-WB analysis of 99086S whole cell lysate using the CDC40 specific antibody, 99086S. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the CDC40-specific antibody, 99086S. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.








    RNA Targets
    • CDC40 protein binds to 1,202 RNA regions.  





    Proteins bound to RNA
    • CDC40 RNA is bound by 7 proteins.  






    CDC40 protein has 1,202 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 1,202 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    CDC40chr2198267187198267225-3.213554.23685HepG2SF3B1intron-Distal,intron-Proximal
    CDC40chr2101458108101458226+3.3508122.91186HepG2NPAS2, AC092168.2intron-Distal
    CDC40chr12123993658123993702-4.195283.10178HepG2RILPL1intron-Distal
    CDC40chr2242606626242606711+3.374514.95521HepG2ATG4Bintron-Distal
    CDC40chr9136799611136799656-3.230484.63188HepG2VAV2intron-Distal
    CDC40chr7157610401157610465-3.732533.78918HepG2PTPRN2intron-Distal
    CDC40chr9137234468137234527+3.812793.76399HepG2RXRAintron-Distal
    CDC40chr1121522112152216-4.00734400.00000HepG2IGF23'-UTR,intron-Distal
    CDC40chr223971338539713425-4.298513.66941HepG2RPL3intron-Distal,intron-Proximal
    CDC40chr7158134576158134607-4.041224.80250HepG2PTPRN2intron-Distal
    CDC40chr214408349444083591+4.8422411.26467HepG2PDE9Aintron-Distal
    CDC40chr177611924776119310-4.695284.50179HepG2TMC6intron-Distal,intron-Proximal
    CDC40chr19954118954210+5.246168.34299HepG2ARID3Aintron-Distal
    CDC40chr1154234219154234297+3.303833.34872HepG2UBAP2Lintron-Distal,intron-Proximal
    CDC40chr3184052813184052902+3.172327.09905HepG2EIF2B5, EIF4G13'-UTR,intron-Distal
    CDC40chr61676112916761201-4.541224.50179HepG2ATXN1intron-Distal
    CDC40chr191325033113250402+3.737206.55876HepG2NACC13'-UTR
    CDC40chr178018813880188187+3.874879.86065HepG2SLC16A3intron-Distal
    CDC40chr1914104381410461+3.628134.69076HepG2DAZAP1intron-Distal
    CDC40chr177611943476119481-5.056526.02382HepG2TMC6intron-Distal
    CDC40chr9136657760136657799-4.637555.11000HepG2VAV2intron-Distal
    CDC40chr12123995832123995910-5.172747.45527HepG2RILPL1intron-Distal
    CDC40chr12121416514121416560+3.506033.85482HepG2HNF1A5'-UTR,CDS,intron-Proximal
    CDC40chr178001046780010555+3.923994.57703HepG2GPS1intron-Distal
    CDC40chr194799465747994740-4.388804.24247HepG2NAPAintron-Distal,intron-Proximal
    CDC40chr88735497687355041+3.430035.52031HepG2WWP15'-UTR
    CDC40chr48334834183348377-3.266656.50023HepG2HNRNPDLCDS,intron-Distal,intron-Proximal
    CDC40chr211547063915470690+4.738365.51392HepG2AP001347.6intron-Distal
    CDC40chrX152912909152912953+3.856255.28341HepG2DUSP9intron-Distal,intron-Proximal
    CDC40chr1121527192152724-6.54690400.00000HepG2IGF23'-UTR,intron-Distal
    CDC40chr107403532474035376+3.606853.85482HepG2DDIT43'-UTR
    CDC40chr12124841447124841501-4.506034.50179HepG2NCOR2intron-Distal,intron-Proximal
    CDC40chr161199177311991812-3.393033.38970HepG2GSPT1intron-Distal,intron-Proximal
    CDC40chr187767327077673326-4.317493.38484HepG2PQLC1intron-Distal
    CDC40chr3126256412126256468+4.991466.53582HepG2CHST13intron-Distal
    CDC40chr224229487542294937+3.064884.63188HepG2SREBF2intron-Distal,intron-Proximal
    CDC40chr1914101121410149+3.125916.27266HepG2DAZAP1intron-Distal,intron-Proximal
    CDC40chr7158124868158124914-4.3562510.19506HepG2PTPRN2intron-Distal
    CDC40chr204303014343030190+4.264609.45140HepG2HNF4Aintron-Distal,intron-Proximal
    CDC40chr168171231281712359+3.798514.30441HepG2CMIPintron-Distal,intron-Proximal
    CDC40chr63317926833179351+3.435354.23685HepG2RING1CDS,intron-Proximal
    CDC40chr34845785248457936-3.9384910.13304HepG2PLXNB13'-UTR,CDS,intron-Distal,intron-Proximal
    CDC40chr1770106787010746-4.541229.23979HepG2ASGR2intron-Distal,intron-Proximal
    CDC40chr63294259532942633+3.473233.34872HepG2BRD2intron-Proximal
    CDC40chr9116968190116968251+3.380265.15014HepG2COL27A1intron-Distal,intron-Proximal
    CDC40chrX7738095277381099+3.9170920.45168HepG2PGK1intron-Distal,intron-Proximal
    CDC40chr3139092493139092553-3.110323.34872HepG2COPB2CDS,intron-Distal,intron-Proximal
    CDC40chr1121531142153137-5.31108400.00000HepG2IGF23'-UTR,intron-Distal
    CDC40chr9137299124137299192+4.367263.66941HepG2RXRA5'-UTR,intron-Distal
    CDC40chr1940660974066144-4.248743.38484HepG2ZBTB7Aintron-Distal
    CDC40chr9136784914136784967-4.590993.66941HepG2VAV2intron-Distal
    CDC40chr7158152666158152740-4.438003.01090HepG2PTPRN2intron-Distal
    CDC40chr64327164743271708+3.619283.76399HepG2SLC22A7intron-Distal,intron-Proximal
    CDC40chr181310674213106826+4.498784.53069HepG2CEP192intron-Distal
    CDC40chr161626530716265422-5.8562512.77950HepG2ABCC6intron-Distal
    CDC40chrX131623450131623520-3.521883.66026HepG2MBNL3intron-Distal
    CDC40chr165062675850626799+4.020315.40303HepG2NKD1intron-Distal
    CDC40chr1121530972153114-5.02472400.00000HepG2IGF23'-UTR,intron-Distal
    CDC40chr5170815168170815202+3.888804.30441HepG2NPM1intron-Distal
    CDC40chr7158233089158233126-5.732467.04966HepG2PTPRN2intron-Distal
    CDC40chr177530495975304989+4.269063.50322HepG2SEPT9intron-Distal
    CDC40chr7158135707158135736-4.269063.50322HepG2PTPRN2intron-Distal
    CDC40chr2242559052242559138-4.791265.00643HepG2THAP4intron-Distal
    CDC40chr21054054610540636+3.998784.80250HepG2HPCAL1intron-Distal
    CDC40chr1121535072153515-3.86382400.00000HepG2IGF23'-UTR,intron-Distal
    CDC40chr7933478933533+4.561544.53069HepG2GET4, SUN1intron-Proximal
    CDC40chr2242750741242750817+3.515584.69270HepG2NEU4intron-Distal,intron-Proximal
    CDC40chr13113985338113985449-3.227835.97206HepG2GRTP1intron-Distal
    CDC40chr168926646389266516-3.813389.71503HepG2SLC22A31intron-Distal
    CDC40chr6136597400136597434-4.211743.01090HepG2BCLAF1CDS,intron-Distal
    CDC40chr177546611775466178+4.4441411.92324HepG2SEPT9, RP11-75C10.7intron-Distal
    CDC40chr1770118987011972-3.026356.24927HepG2ASGR2intron-Distal,intron-Proximal
    CDC40chr203287799532878054-4.817495.69258HepG2AHCYintron-Distal,intron-Proximal
    CDC40chr12121416118121416188-5.549768.08201HepG2HNF1A-AS1intron-Distal
    CDC40chr1121529272152945-5.74939400.00000HepG2IGF23'-UTR,intron-Distal
    CDC40chr21033455910334626+3.600554.03335HepG2C2orf48intron-Distal
    CDC40chr2101458571101458609+3.068994.75190HepG2AC092168.2, NPAS2intron-Distal
    CDC40chr195734640157346482-3.3541813.69553HepG2ZIM2, PEG3intron-Distal
    CDC40chr19798526798582+3.574784.30441HepG2PTBP15'-UTR,CDS,intron-Distal,intron-Proximal
    CDC40chr177473219874732258-3.3127922.81896HepG2SRSF23'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal
    CDC40chr2241563437241563488+3.798514.80250HepG2GPR35intron-Distal
    CDC40chr1972967973071+4.105286.23922HepG2AGRNintron-Distal
    CDC40chr214756039347560434-3.4970710.97770HepG2FTCDintron-Distal
    CDC40chr214695212946952173-4.034323.10178HepG2SLC19A1intron-Distal,intron-Proximal
    CDC40chr77285547472855546-3.006033.12611HepG2BAZ1B3'-UTR,intron-Distal
    CDC40chr1940363264036393+6.3959219.14121HepG2PIAS4intron-Distal
    CDC40chr1950413225041403+4.137553.50322HepG2KDM4Bintron-Distal,intron-Proximal
    CDC40chr11264483412644894-4.684106.74777HepG2DHRS3intron-Distal
    CDC40chr223574026835740378+5.2063015.36787HepG2TOM1intron-Distal
    CDC40chr1121529452152951-5.86642400.00000HepG2IGF23'-UTR,intron-Distal
    CDC40chr68632479986324861-4.498784.53069HepG2SYNCRIP, RP11-321N4.5CDS,intron-Distal
    CDC40chr79233822492338283-3.606853.85482HepG2CDK6intron-Distal
    CDC40chr721459192145975-4.476583.95534HepG2MAD1L1intron-Distal
    CDC40chr1628202432820312+4.1344133.78378HepG2SRRM2intron-Distal,intron-Proximal
    CDC40chr6159048123159048307+4.2523364.97931HepG2TMEM181, AL591025.1intron-Distal
    CDC40chr6167417925167417986+3.282303.78918HepG2RP11-517H2.6, FGFR1OPintron-Distal,intron-Proximal
    CDC40chr2028196712819730-3.9996910.19506HepG2PCED1ACDS,intron-Distal,intron-Proximal
    CDC40chr2242255541242255580+3.114645.07340HepG2SEPT25'-UTR,intron-Distal
    CDC40chr1121526822152688-5.97780400.00000HepG2IGF23'-UTR,intron-Distal
    CDC40chr168170342281703530+3.351053.78918HepG2CMIPintron-Distal




    7 proteins are bound to CDC40 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr6110531908110531943+CDS,intron-Proximal4.507034.16170K562UCHL5
    chr6110530370110530426+CDS3.657824.76274K562UCHL5
    chr6110536489110536561+CDS,intron-Proximal5.0254211.09609HepG2PRPF8
    chr6110536520110536622+CDS,intron-Proximal3.530823.18246K562PRPF8
    chr6110547385110547444+CDS,intron-Distal4.187843.71570HepG2BCLAF1
    chr6110533342110533476+CDS,intron-Proximal3.703007.25346K562UCHL5
    chr6110540943110541081+CDS,intron-Proximal4.149386.22576HepG2BCLAF1
    chr6110503797110503946+intron-Distal4.330323.55787K562PTBP1
    chr6110533183110533303+intron-Distal,intron-Proximal3.775063.24603K562KHSRP
    chr6110502920110503021+intron-Distal4.166023.29248HepG2SUGP2
    chr6110503832110504034+intron-Distal3.113233.32889K562MATR3
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    No autoregularoty interactions between protein CDC40 and its RNA.



    Diffrential Expression
    • 158 differentially expressed genes after Knockdown/Knockout CDC40 protein.  





    • 54 RBPs can affect the levels of CDC40.  







    158 differentially expressed genes after Knockdown/Knockout CDC40 protein :

    Only display 100 entries as example. Please click "View All" button to see all 158 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    GCLCENSG00000001084.61635.92940827.450100.983307.817004.57780HepG2CDC40
    SYT7ENSG00000011347.5563.36640994.31770-0.819605.266602.59470HepG2CDC40
    TOMM34ENSG00000025772.71268.36000649.592600.965306.840003.73700HepG2CDC40
    RNASET2ENSG00000026297.112444.553103669.62150-0.586103.775601.51610HepG2CDC40
    RNF19AENSG00000034677.72246.951403374.61390-0.586803.577201.38550HepG2CDC40
    SH3YL1ENSG00000035115.17376.58300608.41020-0.692103.515501.34140HepG2CDC40
    CDH1ENSG00000039068.141580.847002616.25230-0.726803.549601.36680HepG2CDC40
    LSG1ENSG00000041802.6443.39710225.264600.976905.305102.62410HepG2CDC40
    FNIP2ENSG00000052795.81346.183902587.54600-0.942706.245603.32390HepG2CDC40
    MSMO1ENSG00000052802.82559.349704172.69160-0.705204.743602.18990HepG2CDC40
    FOXN3ENSG00000053254.115524.588508604.56390-0.639204.066001.72140HepG2CDC40
    USP13ENSG00000058056.41332.942102233.13730-0.744504.974502.37720HepG2CDC40
    SLC2A3ENSG00000059804.112674.676704318.78120-0.691304.858102.29030HepG2CDC40
    WNK1ENSG00000060237.1210422.5018016467.11080-0.659904.378601.93830HepG2CDC40
    UFD1LENSG00000070010.14542.07760318.887700.765403.730601.49800HepG2CDC40
    TP53INP2ENSG00000078804.84988.549907452.63320-0.579103.457501.30310HepG2CDC40
    HALENSG00000084110.6943.839101607.90300-0.768605.137802.49220HepG2CDC40
    MGST2ENSG00000085871.42029.227903216.63300-0.664603.812701.52900HepG2CDC40
    DPYSL2ENSG00000092964.121959.216203384.37030-0.788605.892903.04490HepG2CDC40
    XYLBENSG00000093217.5784.495001426.71700-0.862903.871701.57480HepG2CDC40
    SORBS1ENSG00000095637.161994.201203116.58260-0.644204.088901.74010HepG2CDC40
    SCDENSG00000099194.528293.8449043207.38380-0.610803.923001.60730HepG2CDC40
    JAG1ENSG00000101384.72660.153401630.706200.705904.497601.99570HepG2CDC40
    LIPGENSG00000101670.7196.91270357.69520-0.861204.176601.79660HepG2CDC40
    RNF125ENSG00000101695.4123.21930274.00110-1.153005.435202.70530HepG2CDC40
    TIMP1ENSG00000102265.7267.19840102.031201.388806.834903.73700HepG2CDC40
    SALL1ENSG00000103449.7615.43860374.764300.715503.607201.40940HepG2CDC40
    AAGABENSG00000103591.8435.00310250.431500.796503.712501.48370HepG2CDC40
    KIAA1199ENSG00000103888.11338.58080131.645301.362704.907902.32560HepG2CDC40
    SQLEENSG00000104549.73910.775406350.07080-0.699304.881502.30660HepG2CDC40
    SULT2A1ENSG00000105398.32955.902304493.89670-0.604403.658801.44240HepG2CDC40
    SERPINE1ENSG00000106366.719070.6812031326.54140-0.716005.699102.90230HepG2CDC40
    PTGR1ENSG00000106853.12188.6018067.636501.479406.777303.70290HepG2CDC40
    PLEKHA1ENSG00000107679.101456.477202247.41380-0.625803.644101.43090HepG2CDC40
    DKK1ENSG00000107984.5217.9149099.541301.130304.475601.98580HepG2CDC40
    RASD1ENSG00000108551.483.7673022.554401.892905.228802.56870HepG2CDC40
    ABCC3ENSG00000108846.11417.24240232.787800.841803.709701.48370HepG2CDC40
    SLC1A2ENSG00000110436.72731.863704324.17170-0.662504.215001.81130HepG2CDC40
    ARHGDIBENSG00000111348.438.434905.435602.821804.412501.95140HepG2CDC40
    GPR133ENSG00000111452.8538.36370961.88420-0.837305.445902.70550HepG2CDC40
    PERPENSG00000112378.111617.092802629.21480-0.701204.550102.02950HepG2CDC40
    CCR6ENSG00000112486.10183.99630337.77630-0.876403.763801.51480HepG2CDC40
    VEGFAENSG00000112715.168903.2695013127.93930-0.560203.512501.34120HepG2CDC40
    MAN2A1ENSG00000112893.52592.185303959.07970-0.611003.556901.36910HepG2CDC40
    LOXENSG00000113083.82700.801205168.21260-0.936304.318401.88960HepG2CDC40
    CCNG1ENSG00000113328.144514.766907216.54760-0.676703.507601.33920HepG2CDC40
    IL1RL1ENSG00000115602.1244.008105.562002.984003.772101.51610HepG2CDC40
    MAP7D1ENSG00000116871.11280.38480132.101201.085705.030202.41740HepG2CDC40
    LGALS8ENSG00000116977.143148.870805473.86120-0.797706.095403.21940HepG2CDC40
    CDK18ENSG00000117266.111498.430702307.30830-0.622803.936701.61300HepG2CDC40
    SLC19A2ENSG00000117479.8779.336401368.89440-0.812705.363502.65380HepG2CDC40
    SGK1ENSG00000118515.71210.173701957.98650-0.694204.597202.06360HepG2CDC40
    SPP1ENSG00000118785.92442.07690650.278201.908904.501001.99570HepG2CDC40
    TJP2ENSG00000119139.123916.100206121.13200-0.644404.454101.97610HepG2CDC40
    ACAT2ENSG00000120437.72156.679503250.75240-0.592003.502701.33710HepG2CDC40
    HSPH1ENSG00000120694.151470.13260820.666200.841005.995503.13380HepG2CDC40
    FAM213AENSG00000122378.9696.002701141.40790-0.713604.419901.95330HepG2CDC40
    DDX39AENSG00000123136.10116.1652041.833701.473304.397801.94230HepG2CDC40
    OPTNENSG00000123240.121572.894302803.54030-0.833806.367503.41230HepG2CDC40
    PODXLENSG00000128567.1222.4035081.17370-1.857304.987502.38260HepG2CDC40
    EGLN3ENSG00000129521.9718.801701177.87120-0.712504.112701.75940HepG2CDC40
    G6PCENSG00000131482.56313.7271010845.43750-0.780504.666902.12670HepG2CDC40
    CYP2J2ENSG00000134716.5274.40320463.53400-0.756403.733201.49800HepG2CDC40
    NREPENSG00000134986.92784.458704494.52150-0.690803.555001.36910HepG2CDC40
    IL1RNENSG00000136689.141472.883402683.99970-0.865706.639603.62890HepG2CDC40
    ANGPTL2ENSG00000136859.51215.313102516.46600-1.050104.505801.99570HepG2CDC40
    PIM1ENSG00000137193.91626.915802569.95940-0.659604.357901.92380HepG2CDC40
    HMGA1ENSG00000137309.154116.821602730.165300.592403.479501.31950HepG2CDC40
    SORL1ENSG00000137642.85701.4772011021.50950-0.950908.948405.59530HepG2CDC40
    UACAENSG00000137831.10872.246201453.92170-0.737103.687501.46790HepG2CDC40
    TET1ENSG00000138336.8777.489201260.54270-0.697203.943001.61520HepG2CDC40
    FAM13AENSG00000138640.101212.573902274.20460-0.907307.373404.16640HepG2CDC40
    MTTPENSG00000138823.82602.750304474.89330-0.781805.811002.97640HepG2CDC40
    FBLN5ENSG00000140092.10175.99620353.14460-1.004705.093402.45630HepG2CDC40
    WARSENSG00000140105.13688.19460399.578700.784204.377601.93830HepG2CDC40
    ARRDC4ENSG00000140450.7625.28230240.931701.3758010.338806.88870HepG2CDC40
    FURINENSG00000140564.6258.16570123.620301.062304.387101.93830HepG2CDC40
    OSGIN1ENSG00000140961.8377.57840181.887101.053605.222802.56870HepG2CDC40
    IFITM3ENSG00000142089.112154.061201281.204700.749505.065902.43700HepG2CDC40
    SH3BGRL3ENSG00000142669.9649.87650371.538900.806604.447501.97520HepG2CDC40
    ARL8AENSG00000143862.3327.21030177.110400.885503.794201.52410HepG2CDC40
    SLC20A1ENSG00000144136.61881.032603028.00800-0.686804.768702.20800HepG2CDC40
    AGTR1ENSG00000144891.13804.410101404.30040-0.803805.345502.64560HepG2CDC40
    CPLX2ENSG00000145920.10341.74870110.182601.6329010.574907.06680HepG2CDC40
    TNFRSF21ENSG00000146072.61612.07780960.463000.747004.958602.36890HepG2CDC40
    TMEM181ENSG00000146433.84359.461606815.91820-0.644804.302301.88370HepG2CDC40
    IGFBP3ENSG00000146674.103620.520608158.22880-1.1721012.388708.81370HepG2CDC40
    IGSF1ENSG00000147255.134708.709608003.72640-0.765305.766002.94430HepG2CDC40
    AUHENSG00000148090.7951.764701496.06560-0.652503.627701.41760HepG2CDC40
    LPPR1ENSG00000148123.10457.21970836.73560-0.871905.333602.64330HepG2CDC40
    ESAMENSG00000149564.782.4431017.398502.244304.576202.04920HepG2CDC40
    TAGLNENSG00000149591.1297.4116036.118501.431303.747301.50650HepG2CDC40
    SOGA1ENSG00000149639.101145.07320719.297700.670703.913201.60150HepG2CDC40
    MMP3ENSG00000149968.7446.226509.143605.6088061.2908056.93770HepG2CDC40
    FARP1ENSG00000152767.119102.0333013991.60020-0.620304.112501.75940HepG2CDC40
    PLOD2ENSG00000152952.79425.8033014775.74750-0.648503.972601.63660HepG2CDC40
    LPCAT1ENSG00000153395.52465.735104144.02670-0.749005.638702.86530HepG2CDC40
    ROBO4ENSG00000154133.10143.60440275.52940-0.940104.208101.81030HepG2CDC40
    FRRS1ENSG00000156869.8287.80160484.98910-0.752903.523301.34630HepG2CDC40
    ATAD3BENSG00000160072.15192.6542076.328001.335604.196401.80830HepG2CDC40
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    54 RBPs can affect the gene expression of CDC40 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    CDC40ENSG00000168438.10423.65930569.37020-0.426503.874103.17740HepG2ACO1
    CDC40ENSG00000168438.10614.88620862.27570-0.487806.012205.06270HepG2AUH
    CDC40ENSG00000168438.10192.10720379.75940-0.983203.692701.46990HepG2CDC40
    CDC40ENSG00000168438.10651.44790449.490700.535302.504901.78010HepG2CNOT7
    CDC40ENSG00000168438.10290.59730562.13150-0.951909.312408.12360HepG2CPSF6
    CDC40ENSG00000168438.10539.75000752.38590-0.479203.170902.49250HepG2CELF1
    CDC40ENSG00000168438.10651.52550809.05210-0.312403.146602.36380HepG2DAZAP1
    CDC40ENSG00000168438.10346.27480492.60690-0.508503.423902.67580HepG2DDX21
    CDC40ENSG00000168438.10441.35480638.34090-0.532402.224201.35090HepG2DDX59
    CDC40ENSG00000168438.10464.21250691.68030-0.575302.112101.56570HepG2DDX6
    CDC40ENSG00000168438.10320.00840475.97680-0.572805.851104.95520HepG2DNAJC2
    CDC40ENSG00000168438.10304.98500462.49860-0.600704.142802.72230HepG2EIF2S2
    CDC40ENSG00000168438.10785.19700990.01070-0.334403.179802.54290HepG2ETF1
    CDC40ENSG00000168438.10270.62850469.36720-0.794407.195005.51270HepG2FASTKD2
    CDC40ENSG00000168438.10408.65540637.22630-0.640904.510503.70620HepG2GPKOW
    CDC40ENSG00000168438.10351.44230539.28300-0.617804.570003.69360HepG2HNRNPC
    CDC40ENSG00000168438.10404.21130737.00050-0.8666015.7980014.30420HepG2HNRNPL
    CDC40ENSG00000168438.10415.29150547.21910-0.398003.772102.92890HepG2ILF2
    CDC40ENSG00000168438.10486.67700708.20260-0.541206.231705.37630HepG2PCBP1
    CDC40ENSG00000168438.10613.37820765.80480-0.320202.117201.58600HepG2PUF60
    CDC40ENSG00000168438.10600.47550812.91840-0.437005.596004.81450HepG2PUM1
    CDC40ENSG00000168438.10581.37190827.46520-0.509205.497004.82930HepG2RBM22
    CDC40ENSG00000168438.10448.97360660.15140-0.556203.691402.53630HepG2RBM27
    CDC40ENSG00000168438.10465.25080608.86090-0.388102.022801.33160HepG2RPS2
    CDC40ENSG00000168438.10435.65260556.36550-0.352902.887902.23210HepG2SMN1
    CDC40ENSG00000168438.101041.67560783.110200.411504.724604.14870HepG2SRSF1
    CDC40ENSG00000168438.10514.18240637.10190-0.309202.436801.91190HepG2SRSF9
    CDC40ENSG00000168438.10356.40700520.57010-0.546604.405203.80450HepG2TIAL1
    CDC40ENSG00000168438.10318.70360525.20210-0.720708.729807.81590HepG2TRIM56
    CDC40ENSG00000168438.10725.29190526.604200.461702.818202.18430HepG2U2AF1
    CDC40ENSG00000168438.10209.44720321.32190-0.617402.126501.46150HepG2UCHL5
    CDC40ENSG00000168438.10444.04860543.30750-0.291101.895601.38020HepG2UTP3
    CDC40ENSG00000168438.10316.51580535.35980-0.758202.490101.79920HepG2XRN2
    CDC40ENSG00000168438.10878.632401095.39690-0.318102.805401.69280K562CPEB4
    CDC40ENSG00000168438.10523.21430706.39450-0.433103.357202.49130K562CPSF6
    CDC40ENSG00000168438.10694.58820916.95200-0.400704.020203.17820K562EIF2S2
    CDC40ENSG00000168438.10495.18790704.13460-0.507904.891803.84930K562EIF3G
    CDC40ENSG00000168438.10569.72500788.60300-0.469002.964302.11650K562EIF4A3
    CDC40ENSG00000168438.10619.45470785.51110-0.342602.151701.40160K562FIP1L1
    CDC40ENSG00000168438.101204.01230823.188500.548503.814402.95410K562G3BP2
    CDC40ENSG00000168438.10473.80450674.43530-0.509403.964403.01870K562GPKOW
    CDC40ENSG00000168438.10910.279901222.01140-0.424903.879502.99000K562GRSF1
    CDC40ENSG00000168438.10320.66570564.34750-0.815507.889806.93030K562HNRNPC
    CDC40ENSG00000168438.10319.33670503.88380-0.658005.220003.58140K562HNRNPF
    CDC40ENSG00000168438.10817.395101024.29560-0.325502.468201.47640K562HNRNPL
    CDC40ENSG00000168438.10859.513001127.28650-0.391302.408801.62130K562MAGOH
    CDC40ENSG00000168438.10875.684401125.08920-0.361602.307801.47160K562MATR3
    CDC40ENSG00000168438.10513.07490658.32310-0.359602.353001.54870K562METAP2
    CDC40ENSG00000168438.101300.33190936.039800.474103.121802.17580K562NAA15
    CDC40ENSG00000168438.10704.24230891.73420-0.340502.204201.47530K562PPIG
    CDC40ENSG00000168438.10744.742101095.18540-0.556404.496303.66950K562PTBP1
    CDC40ENSG00000168438.101551.252401113.909500.477704.430403.76600K562PUS1
    CDC40ENSG00000168438.10743.518801050.47390-0.498602.898102.03360K562RBM22
    CDC40ENSG00000168438.10498.48290724.09880-0.538603.581902.42710K562RPS3
    CDC40ENSG00000168438.10322.26870437.52920-0.441102.382901.44870K562SRFBP1
    CDC40ENSG00000168438.10793.463101073.58070-0.436202.562701.87870K562SRSF1
    CDC40ENSG00000168438.10527.78970699.01540-0.405402.801701.74090K562SRSF4
    CDC40ENSG00000168438.10412.16670565.84980-0.457202.478301.52200K562SUPV3L1
    CDC40ENSG00000168438.10674.387501086.67620-0.688305.807004.75690K562TARDBP
    CDC40ENSG00000168438.10784.021701048.18450-0.418902.733301.92150K562TIA1
    CDC40ENSG00000168438.10750.41310947.80990-0.336902.489001.80540K562UPF1
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    178 alternative splicing events after Knockdown/Knockout CDC40 protein :

    Only display 100 entries as example. Please click "View All" button to see all 178 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEADD1ENSG00000087274.12chr4+2911065291115829102412910331291661029167670.120000.000090.03261includedHepG2CDC40
    SENRIP1ENSG00000180530.5chr21-1638666416386787163335551634084716415815164158950.187000.000080.02802includedHepG2CDC40
    SEPLOD2ENSG00000152952.7chr3-1457956481457957111457945681457946821457969021457970440.127000.000340.08161includedHepG2CDC40
    SEELL2ENSG00000118985.10chr5-9526833595268417952551279525524995278705952787530.057000.000010.00850includedHepG2CDC40
    SEKDM2AENSG00000173120.10chr11+6689942266899544668887046688882966947549669479240.066000.000160.04817includedHepG2CDC40
    SECYTH1ENSG00000108669.12chr17-7669208876692091766884987668857576694350766944620.243000.000110.03778includedHepG2CDC40
    SEEIF4HENSG00000106682.10chr7+7360457673604636736041517360424873609070736092080.053000.000000.00010includedHepG2CDC40
    SEATF2ENSG00000115966.12chr2-1759572701759573441759453871759454931759577881759579950.173000.000040.01637includedHepG2CDC40
    SETMEM214ENSG00000119777.14chr2+2726065727260760272603952726057027261013272611050.130000.000170.05075includedHepG2CDC40
    SEFUBP3ENSG00000107164.15chr9+1335065471335066801335060141335061751335069431335070170.132000.000020.00968includedHepG2CDC40
    SERTCAENSG00000137996.8chr1+1007330551007330941007320791007321801007337071007338510.269000.000120.03778includedHepG2CDC40
    SEAHSA2ENSG00000173209.18chr2+6141068161410797614084726140854061411846614119350.160000.000000.00313includedHepG2CDC40
    SEUSP3ENSG00000140455.12chr15+6382600163826117638248456382490663829223638293550.204000.000030.01215includedHepG2CDC40
    SEFNBP4ENSG00000109920.8chr11-4774728847747388477460234774633047752925477531130.061000.000220.06220includedHepG2CDC40
    SETCERG1ENSG00000113649.7chr5+1458479031458479661458431971458433561458491061458493070.348000.000000.00106includedHepG2CDC40
    SEEPB41ENSG00000159023.14chr1+2938510029385157293796152937982429386933293869960.218000.000380.08780includedHepG2CDC40
    SEHNRNPDENSG00000138668.14chr4-8329268083292737832798118327997383294598832951090.294000.000010.00409includedHepG2CDC40
    SER3HDM1ENSG00000048991.12chr2+1363991051363993601363964651363966921364029481364030970.211000.000000.00001includedHepG2CDC40
    SEENTPD5ENSG00000187097.8chr14-7443958674439727744385547443861174440579744406810.134000.000000.00017includedHepG2CDC40
    SEPTK2ENSG00000169398.15chr8-1416798251416798341416783671416785231416843961416845030.083000.000170.04978includedHepG2CDC40
    SEHNRNPCENSG00000092199.13chr14-2173182521731988217314692173149521737456217375650.087000.000280.07179includedHepG2CDC40
    SESEC24BENSG00000138802.7chr4+1104028321104029371103941591103943421104124821104125630.235000.000000.00148includedHepG2CDC40
    SEU2AF1ENSG00000160201.7chr21-4452056244520629445158034451585344521475445215420.155000.000010.00384includedHepG2CDC40
    SESMEK2ENSG00000138041.11chr2-5581864055818831558160145581609255825551558261750.061000.000040.01637includedHepG2CDC40
    SEMFFENSG00000168958.15chr2+2281943212281944992281933932281935052281953412281954050.083000.000070.02768includedHepG2CDC40
    SESNHG14ENSG00000224078.8chr15+2533375425333888253326132533274625334760253350130.424000.000040.01685includedHepG2CDC40
    SEDENND5AENSG00000184014.3chr11-9198318919844991921739192324919967891999130.082000.000000.00041includedHepG2CDC40
    SEPEG3ENSG00000198300.8chr19-5733775557337831573356535733579557347385573474720.083000.000100.03577includedHepG2CDC40
    SERPS6KA3ENSG00000177189.8chrX-2025868620258723202528752025293220284681202847600.054000.000250.06679includedHepG2CDC40
    SECD99P1ENSG00000223773.2chrX+2540730254077525374692537538254142525414940.525000.000090.03074includedHepG2CDC40
    SECLASP1ENSG00000074054.13chr2-1221451631221452301221446971221448041221453381221456520.061000.000310.07531includedHepG2CDC40
    SEEIF4A2ENSG00000156976.10chr3+1865060981865062091865056161865056711865069131865070800.096000.000000.00000includedHepG2CDC40
    SEZNF706ENSG00000120963.7chr8-1022145601022146751022138421022139711022176621022179600.107000.000000.00010includedHepG2CDC40
    SETTC21BENSG00000123607.10chr2-1667898761667899691667894821667895671667975361667976940.072000.000290.07312includedHepG2CDC40
    SERPL17ENSG00000265681.2chr18-4701810547018203470179014701795447018827470188780.060000.000000.00148includedHepG2CDC40
    SENFAT5ENSG00000102908.16chr16+6968041969680481696602046966043169680930696814890.177000.000010.00755includedHepG2CDC40
    SEMAP4K4ENSG00000071054.11chr2+1024802821024805131024772861024774481024813911024814980.292000.000110.03778includedHepG2CDC40
    SEPTPRMENSG00000173482.12chr18+8371757837180883709308371004837604383761980.258000.000180.05166includedHepG2CDC40
    SEADAM9ENSG00000168615.7chr8+3893366538933794389288163892892238934746389349300.053000.000020.00968includedHepG2CDC40
    SETAB3ENSG00000157625.11chrX-3086466730864761308610823086116630870894308710550.070000.000170.04978includedHepG2CDC40
    SEITGB1BP1ENSG00000119185.8chr2-9558754955886195523979552534956350195635590.362000.000240.06577includedHepG2CDC40
    SEPFKFB4ENSG00000114268.7chr3-4858596448586092485810124858107948587296485873280.329000.000020.01024includedHepG2CDC40
    SECNKSR3ENSG00000153721.13chr6-1547357141547358991547354321547355571547436391547437860.109000.000000.00000includedHepG2CDC40
    SERSRC2ENSG00000111011.13chr12-1229983131229984211229956551229957351229996511229997740.052000.000020.00968includedHepG2CDC40
    SESTK40ENSG00000196182.6chr1-3683824936838375368334613683368536851323368514770.194000.000360.08439includedHepG2CDC40
    SESRSF1ENSG00000136450.8chr17-5608277456082961560819485608240256083161560833340.229000.000100.03618includedHepG2CDC40
    SEAPLP2ENSG00000084234.12chr11+1299935061299936741299921991299924081299965941299967250.077000.000330.07880includedHepG2CDC40
    SECOMMD2ENSG00000114744.4chr3-1494680431494681691494591761494595051494684641494686380.060000.000010.00419includedHepG2CDC40
    SEFNDC3BENSG00000075420.8chr3+1719796581719798731719690491719693311720037151720037740.069000.000020.00968includedHepG2CDC40
    SEAPTXENSG00000137074.14chr9-329880803298812732987541329877293298975632990086-0.198000.000380.08757excludedHepG2CDC40
    SEMBIPENSG00000151332.14chr14-367811643678123036780778367809313678371736783814-0.095000.000030.01334excludedHepG2CDC40
    SESERPINA11ENSG00000186910.3chr14-949126679491278594909414949095629491446894914597-0.220000.000070.02768excludedHepG2CDC40
    SERAD23BENSG00000119318.8chr9+110064315110064395110045559110045976110068659110068928-0.051000.000010.00416excludedHepG2CDC40
    SECHEK2ENSG00000183765.16chr22-290994922909955429095825290959252910599329106047-0.147000.000030.01286excludedHepG2CDC40
    SEARIH2ENSG00000177479.15chr3+489621504896240448960180489602444896489448965246-0.151000.000090.03261excludedHepG2CDC40
    SEWNK1ENSG00000060237.12chr12+977031978270971248971436987377987527-0.138000.000040.01576excludedHepG2CDC40
    SEZNF207ENSG00000010244.12chr17+306936833069377630692348306925063069477530694962-0.151000.000000.00000excludedHepG2CDC40
    SEALKBH3ENSG00000166199.8chr11+439135904391367943911274439113784392306543923275-0.199000.000120.03778excludedHepG2CDC40
    SEANKHD1ENSG00000131503.16chr5+139914946139915123139907768139909381139916922139917174-0.116000.000020.00968excludedHepG2CDC40
    SESDHAP1ENSG00000185485.10chr3-195713389195713475195712497195712660195717060195717187-0.641000.000380.08780excludedHepG2CDC40
    SEUBE2V1ENSG00000244687.7chr20-487130194871335748700719487007914872964348729670-0.064000.000000.00044excludedHepG2CDC40
    SEAHSGENSG00000145192.8chr3+186336285186336426186334975186335139186338374186339107-0.180000.000270.07024excludedHepG2CDC40
    SEHDAC11ENSG00000163517.10chr3+135433701354343313524963135250641354438313544480-0.177000.000080.03013excludedHepG2CDC40
    SEDDX39BENSG00000198563.9chr6-315069233150705131506539315066323150809831508441-0.131000.000000.00028excludedHepG2CDC40
    SEZNF266ENSG00000174652.13chr19-952632995264189523273952539695285039528584-0.371000.000310.07608excludedHepG2CDC40
    SESNRPCENSG00000124562.5chr6+347256253472573134725182347253283473037134730480-0.051000.000000.00001excludedHepG2CDC40
    SEDOCK5ENSG00000147459.13chr8+252257072522576625224385252244862522608625226203-0.365000.000140.04463excludedHepG2CDC40
    SEGARTENSG00000159131.12chr21-349037943490386334903092349031903490465034904762-0.073000.000000.00000excludedHepG2CDC40
    SERP11-729L2.2ENSG00000267699.2chr18+485756644857569448575055485752304858115048581363-0.109000.000080.03013excludedHepG2CDC40
    SETRPC4APENSG00000100991.7chr20-336323073363251533622925336231113363766833637797-0.065000.000030.01477excludedHepG2CDC40
    SEEIF3HENSG00000147677.6chr8-117738254117738411117658709117658842117767904117768060-0.107000.000020.01034excludedHepG2CDC40
    SEMGST1ENSG00000008394.8chr12+165105381651063316507164165073121651672816517343-0.055000.000280.07179excludedHepG2CDC40
    SECCAR1ENSG00000060339.9chr10+705256447052583670517050705171347053096270531058-0.087000.000000.00118excludedHepG2CDC40
    SEEAPPENSG00000129518.4chr14-349985633499868134993902349940133500264935002745-0.096000.000010.00661excludedHepG2CDC40
    SEMKNK2ENSG00000099875.10chr19-204660220466902046365204646720507992050946-0.126000.000000.00044excludedHepG2CDC40
    SEABI1ENSG00000136754.12chr10-270479902704816727040526270407122705414627054247-0.058000.000190.05340excludedHepG2CDC40
    SECSE1LENSG00000124207.12chr20+477018194770192347700562477006994770578347705934-0.094000.000000.00026excludedHepG2CDC40
    SESPRY4ENSG00000187678.8chr5-141696625141696703141694673141694720141704408141704566-0.206000.000250.06679excludedHepG2CDC40
    SEARPC1BENSG00000130429.8chr7+989749809897506298972352989724049898332498983401-0.202000.000070.02741excludedHepG2CDC40
    SETNRC6AENSG00000090905.13chr16+247620462476213424741573247416212478825324788679-0.147000.000000.00153excludedHepG2CDC40
    SEMAP2K2ENSG00000126934.9chr19-409727640973414094450409544741010164101045-0.199000.000000.00182excludedHepG2CDC40
    SERP11-206L10.11ENSG00000228794.4chr1+784863784982783033783186787306787367-0.849000.000070.02768excludedHepG2CDC40
    SESORL1ENSG00000137642.8chr11+121428022121428114121425750121426027121429299121429546-0.172000.000170.04978excludedHepG2CDC40
    SECARM1ENSG00000142453.7chr19+110320501103211911031725110318031103229011033448-0.201000.000260.06762excludedHepG2CDC40
    A3SSHSPBP1ENSG00000133265.6chr19-5579076655791073557907665579107055791402557914760.087000.000000.00433longerHepG2CDC40
    A3SSSNX5ENSG00000089006.12chr20-1793463917934867179346391793476117936008179361420.051000.000000.00361longerHepG2CDC40
    A3SSTAF1DENSG00000166012.10chr11-9346651593466585934665159346656393467790934678260.117000.000160.08192longerHepG2CDC40
    A3SSAUP1ENSG00000115307.12chr2-7475406774754248747540677475418674754374747544900.111000.000180.08319longerHepG2CDC40
    A3SSHNRNPUL1ENSG00000105323.12chr19+4181153241811772418115504181177241809876418101660.149000.000000.00011longerHepG2CDC40
    A3SSEDF1ENSG00000107223.8chr9-1397565701397569481397565701397567971397573571397574510.105000.000060.03630longerHepG2CDC40
    A3SSRPLP0ENSG00000089157.11chr12-1206385321206386941206385321206386341206388851206390140.059000.000000.00433longerHepG2CDC40
    A3SSAPOA2ENSG00000158874.7chr1-1611931391611932471611931391611932151611933841611934210.096000.000050.03296longerHepG2CDC40
    A3SSBAG6ENSG00000204463.8chr6-3160842131608517316084213160848131608568316087150.108000.000060.03694longerHepG2CDC40
    A3SSNFE2L2ENSG00000116044.11chr2-1780965321780967581780965321780967361780971191780973110.054000.000170.08192longerHepG2CDC40
    A3SSDAZAP1ENSG00000071626.12chr19+142114614212571421149142125714186641418730-0.137000.000000.00083shorterHepG2CDC40
    A3SSGABPB1ENSG00000104064.12chr15-505816795058186550581679505818625059298550593099-0.338000.000000.00000shorterHepG2CDC40
    A3SSSLIRPENSG00000119705.5chr14+781838387818394178183844781839417818211478182222-0.055000.000000.00012shorterHepG2CDC40
    A3SSPPP1CCENSG00000186298.7chr12-111157787111158036111157787111158009111158909111158970-0.136000.000080.04331shorterHepG2CDC40
    A3SSGSPT1ENSG00000103342.8chr16-119904141199064211990414119906391199169611991738-0.128000.000000.00009shorterHepG2CDC40
    A3SSCENPVENSG00000166582.5chr17-162519291625264716251929162519991625324416253343-0.246000.000220.09103shorterHepG2CDC40





    2 RBPs can affect the splicing of CDC40 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SECDC40ENSG00000168438.10chr6+1105329851105330621105319091105320061105333351105334750.090000.000130.00381includedK562SRSF1
    SECDC40ENSG00000168438.10chr6+1105329851105330621105319091105320061105333351105334750.064000.000030.00051includedK562AQR
    SECDC40ENSG00000168438.10chr6+110534288110534363110533335110533475110536488110536534-0.065000.011540.09098excludedK562AQR
    SECDC40ENSG00000168438.10chr6+110522760110522890110514384110514471110528708110528792-0.157000.000170.00271excludedK562AQR
    A3SSCDC40ENSG00000168438.10chr6+1105499981105501791105500341105501791105473691105474460.145000.000000.00000longerK562AQR

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    No autoregularoty alternative splicing events between protein CDC40 and its RNA.