KDM4B

General Information

Gene Name : KDM4B
Gene ID : ENSG00000127663.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: KDM4B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	KDM4B	ENSG00000127663.14	1.94	5.18	3.56	ENCSR000AEF
HepG2	KDM4B	ENSG00000127663.14	7.40	2.10	4.75	ENCSR985KAT
K562	KDM4B	ENSG00000127663.14	7.56	3.46	5.51	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for KDM4B is not avaliable on ENCORE database.

Proteins bound to RNA

KDM4B RNA is bound by 72 proteins.

CanvasJS.com

eCLIP assay for KDM4B is not avaliable on ENCORE database.

72 proteins are bound to KDM4B RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	5140408	5140440	+	3'-UTR,intron-Distal	7.13554	400.00000	HepG2	DKC1
chr19	5140440	5140455	+	3'-UTR,intron-Distal	7.39439	400.00000	HepG2	DKC1
chr19	5140455	5140496	+	3'-UTR,intron-Distal	7.95504	114.35663	HepG2	DKC1
chr19	5153301	5153433	+	3'-UTR	5.28966	53.27230	K562	UPF1
chr19	5000233	5000354	+	intron-Distal	5.98294	51.16318	K562	AGGF1
chr19	5082333	5082370	+	intron-Proximal	5.38628	50.62951	K562	SF3B4
chr19	5151773	5151888	+	3'-UTR	4.92950	49.08793	K562	PUM2
chr19	5153182	5153301	+	3'-UTR	6.91273	49.03330	K562	UPF1
chr19	5000354	5000446	+	intron-Distal	5.63348	47.79299	K562	AGGF1
chr19	5082330	5082333	+	intron-Proximal	5.11481	35.89429	K562	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 940 entries

eCLIP assay for KDM4B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for KDM4B is not available on ENCORE database.
105 RBPs can affect the levels of KDM4B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for KDM4B is not available on ENCORE database.

105 RBPs can affect the gene expression of KDM4B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
KDM4B	ENSG00000127663.10	433.92320	1378.97110	-1.66810	30.23230	29.03940	HepG2	SRSF1
KDM4B	ENSG00000127663.10	471.29820	1147.72070	-1.28410	29.56030	27.17860	K562	SYNCRIP
KDM4B	ENSG00000127663.10	537.31410	1139.48780	-1.08450	27.36310	25.78270	HepG2	UTP3
KDM4B	ENSG00000127663.10	379.89570	1239.66630	-1.70630	26.44430	24.94240	HepG2	TAF15
KDM4B	ENSG00000127663.10	1067.90720	522.05380	1.03240	25.88240	24.37620	HepG2	TRIM56
KDM4B	ENSG00000127663.10	724.71070	1298.05240	-0.84090	23.80080	22.59060	HepG2	ZNF622
KDM4B	ENSG00000127663.10	1125.85950	511.52330	1.13810	19.19830	17.83250	HepG2	BOP1
KDM4B	ENSG00000127663.10	719.62150	1286.42080	-0.83810	18.77470	17.37170	HepG2	DKC1
KDM4B	ENSG00000127663.10	716.49400	1726.71500	-1.26900	17.59110	16.17760	K562	FXR1
KDM4B	ENSG00000127663.10	883.98560	474.21030	0.89840	16.80190	15.41050	HepG2	SAFB2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 118 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for KDM4B is not available on ENCORE database.

7 RBPs can affect the splicing of KDM4B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	KDM4B	ENSG00000127663.10	chr19	+	5071020	5071070	5077377	5077481	5047486	5047680	5082377	5082448	-0.26800	0.00002	0.00398	2included	K562	PUM1
SE	KDM4B	ENSG00000127663.10	chr19	+	5119128	5119230			5110632	5110829	5119663	5119863	-0.23800	0.00058	0.06509	excluded	HepG2	SSB
SE	KDM4B	ENSG00000127663.10	chr19	+	5112429	5112647			5110632	5110829	5119128	5119230	0.06600	0.00070	0.02305	included	HepG2	SF3A3
SE	KDM4B	ENSG00000127663.10	chr19	+	5071020	5071070			5047486	5047680	5077377	5077481	0.19000	0.00240	0.07330	included	K562	TARDBP
SE	KDM4B	ENSG00000127663.10	chr19	+	5032876	5033042			5016267	5016350	5039846	5040022	-0.25900	0.00453	0.07523	excluded	K562	U2AF1
SE	KDM4B	ENSG00000127663.10	chr19	+	5032876	5033042			5016267	5016350	5039846	5040022	-0.23200	0.00532	0.07745	excluded	K562	SF3B4
SE	KDM4B	ENSG00000127663.10	chr19	+	5032876	5033042			5016267	5016350	5039846	5040022	-0.06100	0.00567	0.06841	excluded	K562	PUS1

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

KDM4B

General Information

Functions

Localization

Domains (AlphaFold: KDM4B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for KDM4B is not avaliable on ENCORE database.

72 proteins are bound to KDM4B RNA:

eCLIP assay for KDM4B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for KDM4B is not available on ENCORE database.

105 RBPs can affect the gene expression of KDM4B :

The Knockdown/knockout RNA-Seq assay for KDM4B is not available on ENCORE database.

7 RBPs can affect the splicing of KDM4B :

The Knockdown/knockout RNA-Seq assay for KDM4B is not avaliable on ENCORE database.