PTK2

General Information

Gene Name : PTK2
Gene ID : ENSG00000169398.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PTK2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PTK2	ENSG00000169398.19	39.82	29.63	34.73	ENCSR000AEF
HepG2	PTK2	ENSG00000169398.19	43.90	51.71	47.80	ENCSR985KAT
K562	PTK2	ENSG00000169398.19	47.24	44.98	46.11	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PTK2 is not avaliable on ENCORE database.

Proteins bound to RNA

PTK2 RNA is bound by 56 proteins.

CanvasJS.com

eCLIP assay for PTK2 is not avaliable on ENCORE database.

56 proteins are bound to PTK2 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	141742706	141742726	-	intron-Distal	8.68394	95.85984	K562	DGCR8
chr8	141742697	141742706	-	intron-Distal	8.66099	94.28561	K562	DGCR8
chr8	141742687	141742697	-	intron-Distal	8.36463	78.55045	K562	DGCR8
chr8	141742704	141742743	-	intron-Distal	8.27424	77.23043	HepG2	DGCR8
chr8	141742683	141742687	-	intron-Distal	8.27606	73.43983	K562	DGCR8
chr8	141895640	141895732	-	intron-Distal	6.18165	70.48004	HepG2	QKI
chr8	141742683	141742704	-	intron-Distal	7.90147	58.27396	HepG2	DGCR8
chr8	141744979	141745119	-	intron-Distal,intron-Proximal	5.92697	41.51411	HepG2	QKI
chr8	141895764	141895869	-	intron-Distal	7.19583	40.76612	HepG2	QKI
chr8	141684356	141684419	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.48529	37.21301	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 464 entries

eCLIP assay for PTK2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PTK2 is not available on ENCORE database.
64 RBPs can affect the levels of PTK2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PTK2 is not available on ENCORE database.

64 RBPs can affect the gene expression of PTK2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PTK2	ENSG00000169398.15	1310.81450	2812.26210	-1.10130	27.83710	26.21360	HepG2	PUF60
PTK2	ENSG00000169398.15	1195.58510	2219.55390	-0.89260	20.81810	19.06970	HepG2	CALR
PTK2	ENSG00000169398.15	1473.01760	2263.49470	-0.61980	18.84190	17.44580	HepG2	CKAP4
PTK2	ENSG00000169398.15	1336.34230	2334.93960	-0.80510	15.17700	13.44850	HepG2	MSI2
PTK2	ENSG00000169398.15	1018.30770	1862.64150	-0.87120	14.22460	12.78650	HepG2	TARDBP
PTK2	ENSG00000169398.15	2618.85180	3794.07350	-0.53480	13.76650	12.58920	HepG2	ETF1
PTK2	ENSG00000169398.15	1551.41660	2274.62700	-0.55200	12.32340	10.85960	HepG2	AKAP8L
PTK2	ENSG00000169398.15	1042.08270	1947.24420	-0.90200	10.38790	9.16650	HepG2	DDX21
PTK2	ENSG00000169398.15	1497.56460	2304.84170	-0.62200	10.12210	8.78350	K562	SRSF1
PTK2	ENSG00000169398.15	1427.81770	1984.22790	-0.47480	9.32850	8.26490	HepG2	HNRNPU
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 72 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PTK2 is not available on ENCORE database.

41 RBPs can affect the splicing of PTK2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PTK2	ENSG00000169398.15	chr8	-	141697054	141697228	141696730	141696793	141710989	141711121	0.12600	0.00003	included	K562	SRSF1
SE	PTK2	ENSG00000169398.15	chr8	-	141679825	141679834	141678367	141678523	141684396	141684503	0.13300	0.00007	included	HepG2	RBM22
SE	PTK2	ENSG00000169398.15	chr8	-	141779673	141779691	141774332	141774389	141799572	141799625	0.49000	0.00000	included	HepG2	U2AF1
SE	PTK2	ENSG00000169398.15	chr8	-	141679825	141679834	141678367	141678523	141684396	141684503	0.47900	0.00000	included	HepG2	U2AF1
SE	PTK2	ENSG00000169398.15	chr8	-	141935759	141935848	141900641	141900868	142011223	142011257	-0.16700	0.00001	excluded	K562	AKAP8L
SE	PTK2	ENSG00000169398.15	chr8	-	141679825	141679834	141678367	141678523	141684396	141684503	0.18100	0.00000	included	HepG2	QKI
SE	PTK2	ENSG00000169398.15	chr8	-	141779673	141779691	141774332	141774389	141799572	141799625	0.58800	0.00000	included	HepG2	U2AF2
SE	PTK2	ENSG00000169398.15	chr8	-	141679825	141679834	141678367	141678523	141684396	141684503	0.43200	0.00000	included	HepG2	U2AF2
SE	PTK2	ENSG00000169398.15	chr8	-	141935759	141935848	141900641	141900868	142011223	142011257	-0.17200	0.00000	excluded	K562	PUS1
SE	PTK2	ENSG00000169398.15	chr8	-	141958764	141958822	141900641	141900868	142011223	142011263	-0.19600	0.00169	excluded	K562	NSUN2

Showing 1 to 10 of 89 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PTK2

General Information

Functions

Localization

Domains (AlphaFold: PTK2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PTK2 is not avaliable on ENCORE database.

56 proteins are bound to PTK2 RNA:

eCLIP assay for PTK2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PTK2 is not available on ENCORE database.

64 RBPs can affect the gene expression of PTK2 :

The Knockdown/knockout RNA-Seq assay for PTK2 is not available on ENCORE database.

41 RBPs can affect the splicing of PTK2 :

The Knockdown/knockout RNA-Seq assay for PTK2 is not avaliable on ENCORE database.