SQLE

General Information

Gene Name : SQLE
Gene ID : ENSG00000104549.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SQLE)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SQLE	ENSG00000104549.11	74.73	60.46	67.59	ENCSR000AEF
HepG2	SQLE	ENSG00000104549.11	78.43	166.93	122.68	ENCSR985KAT
K562	SQLE	ENSG00000104549.11	89.83	102.27	96.05	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SQLE is not avaliable on ENCORE database.

Proteins bound to RNA

SQLE RNA is bound by 40 proteins.

CanvasJS.com

eCLIP assay for SQLE is not avaliable on ENCORE database.

40 proteins are bound to SQLE RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	126010978	126011029	+	5'-UTR,intron-Distal,intron-Proximal	5.92089	400.00000	HepG2	DDX3X
chr8	126011078	126011102	+	5'-UTR,intron-Distal	5.51050	400.00000	HepG2	DDX3X
chr8	126010787	126010842	+	5'-UTR	5.92462	400.00000	HepG2	DDX3X
chr8	126010861	126010900	+	5'-UTR,intron-Proximal	6.19903	400.00000	HepG2	DDX3X
chr8	126011034	126011078	+	5'-UTR,intron-Distal	5.80856	400.00000	HepG2	DDX3X
chr8	126010911	126010968	+	5'-UTR,intron-Distal,intron-Proximal	6.77073	400.00000	HepG2	DDX3X
chr8	126011199	126011233	+	5'-UTR,intron-Distal	5.87345	400.00000	HepG2	DDX3X
chr8	126010842	126010861	+	5'-UTR,CDS,intron-Proximal	6.03862	400.00000	HepG2	DDX3X
chr8	126011179	126011199	+	5'-UTR,intron-Distal	4.89719	400.00000	HepG2	DDX3X
chr8	126011358	126011402	+	5'-UTR,intron-Distal	5.00078	400.00000	HepG2	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 175 entries

eCLIP assay for SQLE is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SQLE is not available on ENCORE database.
168 RBPs can affect the levels of SQLE.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SQLE is not available on ENCORE database.

168 RBPs can affect the gene expression of SQLE :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SQLE	ENSG00000104549.7	5088.62780	16281.39180	-1.67790	144.61160	142.28180	HepG2	NELFE
SQLE	ENSG00000104549.7	2803.67630	6963.66110	-1.31250	102.06010	99.61500	HepG2	PUM1
SQLE	ENSG00000104549.7	6480.89110	15231.73190	-1.23280	93.49760	91.03000	HepG2	SF3B4
SQLE	ENSG00000104549.7	6269.99410	15163.33760	-1.27410	90.78460	88.34070	HepG2	RECQL
SQLE	ENSG00000104549.7	5787.57900	12933.92220	-1.16010	82.21060	80.08150	HepG2	SRSF9
SQLE	ENSG00000104549.7	6528.19970	14629.36590	-1.16410	81.57910	79.59200	HepG2	PTBP1
SQLE	ENSG00000104549.7	2353.01440	6313.61190	-1.42400	81.80040	79.04360	HepG2	HNRNPL
SQLE	ENSG00000104549.7	7070.03450	15898.35540	-1.16910	74.85500	73.16990	HepG2	SRSF1
SQLE	ENSG00000104549.7	2439.75250	7046.39340	-1.53020	66.11950	63.37730	K562	HNRNPC
SQLE	ENSG00000104549.7	6032.08850	14289.29880	-1.24420	60.59400	58.39370	HepG2	TAF15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 211 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SQLE is not available on ENCORE database.

4 RBPs can affect the splicing of SQLE :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	SQLE	ENSG00000104549.7	chr8	+	126019607	126019729			126019632	126019729	126017711	126017947	0.07200	0.00000	0.00000	longer	K562	AQR
MXE	SQLE	ENSG00000104549.7	chr8	+	126030872	126030969	126033025	126033113	126030300	126030443	126033994	126034525	-0.12900	0.00001	0.00037	2included	HepG2	HNRNPUL1
MXE	SQLE	ENSG00000104549.7	chr8	+	126030872	126030969	126033025	126033113	126030300	126030443	126033994	126034525	-0.11500	0.00012	0.00131	2included	HepG2	U2AF2
MXE	SQLE	ENSG00000104549.7	chr8	+	126030872	126030969	126033025	126033113	126030300	126030443	126033994	126034525	-0.13800	0.00381	0.04555	2included	K562	DROSHA
MXE	SQLE	ENSG00000104549.7	chr8	+	126030872	126030969	126033025	126033113	126030300	126030443	126033994	126034525	-0.14000	0.00738	0.07970	2included	K562	HNRNPUL1

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SQLE

General Information

Functions

Localization

Domains (AlphaFold: SQLE)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SQLE is not avaliable on ENCORE database.

40 proteins are bound to SQLE RNA:

eCLIP assay for SQLE is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SQLE is not available on ENCORE database.

168 RBPs can affect the gene expression of SQLE :

The Knockdown/knockout RNA-Seq assay for SQLE is not available on ENCORE database.

4 RBPs can affect the splicing of SQLE :

The Knockdown/knockout RNA-Seq assay for SQLE is not avaliable on ENCORE database.