SNX5

General Information

Gene Name : SNX5
Gene ID : ENSG00000089006.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SNX5)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SNX5	ENSG00000089006.16	228.24	204.83	216.54	ENCSR000AEF
HepG2	SNX5	ENSG00000089006.16	391.20	728.72	559.96	ENCSR985KAT
K562	SNX5	ENSG00000089006.16	108.42	107.34	107.88	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SNX5 is not avaliable on ENCORE database.

Proteins bound to RNA

SNX5 RNA is bound by 53 proteins.

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eCLIP assay for SNX5 is not avaliable on ENCORE database.

53 proteins are bound to SNX5 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr20	17943465	17943477	-	intron-Distal	4.57018	400.00000	HepG2	NIP7
chr20	17943485	17943502	-	intron-Distal	3.57531	400.00000	HepG2	DKC1
chr20	17943519	17943575	-	intron-Distal	3.61202	400.00000	K562	AATF
chr20	17943466	17943471	-	intron-Distal	4.69425	400.00000	K562	AATF
chr20	17943470	17943475	-	intron-Distal	3.42033	400.00000	HepG2	NOLC1
chr20	17943451	17943462	-	intron-Distal	3.88071	400.00000	K562	AATF
chr20	17943473	17943485	-	intron-Distal	3.59020	400.00000	HepG2	DKC1
chr20	17943467	17943470	-	intron-Distal	3.77509	400.00000	HepG2	DKC1
chr20	17943510	17943516	-	intron-Distal	4.95819	400.00000	HepG2	NIP7
chr20	17943461	17943465	-	intron-Distal	3.06891	400.00000	HepG2	NIP7
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 231 entries

eCLIP assay for SNX5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SNX5 is not available on ENCORE database.
136 RBPs can affect the levels of SNX5.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SNX5 is not available on ENCORE database.

136 RBPs can affect the gene expression of SNX5 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SNX5	ENSG00000089006.12	10823.34390	25932.57040	-1.26060	127.10630	125.01220	HepG2	SRFBP1
SNX5	ENSG00000089006.12	10894.04490	22960.21600	-1.07560	60.36090	58.56790	HepG2	RBM22
SNX5	ENSG00000089006.12	12057.42290	22515.35130	-0.90100	59.35610	57.74650	HepG2	SSB
SNX5	ENSG00000089006.12	4563.10810	11032.26850	-1.27360	59.00270	57.25840	HepG2	TIAL1
SNX5	ENSG00000089006.12	7139.16980	11833.07060	-0.72900	51.04330	49.45480	HepG2	ZNF622
SNX5	ENSG00000089006.12	15114.81150	27470.55430	-0.86190	49.21040	47.26380	HepG2	ETF1
SNX5	ENSG00000089006.12	6921.73300	16045.34290	-1.21290	39.76420	37.87870	HepG2	RPLP0
SNX5	ENSG00000089006.12	6349.65730	10759.23000	-0.76080	39.32240	37.33670	HepG2	UPF1
SNX5	ENSG00000089006.12	8497.00600	14633.34490	-0.78420	39.11730	37.13240	HepG2	SRSF7
SNX5	ENSG00000089006.12	5372.93990	15690.43460	-1.54610	39.27390	37.09330	HepG2	NCBP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 166 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SNX5 is not available on ENCORE database.

30 RBPs can affect the splicing of SNX5 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	SNX5	ENSG00000089006.12	chr20	-	17949017	17949100	17937576	17937681	17949342	17949623	-0.13400	0.00001	excluded	HepG2	U2AF1
SE	SNX5	ENSG00000089006.12	chr20	-	17936008	17936119	17934639	17934761	17937576	17937681	-0.09900	0.00000	excluded	HepG2	U2AF1
SE	SNX5	ENSG00000089006.12	chr20	-	17936008	17936119	17934639	17934761	17937576	17937681	-0.05400	0.00010	excluded	HepG2	U2AF2
SE	SNX5	ENSG00000089006.12	chr20	-	17929707	17929747	17929533	17929620	17930775	17930851	-0.05400	0.00001	excluded	K562	AQR
SE	SNX5	ENSG00000089006.12	chr20	-	17931664	17931971	17930934	17931040	17932143	17932239	0.09400	0.00000	included	K562	HNRNPL
SE	SNX5	ENSG00000089006.12	chr20	-	17949017	17949100	17937576	17937681	17949342	17949623	-0.12800	0.00009	excluded	HepG2	SRSF1
SE	SNX5	ENSG00000089006.12	chr20	-	17936008	17936142	17934639	17934761	17937576	17937681	-0.07100	0.00006	excluded	HepG2	SRSF1
A3SS	SNX5	ENSG00000089006.12	chr20	-	17934639	17934867	17934639	17934761	17936008	17936142	0.09000	0.00000	longer	HepG2	SF3A3
A3SS	SNX5	ENSG00000089006.12	chr20	-	17934639	17934867	17934639	17934761	17936008	17936142	0.13500	0.00000	longer	K562	U2AF2
A3SS	SNX5	ENSG00000089006.12	chr20	-	17934639	17934867	17934639	17934761	17936008	17936119	0.06300	0.00002	longer	K562	SF3B4

Showing 1 to 10 of 74 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SNX5

General Information

Functions

Localization

Domains (AlphaFold: SNX5)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SNX5 is not avaliable on ENCORE database.

53 proteins are bound to SNX5 RNA:

eCLIP assay for SNX5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SNX5 is not available on ENCORE database.

136 RBPs can affect the gene expression of SNX5 :

The Knockdown/knockout RNA-Seq assay for SNX5 is not available on ENCORE database.

30 RBPs can affect the splicing of SNX5 :

The Knockdown/knockout RNA-Seq assay for SNX5 is not avaliable on ENCORE database.