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CDC40
eCLIP
in HepG2
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
556
556-control
Exp_UID
556
556
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR815VVI
ENCSR828ALT
ENCODE_alias
gene-yeo:556
gene-yeo:556-control
RBP
CDC40
CDC40
Cell_Line
HepG2
HepG2
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB127ICL
ENCAB127ICL
Antibody
A303-699A
A303-699A
Lot_num
1
1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
242
268
Replicate Information
Rep_UID
556_INPUT
556_01
556_02
Exp UID
556
556
556
Replicate_type
control
rep1
rep2
ENCODE_ACCESSION
ENCLB123PMR
ENCLB148JZM
ENCLB514ZXV
ENCODE_alias
gene-yeo:556_INPUT
gene-yeo:556_01
gene-yeo:556_02
Biosample Name
HepG2_081815
HepG2_081815
HepG2_111915
Biosample_ENCODE_Accession
ENCBS881CIF
ENCBS881CIF
ENCBS492SDY
Biosample_ENCODE_Alias
gene-yeo:HepG2_081815
gene-yeo:HepG2_081815
gene-yeo:HepG2_111915
Cell_Line
HepG2
HepG2
HepG2
Culture_Start_Date
2015-08-18
2015-08-18
2015-11-19
Culture_End_Date
2015-09-10
2015-09-10
2015-12-10
Passage
4
4
4
QC Stats
Experiment QC
556
556-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
556_INPUT
556_01
556_02
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
556_INPUT
556_01
556_02
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
none
A04
A03
inline_barcode_2
none
F05
G07
i5_barcode
503
504
504
i7_barcode
701
702
702
Sequencing Information
Rep_UID
556_INPUT
556_01
556_02
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/556.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
556
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
556.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
556
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=556)
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