ABI1

General Information

Gene Name : ABI1
Gene ID : ENSG00000136754.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ABI1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ABI1	ENSG00000136754.17	48.39	42.90	45.64	ENCSR000AEF
HepG2	ABI1	ENSG00000136754.17	15.23	18.78	17.01	ENCSR985KAT
K562	ABI1	ENSG00000136754.17	29.32	32.41	30.86	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ABI1 is not avaliable on ENCORE database.

Proteins bound to RNA

ABI1 RNA is bound by 24 proteins.

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eCLIP assay for ABI1 is not avaliable on ENCORE database.

24 proteins are bound to ABI1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	27054513	27054595	-	intron-Distal	5.63560	21.61598	HepG2	PCBP2
chr10	27112154	27112235	-	CDS,intron-Distal,intron-Proximal	3.12328	12.05468	K562	ZNF622
chr10	27065965	27066026	-	CDS,intron-Distal,intron-Proximal	5.66103	11.80896	HepG2	PRPF8
chr10	27044584	27044671	-	CDS,intron-Distal,intron-Proximal	3.52355	11.80824	HepG2	U2AF2
chr10	27099802	27099880	-	intron-Distal	4.25382	11.64729	HepG2	PTBP1
chr10	27149678	27149793	-	CDS,intron-Distal,intron-Proximal	3.66839	9.99051	K562	UCHL5
chr10	27112122	27112237	-	CDS,intron-Distal,intron-Proximal	4.10288	9.37631	HepG2	BCLAF1
chr10	27051517	27051574	-	intron-Distal	3.69579	9.31101	K562	KHSRP
chr10	27097730	27097844	-	intron-Distal	4.69519	9.27589	HepG2	PCBP2
chr10	27044671	27044728	-	intron-Distal,intron-Proximal	3.95729	9.18134	HepG2	U2AF2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 53 entries

eCLIP assay for ABI1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ABI1 is not available on ENCORE database.
53 RBPs can affect the levels of ABI1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ABI1 is not available on ENCORE database.

53 RBPs can affect the gene expression of ABI1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ABI1	ENSG00000136754.12	3776.35160	1785.85920	1.08030	23.68380	22.10880	K562	PUS1
ABI1	ENSG00000136754.12	472.67760	743.91940	-0.65430	10.38600	9.21930	HepG2	DNAJC2
ABI1	ENSG00000136754.12	1765.32170	1259.22880	0.48730	9.79550	9.00990	HepG2	SRFBP1
ABI1	ENSG00000136754.12	526.11620	820.87200	-0.64180	9.62480	8.67110	HepG2	TRIM56
ABI1	ENSG00000136754.12	1297.76620	898.43370	0.53040	8.65120	7.92110	HepG2	SRSF1
ABI1	ENSG00000136754.12	1104.31330	1535.95330	-0.47600	8.36010	7.02500	K562	MTPAP
ABI1	ENSG00000136754.12	2329.28390	1730.44040	0.42860	7.72610	6.84530	K562	AGGF1
ABI1	ENSG00000136754.12	2434.41760	1739.90030	0.48450	7.79370	6.82860	K562	RBM15
ABI1	ENSG00000136754.12	1411.27080	2113.42400	-0.58260	7.74350	6.17880	K562	ZC3H8
ABI1	ENSG00000136754.12	604.76560	1043.44020	-0.78690	7.41450	6.01730	HepG2	UBE2L3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 57 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ABI1 is not available on ENCORE database.

47 RBPs can affect the splicing of ABI1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	ABI1	ENSG00000136754.12	chr10	-	27060003	27060018	27059173	27059274	27065993	27066170	-0.18100	0.00004	excluded	K562	SF3B4
SE	ABI1	ENSG00000136754.12	chr10	-	27060003	27060018	27059173	27059274	27065993	27066170	-0.15000	0.00030	excluded	K562	PRPF8
SE	ABI1	ENSG00000136754.12	chr10	-	27044583	27044670	27040526	27040712	27047990	27048167	0.31500	0.00000	included	HepG2	U2AF1
SE	ABI1	ENSG00000136754.12	chr10	-	27060003	27060018	27059173	27059274	27065993	27066170	0.44900	0.00000	included	HepG2	U2AF1
SE	ABI1	ENSG00000136754.12	chr10	-	27047990	27048167	27044583	27044670	27054146	27054247	-0.40000	0.00000	excluded	HepG2	U2AF1
SE	ABI1	ENSG00000136754.12	chr10	-	27060003	27060018	27059173	27059274	27065993	27066170	-0.15300	0.00002	excluded	K562	AKAP8L
SE	ABI1	ENSG00000136754.12	chr10	-	27044583	27044670	27040526	27040712	27047990	27048167	0.24700	0.00000	included	HepG2	U2AF2
SE	ABI1	ENSG00000136754.12	chr10	-	27060003	27060018	27059173	27059274	27065993	27066170	-0.12000	0.00173	excluded	K562	METAP2
SE	ABI1	ENSG00000136754.12	chr10	-	27047990	27048167	27040526	27040712	27054146	27054247	-0.21000	0.00005	excluded	K562	AQR
SE	ABI1	ENSG00000136754.12	chr10	-	27057780	27057921	27054146	27054247	27059173	27059274	-0.07100	0.00000	excluded	K562	PUS1

Showing 1 to 10 of 134 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ABI1

General Information

Functions

Localization

Domains (AlphaFold: ABI1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ABI1 is not avaliable on ENCORE database.

24 proteins are bound to ABI1 RNA:

eCLIP assay for ABI1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ABI1 is not available on ENCORE database.

53 RBPs can affect the gene expression of ABI1 :

The Knockdown/knockout RNA-Seq assay for ABI1 is not available on ENCORE database.

47 RBPs can affect the splicing of ABI1 :

The Knockdown/knockout RNA-Seq assay for ABI1 is not avaliable on ENCORE database.