CDK18

General Information

Gene Name : CDK18
Gene ID : ENSG00000117266.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CDK18)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CDK18	ENSG00000117266.15	0.00	0.17	0.09	ENCSR000AEF
HepG2	CDK18	ENSG00000117266.15	14.85	7.13	10.99	ENCSR985KAT
K562	CDK18	ENSG00000117266.15	0.44	0.34	0.39	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CDK18 is not avaliable on ENCORE database.

Proteins bound to RNA

CDK18 RNA is bound by 18 proteins.

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eCLIP assay for CDK18 is not avaliable on ENCORE database.

18 proteins are bound to CDK18 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	205495926	205496014	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.90806	21.87183	HepG2	PRPF8
chr1	205473742	205473835	+	5'-UTR	6.31906	21.84366	HepG2	PCBP2
chr1	205473741	205473830	+	5'-UTR	3.57250	12.47473	HepG2	CSTF2T
chr1	205501482	205501607	+	3'-UTR	3.77942	11.66766	HepG2	HNRNPK
chr1	205495949	205496006	+	3'-UTR,5'-UTR,CDS,intron-Proximal	4.32688	11.59516	HepG2	EFTUD2
chr1	205496747	205496813	+	intron-Distal	3.99655	11.57547	HepG2	SF3B4
chr1	205487173	205487271	+	intron-Distal	5.30955	10.55930	HepG2	RBFOX2
chr1	205498651	205498725	+	3'-UTR,CDS,intron-Proximal	3.27197	10.15419	HepG2	PRPF8
chr1	205492524	205492628	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.98950	9.88830	HepG2	SF3B4
chr1	205501308	205501373	+	3'-UTR	3.70062	9.25511	HepG2	ZC3H11A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 53 entries

eCLIP assay for CDK18 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CDK18 is not available on ENCORE database.
107 RBPs can affect the levels of CDK18.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CDK18 is not available on ENCORE database.

107 RBPs can affect the gene expression of CDK18 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CDK18	ENSG00000117266.11	667.69410	1613.17880	-1.27260	47.25030	45.76670	HepG2	SSB
CDK18	ENSG00000117266.11	1838.23760	870.12850	1.07890	46.22060	43.83560	HepG2	DNAJC2
CDK18	ENSG00000117266.11	473.85860	1987.63900	-2.06850	40.66380	38.03890	HepG2	SF3A3
CDK18	ENSG00000117266.11	390.97410	1852.76560	-2.24450	38.79760	37.47690	HepG2	SRSF1
CDK18	ENSG00000117266.11	1912.07460	1000.28760	0.93460	38.33780	36.05990	HepG2	ILF2
CDK18	ENSG00000117266.11	2692.46330	955.44590	1.49460	37.33010	35.43380	HepG2	HNRNPLL
CDK18	ENSG00000117266.11	2041.69620	980.21670	1.05850	36.88140	34.77690	HepG2	HNRNPF
CDK18	ENSG00000117266.11	848.04800	1701.84710	-1.00490	30.98830	29.31330	HepG2	UTP3
CDK18	ENSG00000117266.11	1889.14810	963.04090	0.97200	30.70760	28.89010	HepG2	SRSF7
CDK18	ENSG00000117266.11	1624.08430	872.07090	0.89700	28.27000	26.52020	HepG2	SAFB2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 114 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CDK18 is not available on ENCORE database.

19 RBPs can affect the splicing of CDK18 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CDK18	ENSG00000117266.11	chr1	+	205498126	205498224	205497175	205497296	205498451	205498557	-0.26200	0.00000	0.00000	excluded	HepG2	U2AF2
RI	CDK18	ENSG00000117266.11	chr1	+	205498648	205499477	205498648	205498691	205499386	205499477	0.11500	0.00000	0.00001	included	HepG2	QKI
RI	CDK18	ENSG00000117266.11	chr1	+	205498648	205499477	205498648	205498691	205499386	205499477	0.11600	0.00000	0.00006	included	HepG2	NCBP2
RI	CDK18	ENSG00000117266.11	chr1	+	205498648	205499477	205498648	205498691	205499386	205499477	0.12800	0.00000	0.00001	included	HepG2	SF3B4
RI	CDK18	ENSG00000117266.11	chr1	+	205492274	205492753	205492274	205492425	205492610	205492753	0.34200	0.00000	0.00000	included	HepG2	FUBP3
RI	CDK18	ENSG00000117266.11	chr1	+	205498648	205499477	205498648	205498691	205499386	205499477	0.16400	0.00000	0.00000	included	HepG2	HNRNPK
RI	CDK18	ENSG00000117266.11	chr1	+	205492274	205492753	205492274	205492425	205492610	205492753	0.40100	0.00000	0.00001	included	HepG2	LARP4
SE	CDK18	ENSG00000117266.11	chr1	+	205498126	205498224	205497175	205497296	205498451	205498557	-0.15900	0.00001	0.00023	excluded	HepG2	U2AF1
RI	CDK18	ENSG00000117266.11	chr1	+	205498648	205499477	205498648	205498691	205499386	205499477	0.08600	0.00001	0.00148	included	HepG2	DDX6
RI	CDK18	ENSG00000117266.11	chr1	+	205498451	205499477	205498451	205498557	205498648	205499477	0.06900	0.00001	0.00040	included	HepG2	PCBP1

Showing 1 to 10 of 27 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CDK18

General Information

Functions

Localization

Domains (AlphaFold: CDK18)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CDK18 is not avaliable on ENCORE database.

18 proteins are bound to CDK18 RNA:

eCLIP assay for CDK18 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CDK18 is not available on ENCORE database.

107 RBPs can affect the gene expression of CDK18 :

The Knockdown/knockout RNA-Seq assay for CDK18 is not available on ENCORE database.

19 RBPs can affect the splicing of CDK18 :

The Knockdown/knockout RNA-Seq assay for CDK18 is not avaliable on ENCORE database.