HNF1A

General Information

Gene Name : HNF1A
Gene ID : ENSG00000135100.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: HNF1A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	HNF1A	ENSG00000135100.17	0.00	0.00	0.00	ENCSR000AEF
HepG2	HNF1A	ENSG00000135100.17	47.99	12.35	30.17	ENCSR985KAT
K562	HNF1A	ENSG00000135100.17	0.00	0.00	0.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for HNF1A is not avaliable on ENCORE database.

Proteins bound to RNA

HNF1A RNA is bound by 20 proteins.

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eCLIP assay for HNF1A is not avaliable on ENCORE database.

20 proteins are bound to HNF1A RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	121426106	121426225	+	intron-Distal	5.53335	49.06786	HepG2	AGGF1
chr12	121433002	121433183	+	intron-Distal	5.88032	40.87503	HepG2	AGGF1
chr12	121426203	121426362	+	intron-Distal	6.65273	33.77283	HepG2	XPO5
chr12	121416437	121416515	+	5'-UTR,CDS,intron-Proximal	5.03743	33.54367	HepG2	PRPF4
chr12	121432657	121432811	+	intron-Distal	4.96685	27.48503	HepG2	AGGF1
chr12	121433023	121433134	+	intron-Distal	4.87745	24.04896	HepG2	HNRNPL
chr12	121432725	121432826	+	intron-Distal	5.75974	24.03652	HepG2	HNRNPL
chr12	121433367	121433468	+	intron-Distal	4.83935	22.22815	HepG2	AGGF1
chr12	121433371	121433460	+	intron-Distal	5.84525	21.85136	HepG2	HNRNPL
chr12	121433283	121433367	+	intron-Distal	5.70845	21.81053	HepG2	AGGF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 93 entries

eCLIP assay for HNF1A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for HNF1A is not available on ENCORE database.
63 RBPs can affect the levels of HNF1A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for HNF1A is not available on ENCORE database.

63 RBPs can affect the gene expression of HNF1A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
HNF1A	ENSG00000135100.13	937.87950	1828.85880	-0.96350	33.36880	32.13180	HepG2	SRFBP1
HNF1A	ENSG00000135100.13	746.84260	1619.26300	-1.11650	30.58940	29.23340	HepG2	RBM22
HNF1A	ENSG00000135100.13	1048.26330	466.70070	1.16730	29.97750	28.18000	HepG2	SAFB2
HNF1A	ENSG00000135100.13	566.94230	1163.28380	-1.03690	29.01300	27.53830	HepG2	ACO1
HNF1A	ENSG00000135100.13	523.95490	1224.61520	-1.22480	25.50110	24.03100	HepG2	TAF15
HNF1A	ENSG00000135100.13	1325.37250	734.83090	0.85080	22.96150	21.33050	HepG2	SLBP
HNF1A	ENSG00000135100.13	1397.93160	813.55630	0.78090	21.46310	20.12890	HepG2	PUM1
HNF1A	ENSG00000135100.13	920.53250	465.71130	0.98290	19.62380	18.03750	HepG2	DNAJC2
HNF1A	ENSG00000135100.13	973.01590	524.08140	0.89260	18.91530	17.44080	HepG2	HNRNPU
HNF1A	ENSG00000135100.13	980.98800	509.13530	0.94610	16.42830	15.39250	HepG2	TIAL1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 63 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for HNF1A is not available on ENCORE database.

5 RBPs can affect the splicing of HNF1A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	HNF1A	ENSG00000135100.13	chr12	+	121437264	121437430	121437285	121437430	121437070	121437192	0.57700	0.00000	0.00000	longer	HepG2	RBM22
RI	HNF1A	ENSG00000135100.13	chr12	+	121437070	121437430	121437070	121437192	121437285	121437430	0.52500	0.00000	0.00000	included	HepG2	RBM22
A3SS	HNF1A	ENSG00000135100.13	chr12	+	121437264	121437430	121437285	121437430	121437070	121437192	0.14200	0.00012	0.01391	longer	HepG2	SF3A3
RI	HNF1A	ENSG00000135100.13	chr12	+	121437070	121437430	121437070	121437192	121437285	121437430	0.12300	0.00012	0.00227	included	HepG2	SF3A3
A5SS	HNF1A	ENSG00000135100.13	chr12	+	121426635	121426835	121426635	121426803	121431322	121431509	-0.09900	0.00031	0.03982	shorter	HepG2	TAF15
RI	HNF1A	ENSG00000135100.13	chr12	+	121434343	121436103	121434343	121434545	121435276	121436103	0.09000	0.00048	0.00686	included	HepG2	RBM22
RI	HNF1A	ENSG00000135100.13	chr12	+	121437070	121437430	121437070	121437192	121437264	121437430	0.14800	0.00114	0.05581	included	HepG2	LARP4
RI	HNF1A	ENSG00000135100.13	chr12	+	121437070	121437430	121437070	121437192	121437264	121437430	0.21800	0.00486	0.08562	included	HepG2	FTO

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

HNF1A

General Information

Functions

Localization

Domains (AlphaFold: HNF1A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for HNF1A is not avaliable on ENCORE database.

20 proteins are bound to HNF1A RNA:

eCLIP assay for HNF1A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for HNF1A is not available on ENCORE database.

63 RBPs can affect the gene expression of HNF1A :

The Knockdown/knockout RNA-Seq assay for HNF1A is not available on ENCORE database.

5 RBPs can affect the splicing of HNF1A :

The Knockdown/knockout RNA-Seq assay for HNF1A is not avaliable on ENCORE database.