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YBX3
eCLIP
in K562
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
551
551-control
Exp_UID
551
551
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR529FKI
ENCSR660VTT
ENCODE_alias
gene-yeo:551
gene-yeo:551-control
RBP
YBX3
YBX3
Cell_Line
K562
K562
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB021IRD
ENCAB021IRD
Antibody
A303-070A
A303-070A
Lot_num
1
1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
283
313
Replicate Information
Rep_UID
551_01
551_02
551_INPUT
Exp UID
551
551
551
Replicate_type
rep1
rep2
control
ENCODE_ACCESSION
ENCLB131TWE
ENCLB422FBK
ENCLB893WUO
ENCODE_alias
gene-yeo:551_01
gene-yeo:551_02
gene-yeo:551_INPUT
Biosample Name
K562_081815
K562_091615
K562_081815
Biosample_ENCODE_Accession
ENCBS175JIH
ENCBS505ILK
ENCBS175JIH
Biosample_ENCODE_Alias
gene-yeo:K562_081815
gene-yeo:K562_091615
gene-yeo:K562_081815
Cell_Line
K562
K562
K562
Culture_Start_Date
2015-08-18
2015-09-16
2015-08-18
Culture_End_Date
2015-09-08
2015-10-14
2015-09-08
Passage
5
4
5
QC Stats
Experiment QC
551
551-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
551_01
551_02
551_INPUT
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
551_01
551_02
551_INPUT
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
X1A
X2A
none
inline_barcode_2
X1B
X2B
none
i5_barcode
506
506
505
i7_barcode
706
706
705
Sequencing Information
Rep_UID
551_01
551_02
551_INPUT
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/551.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
551
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
551.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
551
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=551)
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