LDHA

General Information

Gene Name : LDHA
Gene ID : ENSG00000134333.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LDHA)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LDHA	ENSG00000134333.13	1977.09	1502.68	1739.88	ENCSR000AEF
HepG2	LDHA	ENSG00000134333.13	1572.13	1808.56	1690.35	ENCSR985KAT
K562	LDHA	ENSG00000134333.13	1018.88	1156.91	1087.89	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LDHA is not avaliable on ENCORE database.

Proteins bound to RNA

LDHA RNA is bound by 36 proteins.

CanvasJS.com

eCLIP assay for LDHA is not avaliable on ENCORE database.

36 proteins are bound to LDHA RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	18422415	18422420	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.75287	400.00000	K562	YBX3
chr11	18429222	18429235	+	3'-UTR	4.53488	400.00000	K562	PUM2
chr11	18422432	18422434	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.55700	400.00000	K562	YBX3
chr11	18429063	18429116	+	3'-UTR	3.97407	400.00000	K562	NOLC1
chr11	18422442	18422452	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.89613	400.00000	K562	YBX3
chr11	18425298	18425319	+	3'-UTR,CDS	5.20734	400.00000	HepG2	G3BP1
chr11	18429047	18429063	+	3'-UTR	4.23302	400.00000	K562	NOLC1
chr11	18428931	18428950	+	3'-UTR	7.63876	400.00000	HepG2	SUB1
chr11	18429187	18429220	+	3'-UTR	3.75404	400.00000	K562	PUM2
chr11	18425257	18425331	+	3'-UTR,CDS,intron-Proximal	3.59273	400.00000	K562	TARDBP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 252 entries

eCLIP assay for LDHA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LDHA is not available on ENCORE database.
160 RBPs can affect the levels of LDHA.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LDHA is not available on ENCORE database.

160 RBPs can affect the gene expression of LDHA :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LDHA	ENSG00000134333.9	16991.56060	87435.97850	-2.36340	99999.99999	99999.99999	HepG2	SRSF1
LDHA	ENSG00000134333.9	28783.40290	78669.63210	-1.45060	239.49170	236.33750	HepG2	PUM1
LDHA	ENSG00000134333.9	10018.31990	53616.90250	-2.42000	212.42510	209.32600	HepG2	TIAL1
LDHA	ENSG00000134333.9	18030.79060	56101.84750	-1.63760	197.46610	195.08670	HepG2	SSB
LDHA	ENSG00000134333.9	25305.58750	68449.11400	-1.43560	139.57170	136.42100	HepG2	ETF1
LDHA	ENSG00000134333.9	33314.65610	83767.78910	-1.33020	128.47310	125.61790	HepG2	SF3B4
LDHA	ENSG00000134333.9	10339.23830	41200.41680	-1.99450	122.97740	120.05930	HepG2	RPS19
LDHA	ENSG00000134333.9	36725.90700	89543.50290	-1.28580	117.72580	115.58600	HepG2	NELFE
LDHA	ENSG00000134333.9	29546.07290	64616.74680	-1.12890	112.28210	110.26590	HepG2	SRFBP1
LDHA	ENSG00000134333.9	35858.87880	83398.72040	-1.21770	109.96270	107.34520	HepG2	RECQL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 203 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LDHA is not available on ENCORE database.

11 RBPs can affect the splicing of LDHA :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	LDHA	ENSG00000134333.9	chr11	+	18418365	18418515	18422383	18422557	18416109	18416183	18424386	18424560	0.10700	0.00000	0.00017	1included	HepG2	FUS
MXE	LDHA	ENSG00000134333.9	chr11	+	18418365	18418515	18422383	18422557	18416109	18416183	18424386	18424560	0.06300	0.00000	0.00010	1included	K562	LARP7
MXE	LDHA	ENSG00000134333.9	chr11	+	18418365	18418515	18422383	18422557	18416109	18416183	18424386	18424560	-0.09200	0.00000	0.00004	2included	K562	SMNDC1
MXE	LDHA	ENSG00000134333.9	chr11	+	18418365	18418515	18422383	18422557	18416109	18416183	18424386	18424560	0.11900	0.00000	0.00001	1included	K562	SUPV3L1
SE	LDHA	ENSG00000134333.9	chr11	+	18422331	18422473			18420961	18421095	18424386	18424560	0.33100	0.00002	0.00051	included	K562	AQR
MXE	LDHA	ENSG00000134333.9	chr11	+	18418365	18418515	18420977	18421095	18416108	18416183	18422383	18422557	0.09800	0.00002	0.00105	1included	HepG2	DDX55
MXE	LDHA	ENSG00000134333.9	chr11	+	18418365	18418515	18420977	18421095	18416108	18416183	18422383	18422557	0.10200	0.00003	0.00267	1included	K562	UCHL5
MXE	LDHA	ENSG00000134333.9	chr11	+	18418365	18418515	18422383	18422557	18416109	18416183	18424386	18424560	-0.06500	0.00006	0.04422	2included	K562	CSTF2T
MXE	LDHA	ENSG00000134333.9	chr11	+	18418365	18418515	18420977	18421095	18416108	18416183	18422383	18422557	0.08200	0.00051	0.02153	1included	HepG2	SUPV3L1
MXE	LDHA	ENSG00000134333.9	chr11	+	18422383	18422557	18425284	18425358	18420977	18421095	18426995	18427119	0.17700	0.00307	0.03957	1included	K562	DROSHA

Showing 1 to 10 of 14 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LDHA

General Information

Functions

Localization

Domains (AlphaFold: LDHA)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LDHA is not avaliable on ENCORE database.

36 proteins are bound to LDHA RNA:

eCLIP assay for LDHA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LDHA is not available on ENCORE database.

160 RBPs can affect the gene expression of LDHA :

The Knockdown/knockout RNA-Seq assay for LDHA is not available on ENCORE database.

11 RBPs can affect the splicing of LDHA :

The Knockdown/knockout RNA-Seq assay for LDHA is not avaliable on ENCORE database.