SMG7

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SMG7	ENSG00000116698.21	43.65	39.52	41.59	ENCSR000AEF
HepG2	SMG7	ENSG00000116698.21	21.89	30.06	25.98	ENCSR985KAT
K562	SMG7	ENSG00000116698.21	43.31	50.15	46.73	ENCSR000AEO

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	SMG7-BGKcLV33-K562		SMG7	K562	Released			CRISPR	KD% = no band on the position,
knockdown followed by RNA-seq	SMG7-BGKcLV33-K562	ENCSR157IJG	SMG7	K562	Released		ENCSR271ZAB	CRISPR	KD% = 77.8,71.8

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
SMG7	ENCAB654UHD	A302-170A	1					BGKcLV33-57, Released, ENCODE4

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
SMG7	K562	CRISPR			BGKcLV33-53,BGKcLV33-54	BGKcLV33-1,BGKcLV33-2	no band on the position,	Released	ENCODE4
SMG7	K562	CRISPR	ENCSR157IJG	ENCSR271ZAB	SMG7-BGKcLV33-57,SMG7-BGKcLV33-58	NT-BGKcLV33-1,NT-BGKcLV33-2	77.8,71.8	Released	ENCODE4
SMG7	HepG2	CRISPR			BGHcLV31-53,BGHcLV31-54	BGHcLV31-1,BGHcLV31-2	too many bands,	NotSatisfied	ENCODE4

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SMG7 is not avaliable on ENCORE database.

Proteins bound to RNA

SMG7 RNA is bound by 45 proteins.

eCLIP assay for SMG7 is not avaliable on ENCORE database.

45 proteins are bound to SMG7 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	183522990	183523043	+	3'-UTR,intron-Distal	3.29281	4.30677	K562	YBX3
chr1	183523233	183523293	+	3'-UTR,intron-Distal	3.63347	4.89282	K562	ZC3H11A
chr1	183522856	183522987	+	3'-UTR,intron-Distal	4.00387	14.45248	HepG2	PCBP2
chr1	183484976	183485029	+	3'-UTR,CDS,intron-Proximal	4.61860	4.48002	K562	AQR
chr1	183521983	183522071	+	3'-UTR,intron-Distal,intron-Proximal	4.45522	46.10493	K562	UPF1
chr1	183521989	183522070	+	3'-UTR,intron-Distal,intron-Proximal	3.98544	11.91844	HepG2	PCBP2
chr1	183497153	183497209	+	3'-UTR,CDS,intron-Proximal	3.89579	4.00320	K562	AQR
chr1	183486915	183486957	+	3'-UTR,CDS,intron-Proximal	3.25266	4.56058	HepG2	BCLAF1
chr1	183522336	183522402	+	3'-UTR,intron-Distal	5.65535	9.86388	K562	PUM2
chr1	183521551	183521676	+	3'-UTR,intron-Distal	3.95832	9.53397	HepG2	UPF1
chr1	183521694	183521753	+	3'-UTR,intron-Distal	4.32527	5.07111	HepG2	UPF1
chr1	183522990	183523037	+	3'-UTR,intron-Distal	4.72656	10.95110	K562	PABPC4
chr1	183484997	183485054	+	3'-UTR,CDS,intron-Proximal	3.64022	4.97821	K562	BUD13
chr1	183522150	183522208	+	3'-UTR,CDS,intron-Distal	4.61311	6.20043	HepG2	UPF1
chr1	183481959	183482011	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.91418	5.36861	HepG2	U2AF2
chr1	183522517	183522572	+	3'-UTR,intron-Distal	4.14329	10.56983	K562	FAM120A
chr1	183522937	183522992	+	3'-UTR,intron-Distal	4.23958	42.02789	K562	UPF1
chr1	183522347	183522414	+	3'-UTR,intron-Distal	4.51226	4.55369	K562	LIN28B
chr1	183522525	183522582	+	3'-UTR,intron-Distal	3.22530	4.45268	K562	TARDBP
chr1	183521578	183521679	+	3'-UTR,intron-Distal	4.85012	7.48708	HepG2	AKAP1
chr1	183481961	183482013	+	3'-UTR,CDS,intron-Distal,intron-Proximal	5.60862	15.80051	K562	U2AF2
chr1	183522959	183522990	+	3'-UTR,intron-Distal	5.38284	45.00389	K562	PABPC4
chr1	183522605	183522659	+	3'-UTR,intron-Distal	3.16361	7.23673	K562	FAM120A
chr1	183522982	183523040	+	3'-UTR,intron-Distal	4.15888	5.09966	HepG2	DDX55
chr1	183523248	183523296	+	3'-UTR,intron-Distal	3.01109	3.03291	HepG2	AKAP1
chr1	183522066	183522133	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.91112	6.16190	HepG2	AKAP1
chr1	183486818	183486880	+	3'-UTR,CDS,intron-Proximal	4.03376	4.23295	HepG2	GRWD1
chr1	183522872	183523047	+	3'-UTR,intron-Distal	3.48028	21.55812	K562	DDX55
chr1	183523000	183523044	+	3'-UTR,intron-Distal	4.65657	14.47702	K562	UPF1
chr1	183521984	183522051	+	3'-UTR,intron-Distal,intron-Proximal	3.51579	6.21364	HepG2	AKAP1
chr1	183522071	183522161	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.13752	52.25464	K562	UPF1
chr1	183481960	183482045	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.86059	5.83621	K562	AQR
chr1	183521806	183521842	+	3'-UTR,intron-Distal	4.47948	13.10292	K562	UPF1
chr1	183522823	183522836	+	3'-UTR,intron-Distal	3.89294	6.84689	K562	UPF1
chr1	183521328	183521384	+	3'-UTR,intron-Distal	4.51345	5.14974	HepG2	UPF1
chr1	183522507	183522557	+	3'-UTR,intron-Distal	4.88726	24.07611	K562	UPF1
chr1	183522173	183522219	+	3'-UTR,CDS,intron-Distal	3.97409	3.34655	HepG2	AKAP1
chr1	183522583	183522685	+	3'-UTR,intron-Distal	6.30363	55.34888	K562	UPF1
chr1	183498133	183498175	+	3'-UTR,CDS	3.28326	4.05694	K562	IGF2BP1
chr1	183521980	183522058	+	3'-UTR,intron-Distal,intron-Proximal	3.01431	5.21190	K562	AKAP1
chr1	183522193	183522233	+	3'-UTR,CDS,intron-Distal	3.24857	5.14925	K562	FAM120A
chr1	183522097	183522162	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.30074	13.35458	K562	FAM120A
chr1	183522557	183522583	+	3'-UTR,intron-Distal	5.55171	28.16421	K562	UPF1
chr1	183522926	183522984	+	3'-UTR,intron-Distal	5.36658	6.24531	K562	AKAP1
chr1	183522880	183522974	+	3'-UTR,intron-Distal	3.42955	7.08844	K562	PCBP1
chr1	183522183	183522236	+	3'-UTR,CDS,intron-Distal	4.04549	18.46203	K562	UPF1
chr1	183522874	183522937	+	3'-UTR,intron-Distal	3.43800	25.56930	K562	UPF1
chr1	183521326	183521369	+	3'-UTR,intron-Distal	3.85012	3.34655	HepG2	AKAP1
chr1	183522940	183522979	+	3'-UTR,intron-Distal	3.07140	5.98267	K562	FAM120A
chr1	183522918	183522973	+	3'-UTR,intron-Distal	4.80973	4.40829	K562	ZC3H11A
chr1	183522595	183522655	+	3'-UTR,intron-Distal	3.60287	9.32395	K562	TARDBP
chr1	183523239	183523301	+	3'-UTR,intron-Distal	4.02110	35.96795	K562	UPF1
chr1	183522076	183522150	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.36046	9.59063	HepG2	UPF1
chr1	183522582	183522595	+	3'-UTR,intron-Distal	4.38703	4.38266	K562	TARDBP
chr1	183481961	183482010	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.57459	7.03189	K562	U2AF1
chr1	183522902	183522959	+	3'-UTR,intron-Distal	4.50030	32.14546	K562	PABPC4
chr1	183522916	183522992	+	3'-UTR,intron-Distal	3.97661	9.62374	K562	APOBEC3C
chr1	183521554	183521590	+	3'-UTR,intron-Distal	4.11685	11.25148	K562	UPF1
chr1	183442108	183442296	+	5'-UTR,intron-Distal,intron-Proximal	3.94735	14.35133	K562	CSTF2T
chr1	183441760	183441837	+	5'-UTR,CDS,intron-Proximal	3.73587	10.64040	HepG2	PRPF8
chr1	183441724	183441824	+	5'-UTR,CDS,intron-Proximal	3.37395	5.54641	HepG2	PPIG
chr1	183442938	183442995	+	5'-UTR,intron-Distal	4.09713	4.13641	K562	TARDBP
chr1	183442095	183442171	+	5'-UTR,intron-Distal,intron-Proximal	3.34369	4.24485	K562	GTF2F1
chr1	183442099	183442154	+	5'-UTR,intron-Distal,intron-Proximal	4.87219	5.74291	HepG2	FAM120A
chr1	183441611	183441712	+	5'-UTR	3.29285	6.13609	HepG2	NCBP2
chr1	183441648	183441717	+	5'-UTR	3.95085	5.01580	HepG2	DDX3X
chr1	183442036	183442154	+	5'-UTR,intron-Distal,intron-Proximal	3.65361	10.81777	HepG2	PRPF4
chr1	183442077	183442156	+	5'-UTR,intron-Distal,intron-Proximal	3.85684	6.55430	HepG2	RBFOX2
chr1	183515387	183515466	+	CDS	4.83943	7.77688	K562	IGF2BP2
chr1	183514383	183514436	+	CDS	4.93933	7.30074	K562	IGF2BP1
chr1	183502881	183502938	+	CDS	3.29559	4.47973	K562	YBX3
chr1	183514384	183514445	+	CDS	4.80043	7.57271	K562	IGF2BP2
chr1	183518983	183519057	+	CDS	3.33446	4.09351	K562	IGF2BP2
chr1	183507535	183507608	+	CDS,intron-Proximal	5.73508	6.69228	HepG2	PRPF8
chr1	183514174	183514245	+	CDS	3.83064	8.57997	HepG2	IGF2BP1
chr1	183514173	183514229	+	CDS	3.78323	5.99631	K562	IGF2BP2
chr1	183514334	183514389	+	CDS	3.56519	5.15873	HepG2	IGF2BP1
chr1	183514064	183514093	+	CDS,intron-Proximal	4.26223	3.06406	HepG2	IGF2BP1
chr1	183520223	183520258	+	CDS	3.84712	13.02920	K562	YBX3
chr1	183519971	183520046	+	CDS	4.06427	7.23979	K562	IGF2BP1
chr1	183506348	183506415	+	CDS,intron-Proximal	4.22183	4.49024	K562	AQR
chr1	183514228	183514285	+	CDS	3.45069	4.61266	K562	IGF2BP1
chr1	183515469	183515519	+	CDS,intron-Proximal	3.80392	6.32052	K562	AQR
chr1	183514064	183514083	+	CDS,intron-Proximal	3.69003	5.26527	K562	IGF2BP2
chr1	183513577	183513633	+	CDS,intron-Proximal	3.52998	4.68791	K562	PCBP1
chr1	183513443	183513517	+	CDS,intron-Proximal	4.38920	7.08280	K562	SF3B4
chr1	183514169	183514228	+	CDS	3.86331	8.44316	K562	IGF2BP1
chr1	183515285	183515449	+	CDS	5.07023	15.87696	K562	IGF2BP1
chr1	183514308	183514334	+	CDS	3.24525	4.22482	HepG2	IGF2BP1
chr1	183514303	183514383	+	CDS	3.48027	6.57947	K562	IGF2BP1
chr1	183514113	183514163	+	CDS	3.38605	3.99870	K562	IGF2BP1
chr1	183518925	183518997	+	CDS	3.60752	4.05694	K562	IGF2BP1
chr1	183515171	183515285	+	CDS	4.23781	12.86436	K562	IGF2BP1
chr1	183514286	183514384	+	CDS	4.48031	10.03284	K562	IGF2BP2
chr1	183506301	183506388	+	CDS,intron-Proximal	3.68488	3.54718	K562	PRPF8
chr1	183519942	183519978	+	CDS	4.67543	4.08466	HepG2	IGF2BP1
chr1	183519886	183519968	+	CDS	3.15678	7.52642	K562	IGF2BP2
chr1	183518988	183519058	+	CDS	4.09283	3.06406	HepG2	IGF2BP1
chr1	183507547	183507620	+	CDS,intron-Proximal	3.80843	7.75444	K562	PRPF8
chr1	183515454	183515514	+	CDS,intron-Proximal	5.12932	5.68502	HepG2	PRPF8
chr1	183516181	183516255	+	CDS,intron-Distal,intron-Proximal	4.97805	6.19339	K562	PTBP1
chr1	183519885	183519942	+	CDS,intron-Proximal	4.35645	6.10061	HepG2	IGF2BP1
chr1	183513589	183513633	+	CDS,intron-Proximal	3.35377	5.57214	K562	IGF2BP2
chr1	183519888	183519971	+	CDS	4.74403	6.05696	K562	IGF2BP1
chr1	183506311	183506391	+	CDS,intron-Proximal	4.37296	7.13970	HepG2	PRPF8
chr1	183520216	183520223	+	CDS	3.79674	12.63512	K562	YBX3
chr1	183518356	183518423	+	CDS	3.78000	6.24329	K562	IGF2BP1
chr1	183447752	183447843	+	intron-Distal	3.11187	4.86246	K562	HNRNPM
chr1	183482153	183482222	+	intron-Distal	4.09199	3.24603	K562	KHSRP
chr1	183441822	183441994	+	intron-Distal,intron-Proximal	4.49306	9.79246	K562	AATF
chr1	183500083	183500173	+	intron-Distal	4.41454	3.30440	HepG2	QKI
chr1	183474876	183474936	+	intron-Distal	4.33380	3.80778	HepG2	QKI
chr1	183474504	183474597	+	intron-Distal	5.18276	9.85433	K562	MATR3
chr1	183487024	183487066	+	intron-Distal,intron-Proximal	3.94217	3.12843	K562	PRPF8
chr1	183476850	183476972	+	intron-Distal	4.09199	3.25538	K562	KHSRP
chr1	183449323	183449401	+	intron-Distal	4.39308	6.11515	K562	PTBP1
chr1	183450029	183450123	+	intron-Distal	3.81261	4.52298	HepG2	QKI
chr1	183460522	183460554	+	intron-Distal	4.06787	4.31512	K562	KHSRP
chr1	183513768	183513847	+	intron-Distal	3.47662	9.74649	K562	KHSRP
chr1	183447479	183447613	+	intron-Distal	3.15342	4.10408	K562	KHSRP
chr1	183498941	183499031	+	intron-Distal	4.67660	6.73684	K562	KHSRP
chr1	183469124	183469217	+	intron-Distal	4.60155	5.44709	K562	KHSRP
chr1	183513672	183513768	+	intron-Distal,intron-Proximal	4.08296	13.80525	K562	KHSRP
chr1	183441924	183441997	+	intron-Distal	3.71608	9.61582	HepG2	FAM120A
chr1	183468716	183468874	+	intron-Distal	3.23340	8.01059	K562	KHSRP
chr1	183498701	183498820	+	intron-Distal,intron-Proximal	3.23353	6.39618	K562	KHSRP
chr1	183494006	183494109	+	intron-Distal	3.86147	5.00478	HepG2	PCBP2
chr1	183442196	183442298	+	intron-Distal,intron-Proximal	4.10515	6.48623	K562	RBFOX2
chr1	183474960	183475077	+	intron-Distal	3.82232	5.07626	HepG2	PTBP1
chr1	183442179	183442291	+	intron-Distal,intron-Proximal	4.83182	19.16217	HepG2	RBFOX2
chr1	183508533	183508625	+	intron-Distal	3.89308	4.67922	K562	PTBP1
chr1	183442230	183442292	+	intron-Distal	3.85441	6.85787	HepG2	CSTF2T
chr1	183465554	183465625	+	intron-Distal	4.68556	3.92866	K562	PTBP1
chr1	183469277	183469351	+	intron-Distal	5.30907	12.19503	K562	KHSRP
chr1	183449395	183449458	+	intron-Distal	4.59607	5.75114	HepG2	PTBP1
chr1	183513673	183513752	+	intron-Distal,intron-Proximal	3.35720	5.32296	K562	PRPF8
chr1	183441905	183441996	+	intron-Distal	5.69581	12.86536	HepG2	CSTF2T
chr1	183506040	183506194	+	intron-Distal,intron-Proximal	3.23359	4.30679	K562	KHSRP
chr1	183457136	183457185	+	intron-Distal	3.87841	3.27946	HepG2	HNRNPM
chr1	183442375	183442482	+	intron-Distal	3.25216	4.51006	K562	CSTF2T
chr1	183450139	183450202	+	intron-Distal	5.09525	8.32953	HepG2	QKI
chr1	183474982	183475028	+	intron-Distal	4.04037	3.16986	HepG2	QKI
chr1	183449655	183449717	+	intron-Distal	4.67852	10.02898	K562	PTBP1
chr1	183446544	183446593	+	intron-Distal	3.13258	3.57996	HepG2	XPO5
chr1	183474192	183474271	+	intron-Distal	3.57500	3.84025	HepG2	SUGP2
chr1	183446438	183446512	+	intron-Distal	3.30654	3.57996	HepG2	XPO5
chr1	183469351	183469388	+	intron-Distal	4.04223	4.10688	K562	KHSRP
chr1	183460562	183460629	+	intron-Distal	3.38646	4.98044	HepG2	CSTF2
chr1	183441930	183441997	+	intron-Distal	4.90343	6.68679	HepG2	GTF2F1
chr1	183456432	183456576	+	intron-Distal	3.63857	5.63547	HepG2	HNRNPL
chr1	183446382	183446476	+	intron-Distal	3.52706	3.30286	HepG2	PTBP1
chr1	183442567	183442630	+	intron-Distal	3.12068	4.23770	K562	EIF4G2
chr1	183474168	183474238	+	intron-Distal	5.74297	14.03089	HepG2	PTBP1
chr1	183441792	183441937	+	intron-Distal,intron-Proximal	3.97748	3.60521	K562	FUS
chr1	183441883	183441994	+	intron-Distal,intron-Proximal	3.46078	9.66104	K562	CSTF2T
chr1	183517959	183518009	+	intron-Distal	3.89445	7.69621	K562	KHSRP
chr1	183486961	183487063	+	intron-Distal,intron-Proximal	3.51427	10.14120	K562	KHSRP
chr1	183442574	183442675	+	intron-Distal	3.30099	5.12258	K562	CSTF2T
chr1	183449366	183449525	+	intron-Distal	4.44651	5.01208	K562	MATR3
chr1	183468119	183468179	+	intron-Distal	3.16626	3.07751	K562	KHSRP
chr1	183449334	183449381	+	intron-Distal	3.94453	3.09122	HepG2	PTBP1
chr1	183474167	183474231	+	intron-Distal	3.20666	4.05586	HepG2	U2AF2
chr1	183441933	183442007	+	intron-Distal	4.45360	11.47727	HepG2	PRPF4
chr1	183474956	183475045	+	intron-Distal	3.66299	4.73075	K562	MATR3
chr1	183447743	183447795	+	intron-Distal	4.67754	5.44433	K562	EXOSC5
chr1	183447667	183447707	+	intron-Distal	3.20850	3.15041	K562	EXOSC5
chr1	183508548	183508656	+	intron-Distal	3.28555	3.09339	K562	MATR3
chr1	183441923	183441992	+	intron-Distal	4.12481	6.74265	K562	GTF2F1
chr1	183446390	183446471	+	intron-Distal	4.90796	11.73060	K562	PTBP1
chr1	183499031	183499095	+	intron-Distal	3.66336	6.04886	K562	KHSRP
chr1	183441944	183441990	+	intron-Distal	3.49871	3.49390	K562	DROSHA
chr1	183469393	183469467	+	intron-Distal	3.11132	5.83938	K562	KHSRP
chr1	183442228	183442298	+	intron-Distal	4.51089	4.69321	HepG2	GTF2F1
chr1	183474168	183474237	+	intron-Distal	6.91855	25.52506	K562	PTBP1
chr1	183441930	183442004	+	intron-Distal	4.37288	3.89786	K562	RBFOX2
chr1	183476614	183476733	+	intron-Distal	3.77859	3.94088	HepG2	QKI
chr1	183502967	183503105	+	intron-Distal,intron-Proximal	3.56816	7.42482	K562	KHSRP
chr1	183474516	183474588	+	intron-Distal	4.38211	12.33192	K562	PTBP1
chr1	183501728	183501874	+	intron-Distal	3.13721	5.62342	K562	KHSRP
chr1	183475002	183475043	+	intron-Distal	4.56360	3.42734	K562	PTBP1
chr1	183442365	183442472	+	intron-Distal	5.17312	4.95161	K562	GTF2F1
chr1	183448395	183448491	+	intron-Distal	3.31523	3.84001	K562	HNRNPM
chr1	183468971	183469061	+	intron-Distal	4.18397	9.85516	K562	KHSRP
chr1	183487093	183487162	+	intron-Distal	3.78880	7.11398	HepG2	HNRNPC
chr1	183442187	183442293	+	intron-Distal,intron-Proximal	4.34043	12.62791	HepG2	PRPF4
chr1	183442190	183442300	+	intron-Distal,intron-Proximal	6.09125	15.83315	K562	GTF2F1
chr1	183449413	183449459	+	intron-Distal	4.83032	4.40618	K562	PTBP1
chr1	183442198	183442303	+	intron-Distal,intron-Proximal	3.61021	9.30999	HepG2	FAM120A
chr1	183474504	183474597	+	intron-Distal	3.29766	3.19404	HepG2	PTBP1
chr1	183441785	183441840	+	intron-Proximal	5.24336	4.65563	K562	AQR
chr1	183441817	183441868	+	intron-Proximal	3.13538	3.46580	HepG2	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for SMG7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SMG7 is not available on ENCORE database.
84 RBPs can affect the levels of SMG7.

The Knockdown/knockout RNA-Seq assay for SMG7 is not available on ENCORE database.

84 RBPs can affect the gene expression of SMG7 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SMG7	ENSG00000116698.16	1308.57910	2162.66140	-0.72480	7.53820	6.70490	HepG2	AKAP1
SMG7	ENSG00000116698.16	1962.77540	2664.70770	-0.44110	8.94470	7.82650	HepG2	AUH
SMG7	ENSG00000116698.16	1130.36540	1728.65750	-0.61290	5.69610	4.33150	HepG2	BCCIP
SMG7	ENSG00000116698.16	1701.22300	1951.08770	-0.19770	2.39850	1.77110	HepG2	CKAP4
SMG7	ENSG00000116698.16	1533.06440	3278.25070	-1.09650	23.67590	21.91020	HepG2	CPSF6
SMG7	ENSG00000116698.16	1492.96030	1815.77500	-0.28240	3.05810	1.98620	HepG2	YBX3
SMG7	ENSG00000116698.16	1593.06440	2094.78570	-0.39500	6.12690	5.24110	HepG2	CELF1
SMG7	ENSG00000116698.16	1951.52250	2252.52930	-0.20690	2.97420	2.20940	HepG2	DAZAP1
SMG7	ENSG00000116698.16	1531.76470	1804.93250	-0.23680	2.97000	2.10740	HepG2	DDX19B
SMG7	ENSG00000116698.16	1297.14660	1699.66170	-0.38990	2.73200	1.96270	HepG2	DDX55
SMG7	ENSG00000116698.16	2280.33170	2887.96990	-0.34080	2.91640	1.88050	HepG2	DDX5
SMG7	ENSG00000116698.16	1358.69190	1782.94520	-0.39200	5.34140	4.39180	HepG2	DNAJC21
SMG7	ENSG00000116698.16	2586.46490	3059.55340	-0.24230	3.29760	2.65020	HepG2	ETF1
SMG7	ENSG00000116698.16	1600.34800	2171.19700	-0.44010	2.64120	1.55050	HepG2	FUS
SMG7	ENSG00000116698.16	1029.86370	1320.01600	-0.35810	2.54830	1.69310	HepG2	GEMIN5
SMG7	ENSG00000116698.16	2456.18600	3716.16420	-0.59740	6.51790	5.56340	HepG2	GPKOW
SMG7	ENSG00000116698.16	1314.02800	1800.02650	-0.45400	4.96550	4.13360	HepG2	HNRNPA1
SMG7	ENSG00000116698.16	1424.07560	1791.57750	-0.33120	2.53450	1.86420	HepG2	HNRNPK
SMG7	ENSG00000116698.16	1574.81560	2051.91830	-0.38180	7.71690	6.64030	HepG2	HNRNPL
SMG7	ENSG00000116698.16	2792.44690	3546.40290	-0.34480	2.90730	2.26450	HepG2	HNRNPLL
SMG7	ENSG00000116698.16	1559.61280	1988.96370	-0.35080	5.49850	4.66600	HepG2	HNRNPU
SMG7	ENSG00000116698.16	1202.79990	1539.02390	-0.35560	3.14350	1.84900	HepG2	LIN28B
SMG7	ENSG00000116698.16	1497.43290	2233.59700	-0.57690	10.51430	9.05790	HepG2	NOL12
SMG7	ENSG00000116698.16	1695.46130	1968.72760	-0.21560	2.28720	1.51070	HepG2	PARN
SMG7	ENSG00000116698.16	3237.34140	2570.63200	0.33260	5.43170	4.38260	HepG2	PRPF4
SMG7	ENSG00000116698.16	2871.78120	2132.13040	0.42960	5.04290	4.26750	HepG2	PUF60
SMG7	ENSG00000116698.16	1415.76830	2261.68250	-0.67580	13.09570	11.70210	HepG2	PUM2
SMG7	ENSG00000116698.16	902.54740	1983.66480	-1.13610	9.99630	8.71560	HepG2	RAVER1
SMG7	ENSG00000116698.16	1476.58590	1843.91690	-0.32050	2.81500	2.13510	HepG2	RBM25
SMG7	ENSG00000116698.16	1643.47350	1944.67610	-0.24280	2.59350	1.99410	HepG2	RECQL
SMG7	ENSG00000116698.16	4348.68850	3317.98240	0.39020	4.04010	3.24040	HepG2	RPLP0
SMG7	ENSG00000116698.16	1200.95040	1948.28980	-0.69800	5.18790	3.91710	HepG2	RPS10
SMG7	ENSG00000116698.16	1279.01150	1771.25730	-0.46970	9.38960	8.31320	HepG2	SAFB2
SMG7	ENSG00000116698.16	2403.27580	3311.09690	-0.46230	2.39850	1.77200	HepG2	SF3A3
SMG7	ENSG00000116698.16	2608.14860	3510.24500	-0.42850	4.75310	3.84930	HepG2	SF3B1
SMG7	ENSG00000116698.16	2334.28780	1953.06380	0.25710	3.42430	2.77520	HepG2	SF3B4
SMG7	ENSG00000116698.16	1379.50330	2021.78260	-0.55150	4.01410	2.84290	HepG2	SMNDC1
SMG7	ENSG00000116698.16	2525.67850	3905.76070	-0.62890	4.58390	3.56880	HepG2	SNRNP70
SMG7	ENSG00000116698.16	1584.32660	2888.21860	-0.86630	35.07800	33.82090	HepG2	SRFBP1
SMG7	ENSG00000116698.16	2458.15770	2105.12120	0.22360	2.57470	1.96610	HepG2	SRSF5
SMG7	ENSG00000116698.16	2564.39220	3026.02750	-0.23880	3.23550	2.48940	HepG2	SRSF7
SMG7	ENSG00000116698.16	1253.52640	1691.93740	-0.43270	3.36710	2.62930	HepG2	SUPV3L1
SMG7	ENSG00000116698.16	1183.34630	1832.62970	-0.63100	11.72450	10.69530	HepG2	TAF15
SMG7	ENSG00000116698.16	2795.59850	3456.61400	-0.30620	2.63350	1.92360	HepG2	TARDBP
SMG7	ENSG00000116698.16	1289.37980	1932.63220	-0.58390	5.25350	4.60960	HepG2	TIAL1
SMG7	ENSG00000116698.16	3596.81820	2800.16010	0.36110	3.12970	2.46410	HepG2	U2AF1
SMG7	ENSG00000116698.16	1372.79410	2204.71390	-0.68350	7.48810	6.08640	HepG2	UBE2L3
SMG7	ENSG00000116698.16	741.66900	999.44550	-0.43040	3.21040	2.39410	HepG2	UCHL5
SMG7	ENSG00000116698.16	2615.27200	2936.43650	-0.16710	1.95600	1.35190	HepG2	UPF1
SMG7	ENSG00000116698.16	4247.31080	2835.01440	0.58310	19.08850	17.73440	HepG2	UTP3
SMG7	ENSG00000116698.16	1206.24590	1665.52830	-0.46550	4.16250	3.28080	HepG2	XRN2
SMG7	ENSG00000116698.16	1743.48080	2536.95010	-0.54110	11.62590	10.40780	HepG2	ZC3H8
SMG7	ENSG00000116698.16	3940.94590	3258.52820	0.27420	2.51840	1.39780	K562	AARS
SMG7	ENSG00000116698.16	5859.88490	4254.22060	0.46190	12.75310	11.63090	K562	AGGF1
SMG7	ENSG00000116698.16	5445.17240	4426.69930	0.29860	2.87230	2.20660	K562	AKAP8L
SMG7	ENSG00000116698.16	6376.64900	4755.06740	0.42320	4.91780	4.17530	K562	AQR
SMG7	ENSG00000116698.16	3486.88060	2626.53710	0.40870	4.16520	2.81530	K562	CCAR1
SMG7	ENSG00000116698.16	5184.27130	6151.87700	-0.24690	2.57810	1.81980	K562	CPSF6
SMG7	ENSG00000116698.16	2019.22730	2380.78410	-0.23760	2.41160	1.43510	K562	CSTF2
SMG7	ENSG00000116698.16	7094.81250	8440.54340	-0.25060	2.50290	1.57600	K562	CELF1
SMG7	ENSG00000116698.16	5547.66620	4763.50840	0.21980	2.80960	1.92830	K562	DKC1
SMG7	ENSG00000116698.16	3857.19520	4603.61270	-0.25520	3.43990	2.65150	K562	EIF2S2
SMG7	ENSG00000116698.16	2865.61210	2312.21030	0.30950	4.02500	3.07480	K562	EIF3G
SMG7	ENSG00000116698.16	3400.61430	2768.08870	0.29680	2.67340	1.86630	K562	EIF4A3
SMG7	ENSG00000116698.16	3537.22030	2878.69910	0.29710	4.34750	3.61310	K562	FXR1
SMG7	ENSG00000116698.16	1896.68660	2881.77820	-0.60350	6.91310	4.66510	K562	GEMIN5
SMG7	ENSG00000116698.16	4808.89290	5873.35630	-0.28850	2.84110	2.03550	K562	GPKOW
SMG7	ENSG00000116698.16	4212.29230	6134.84580	-0.54240	9.20640	7.80620	K562	GRSF1
SMG7	ENSG00000116698.16	5542.57340	3566.10640	0.63610	12.69900	11.49650	K562	HNRNPC
SMG7	ENSG00000116698.16	5591.18680	9022.89540	-0.69040	3.97970	3.02980	K562	HSPD1
SMG7	ENSG00000116698.16	5962.31260	4697.86950	0.34380	3.88200	2.88200	K562	KIF1C
SMG7	ENSG00000116698.16	4313.94710	3452.49870	0.32130	2.87630	1.45810	K562	LARP7
SMG7	ENSG00000116698.16	3746.31110	3047.13350	0.29790	3.00040	2.12520	K562	MAGOH
SMG7	ENSG00000116698.16	5840.08570	3688.83550	0.66270	6.63300	5.04820	K562	NAA15
SMG7	ENSG00000116698.16	4774.68100	7553.42410	-0.66170	4.06060	3.04300	K562	PPIG
SMG7	ENSG00000116698.16	2618.54370	3197.31170	-0.28810	2.57590	1.70940	K562	PSIP1
SMG7	ENSG00000116698.16	3568.50740	2960.49520	0.26940	2.64890	1.99670	K562	PTBP1
SMG7	ENSG00000116698.16	9995.51920	7491.19310	0.41600	4.47710	3.44490	K562	PUF60
SMG7	ENSG00000116698.16	6619.39550	7807.17240	-0.23810	2.21840	1.35650	K562	PUM2
SMG7	ENSG00000116698.16	7548.70300	4390.14310	0.78190	15.30800	14.07110	K562	PUS1
SMG7	ENSG00000116698.16	6612.26150	4277.47340	0.62830	16.63870	15.16940	K562	RBM15
SMG7	ENSG00000116698.16	2074.45140	2849.21900	-0.45780	3.79540	2.83540	K562	RPS19
SMG7	ENSG00000116698.16	5150.18440	4214.10280	0.28930	2.92130	1.81010	K562	SAFB
SMG7	ENSG00000116698.16	5756.45210	4356.76080	0.40180	4.35660	2.50240	K562	SDAD1
SMG7	ENSG00000116698.16	3487.75200	5575.73960	-0.67690	10.83040	9.28980	K562	SF3A3
SMG7	ENSG00000116698.16	4189.72990	2956.87690	0.50270	8.66770	7.10830	K562	SF3B4
SMG7	ENSG00000116698.16	6262.97750	3151.19390	0.99090	3.31580	1.92340	K562	SNRNP200
SMG7	ENSG00000116698.16	3509.28350	2902.29360	0.27390	2.71230	2.01150	K562	SRSF1
SMG7	ENSG00000116698.16	5856.36450	4743.61210	0.30390	3.83910	2.87110	K562	SYNCRIP
SMG7	ENSG00000116698.16	3894.46600	3266.72370	0.25350	2.12700	1.31300	K562	TRIM56
SMG7	ENSG00000116698.16	3394.31540	2847.03360	0.25360	2.47700	1.71620	K562	U2AF2
SMG7	ENSG00000116698.16	6181.82740	5331.49170	0.21340	2.14170	1.39000	K562	WDR43
SMG7	ENSG00000116698.16	4517.43790	5356.74480	-0.24590	2.08980	1.35040	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SMG7 is not available on ENCORE database.

24 RBPs can affect the splicing of SMG7 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SMG7	ENSG00000116698.16	chr1	+	183515100	183515472			183514064	183514447	183518342	183518423	-0.13700	0.00009	0.00300	excluded	K562	SRSF1
SE	SMG7	ENSG00000116698.16	chr1	+	183518342	183518423			183515100	183515472	183518898	183519058	-0.09300	0.00078	0.01715	excluded	K562	SF3B4
SE	SMG7	ENSG00000116698.16	chr1	+	183481971	183482003			183441350	183441784	183485008	183485126	-0.21300	0.00447	0.06776	excluded	K562	SF3B4
SE	SMG7	ENSG00000116698.16	chr1	+	183516237	183516387			183515100	183515472	183518342	183518423	-0.14900	0.00000	0.00003	excluded	K562	PRPF8
SE	SMG7	ENSG00000116698.16	chr1	+	183516237	183516387			183515100	183515472	183518342	183518423	-0.15200	0.00000	0.00007	excluded	HepG2	U2AF1
SE	SMG7	ENSG00000116698.16	chr1	+	183516237	183516387			183515100	183515472	183518342	183518423	0.25500	0.00000	0.00002	included	K562	AKAP8L
SE	SMG7	ENSG00000116698.16	chr1	+	183481971	183482003			183441350	183441784	183485008	183485126	0.10400	0.00003	0.00739	included	K562	FMR1
SE	SMG7	ENSG00000116698.16	chr1	+	183516237	183516387			183515100	183515472	183518342	183518423	0.27700	0.00000	0.00018	included	HepG2	QKI
SE	SMG7	ENSG00000116698.16	chr1	+	183496760	183496866			183495730	183495902	183497090	183497162	0.06800	0.00003	0.00052	included	K562	AQR
SE	SMG7	ENSG00000116698.16	chr1	+	183518342	183518423			183514064	183514447	183518898	183519058	-0.10500	0.00031	0.00455	excluded	K562	AQR
SE	SMG7	ENSG00000116698.16	chr1	+	183518342	183518423			183515100	183515472	183518898	183519058	-0.11200	0.00000	0.00005	excluded	K562	PUS1
SE	SMG7	ENSG00000116698.16	chr1	+	183516237	183516387			183515100	183515472	183518342	183518423	0.30800	0.00000	0.00036	included	HepG2	PTBP1
SE	SMG7	ENSG00000116698.16	chr1	+	183516237	183516387			183515100	183515472	183518342	183518423	0.27400	0.00000	0.00008	included	HepG2	FTO
SE	SMG7	ENSG00000116698.16	chr1	+	183516237	183516387			183515100	183515472	183518342	183518423	-0.11100	0.00047	0.02907	excluded	K562	EFTUD2
SE	SMG7	ENSG00000116698.16	chr1	+	183516237	183516387			183515100	183515472	183518342	183518423	-0.12400	0.00100	0.04274	excluded	HepG2	MATR3
SE	SMG7	ENSG00000116698.16	chr1	+	183518342	183518423			183515100	183515472	183518898	183519058	-0.14300	0.00001	0.00028	excluded	K562	U2AF1
SE	SMG7	ENSG00000116698.16	chr1	+	183518342	183518423			183515100	183515472	183518898	183519058	-0.05400	0.00087	0.05733	excluded	K562	HNRNPL
SE	SMG7	ENSG00000116698.16	chr1	+	183516237	183516387			183515100	183515472	183518342	183518423	-0.16600	0.00000	0.00003	excluded	HepG2	SRSF1
SE	SMG7	ENSG00000116698.16	chr1	+	183516237	183516387			183515100	183515472	183518342	183518423	0.15200	0.00115	0.03790	included	K562	UTP18
SE	SMG7	ENSG00000116698.16	chr1	+	183518342	183518423			183515100	183515472	183518898	183519058	-0.09000	0.00025	0.01199	excluded	K562	UTP18
SE	SMG7	ENSG00000116698.16	chr1	+	183518342	183518423			183515100	183515472	183518898	183519058	-0.13600	0.00019	0.00497	excluded	K562	U2AF2
SE	SMG7	ENSG00000116698.16	chr1	+	183518342	183518423			183515100	183515472	183518898	183519058	-0.12400	0.00000	0.00007	excluded	K562	RBM15
SE	SMG7	ENSG00000116698.16	chr1	+	183518342	183518423			183515100	183515472	183518898	183519058	-0.16800	0.00000	0.00000	excluded	K562	AGGF1
SE	SMG7	ENSG00000116698.16	chr1	+	183518342	183518423			183515100	183515472	183518898	183519058	-0.12100	0.00004	0.05915	excluded	K562	PABPC4
SE	SMG7	ENSG00000116698.16	chr1	+	183516237	183516387			183515100	183515472	183518342	183518423	0.19500	0.00000	0.00041	included	K562	PTBP1
SE	SMG7	ENSG00000116698.16	chr1	+	183515100	183515472			183514064	183514447	183518342	183518423	-0.13100	0.00000	0.00001	excluded	K562	HNRNPC
A3SS	SMG7	ENSG00000116698.16	chr1	+	183486760	183486955			183486822	183486955	183485008	183485126	0.07800	0.00096	0.09500	longer	K562	EFTUD2
A3SS	SMG7	ENSG00000116698.16	chr1	+	183486760	183486955			183486822	183486955	183485008	183485126	0.21300	0.00000	0.00000	longer	K562	SF3B4
A3SS	SMG7	ENSG00000116698.16	chr1	+	183520952	183521066			183520966	183521066	183520179	183520325	-0.10900	0.00040	0.02499	shorter	K562	SF3B4
A3SS	SMG7	ENSG00000116698.16	chr1	+	183515085	183515264			183515100	183515264	183514064	183514447	0.30500	0.00000	0.00000	longer	K562	AQR
A3SS	SMG7	ENSG00000116698.16	chr1	+	183506254	183506350			183506279	183506350	183502836	183502967	0.14500	0.00000	0.00000	longer	K562	AQR
A3SS	SMG7	ENSG00000116698.16	chr1	+	183520934	183521066			183520952	183521066	183520179	183520325	0.08300	0.00000	0.00000	longer	K562	AQR
A3SS	SMG7	ENSG00000116698.16	chr1	+	183513462	183513632			183513487	183513632	183511210	183511499	0.05100	0.00001	0.00006	longer	K562	AQR
A3SS	SMG7	ENSG00000116698.16	chr1	+	183498005	183498177			183498026	183498177	183497090	183497162	0.09900	0.00001	0.00013	longer	K562	AQR
A3SS	SMG7	ENSG00000116698.16	chr1	+	183486760	183486955			183486822	183486955	183485008	183485126	0.07700	0.00000	0.00005	longer	K562	AQR
A3SS	SMG7	ENSG00000116698.16	chr1	+	183502768	183502967			183502810	183502967	183502298	183502461	0.08300	0.00000	0.00000	longer	K562	AQR
A5SS	SMG7	ENSG00000116698.16	chr1	+	183511210	183511637			183511210	183511499	183513487	183513632	0.11500	0.00000	0.00000	longer	K562	PUS1
A5SS	SMG7	ENSG00000116698.16	chr1	+	183511210	183511637			183511210	183511499	183513487	183513632	0.12900	0.00007	0.00183	longer	K562	AQR
A5SS	SMG7	ENSG00000116698.16	chr1	+	183511210	183511637			183511210	183511499	183513487	183513632	0.06400	0.00065	0.05535	longer	K562	AGGF1
A5SS	SMG7	ENSG00000116698.16	chr1	+	183511210	183511637			183511210	183511499	183513487	183513632	-0.06700	0.00005	0.03614	shorter	K562	WDR3
A5SS	SMG7	ENSG00000116698.16	chr1	+	183511210	183511637			183511210	183511499	183513487	183513632	0.10800	0.00027	0.04843	longer	HepG2	HNRNPUL1
A5SS	SMG7	ENSG00000116698.16	chr1	+	183511210	183511637			183511210	183511499	183513487	183513632	-0.08000	0.00177	0.08223	shorter	K562	SRSF1
A5SS	SMG7	ENSG00000116698.16	chr1	+	183511210	183511637			183511210	183511499	183513487	183513632	0.10300	0.00002	0.01788	longer	K562	PUM1
A5SS	SMG7	ENSG00000116698.16	chr1	+	183511210	183511637			183511210	183511499	183513487	183513632	0.06500	0.00009	0.09077	longer	K562	FTO
MXE	SMG7	ENSG00000116698.16	chr1	+	183515100	183515472	183518342	183518423	183514064	183514447	183518898	183519058	0.11800	0.00046	0.01124	1included	K562	PUS1
MXE	SMG7	ENSG00000116698.16	chr1	+	183518342	183518423	183518898	183519058	183515100	183515472	183519885	183520056	-0.12800	0.00010	0.00116	2included	K562	AQR
MXE	SMG7	ENSG00000116698.16	chr1	+	183518342	183518423	183518898	183519058	183515100	183515472	183519885	183520056	-0.14700	0.00004	0.00110	2included	K562	U2AF2
MXE	SMG7	ENSG00000116698.16	chr1	+	183515100	183515472	183518342	183518423	183514064	183514447	183518898	183519058	0.14700	0.00000	0.00001	1included	HepG2	U2AF2
MXE	SMG7	ENSG00000116698.16	chr1	+	183518342	183518423	183518898	183519058	183515100	183515472	183519885	183520056	-0.07600	0.00356	0.02305	2included	HepG2	U2AF2
MXE	SMG7	ENSG00000116698.16	chr1	+	183516237	183516387	183518342	183518423	183515100	183515472	183518898	183519058	-0.05600	0.00002	0.00748	2included	K562	UPF1
MXE	SMG7	ENSG00000116698.16	chr1	+	183516237	183516387	183518342	183518423	183515100	183515472	183518898	183519058	0.09900	0.00005	0.00415	1included	K562	AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SMG7

General Information

Functions

Localization

Domains (AlphaFold: SMG7)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SMG7 is not avaliable on ENCORE database.

45 proteins are bound to SMG7 RNA:

eCLIP assay for SMG7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SMG7 is not available on ENCORE database.

84 RBPs can affect the gene expression of SMG7 :

The Knockdown/knockout RNA-Seq assay for SMG7 is not available on ENCORE database.

24 RBPs can affect the splicing of SMG7 :

The Knockdown/knockout RNA-Seq assay for SMG7 is not avaliable on ENCORE database.