LRIF1

General Information

Gene Name : LRIF1
Gene ID : ENSG00000121931.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LRIF1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LRIF1	ENSG00000121931.15	14.92	11.57	13.25	ENCSR000AEF
HepG2	LRIF1	ENSG00000121931.15	16.90	33.33	25.11	ENCSR985KAT
K562	LRIF1	ENSG00000121931.15	48.53	49.81	49.17	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LRIF1 is not avaliable on ENCORE database.

Proteins bound to RNA

LRIF1 RNA is bound by 27 proteins.

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eCLIP assay for LRIF1 is not avaliable on ENCORE database.

27 proteins are bound to LRIF1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	111489836	111489911	-	3'-UTR,intron-Distal,intron-Proximal	5.35331	400.00000	K562	PUM2
chr1	111490118	111490179	-	3'-UTR,intron-Distal	3.56833	23.25127	K562	PUM2
chr1	111494224	111494300	-	CDS,intron-Distal	3.58122	16.80421	K562	PUM2
chr1	111500395	111500461	-	intron-Distal	4.06787	13.27907	K562	KHSRP
chr1	111490885	111490898	-	CDS,intron-Distal	3.76729	12.63512	K562	YBX3
chr1	111490870	111490874	-	CDS,intron-Distal	3.92264	12.02158	K562	YBX3
chr1	111490874	111490885	-	CDS,intron-Distal	3.62707	12.01639	K562	YBX3
chr1	111506104	111506167	-	intron-Distal	5.71301	11.79327	K562	RBM15
chr1	111495170	111495260	-	5'-UTR,CDS,intron-Distal	3.93857	11.16007	K562	IGF2BP1
chr1	111490473	111490532	-	3'-UTR,intron-Distal	4.75407	11.13876	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 82 entries

eCLIP assay for LRIF1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LRIF1 is not available on ENCORE database.
64 RBPs can affect the levels of LRIF1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LRIF1 is not available on ENCORE database.

64 RBPs can affect the gene expression of LRIF1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LRIF1	ENSG00000121931.11	7255.50730	3536.02850	1.03680	26.57850	24.95660	K562	AQR
LRIF1	ENSG00000121931.11	1928.60420	3360.27680	-0.80100	16.88810	14.97930	K562	GRSF1
LRIF1	ENSG00000121931.11	1769.56560	3177.31290	-0.84440	15.20030	13.96870	K562	PUS1
LRIF1	ENSG00000121931.11	1461.94640	898.38340	0.70240	14.98010	13.40370	HepG2	PRPF4
LRIF1	ENSG00000121931.11	2015.34220	1282.67580	0.65180	13.57940	12.60520	HepG2	RBM22
LRIF1	ENSG00000121931.11	2365.60850	1239.60460	0.93220	11.55770	10.24630	HepG2	U2AF1
LRIF1	ENSG00000121931.11	1894.83190	2634.62960	-0.47550	10.66790	9.18930	K562	MTPAP
LRIF1	ENSG00000121931.11	2251.77600	3078.84140	-0.45130	9.78350	8.79920	K562	AGGF1
LRIF1	ENSG00000121931.11	822.25940	1182.05940	-0.52360	9.54880	8.36850	HepG2	HNRNPL
LRIF1	ENSG00000121931.11	2178.32030	3095.67100	-0.50700	9.37930	8.31090	K562	RBM15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 71 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LRIF1 is not available on ENCORE database.

16 RBPs can affect the splicing of LRIF1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	LRIF1	ENSG00000121931.11	chr1	-	111493909	111495437	111492472	111492745	111506242	111506701	-0.22600	0.00000	0.00043	excluded	HepG2	AKAP1
SE	LRIF1	ENSG00000121931.11	chr1	-	111493909	111495437	111492472	111492745	111506242	111506701	0.24900	0.00000	0.00019	included	K562	EFTUD2
SE	LRIF1	ENSG00000121931.11	chr1	-	111493909	111495437	111492472	111492745	111506242	111506701	0.35400	0.00000	0.00000	included	K562	HNRNPL
SE	LRIF1	ENSG00000121931.11	chr1	-	111493909	111495437	111492472	111492745	111506242	111506701	0.23500	0.00000	0.00012	included	K562	U2AF2
SE	LRIF1	ENSG00000121931.11	chr1	-	111493909	111495437	111492472	111492745	111506242	111506701	-0.37300	0.00000	0.00111	excluded	HepG2	YBX3
SE	LRIF1	ENSG00000121931.11	chr1	-	111493909	111495437	111492472	111492745	111506242	111506701	-0.23800	0.00001	0.00567	excluded	HepG2	BCLAF1
SE	LRIF1	ENSG00000121931.11	chr1	-	111493909	111495437	111492472	111492745	111506242	111506701	0.22900	0.00001	0.00048	included	K562	U2AF1
SE	LRIF1	ENSG00000121931.11	chr1	-	111493909	111495437	111492472	111492745	111506242	111506701	0.15100	0.00001	0.00452	included	K562	ZC3H8
SE	LRIF1	ENSG00000121931.11	chr1	-	111493909	111495437	111492472	111492745	111506242	111506701	-0.21000	0.00002	0.00214	excluded	HepG2	MATR3
SE	LRIF1	ENSG00000121931.11	chr1	-	111493909	111495437	111492472	111492745	111506242	111506701	0.21200	0.00005	0.00712	included	K562	SUPV3L1

Showing 1 to 10 of 16 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LRIF1

General Information

Functions

Localization

Domains (AlphaFold: LRIF1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LRIF1 is not avaliable on ENCORE database.

27 proteins are bound to LRIF1 RNA:

eCLIP assay for LRIF1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LRIF1 is not available on ENCORE database.

64 RBPs can affect the gene expression of LRIF1 :

The Knockdown/knockout RNA-Seq assay for LRIF1 is not available on ENCORE database.

16 RBPs can affect the splicing of LRIF1 :

The Knockdown/knockout RNA-Seq assay for LRIF1 is not avaliable on ENCORE database.