USF2

General Information

Gene Name       : USF2
Gene ID             : ENSG00000105698.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: USF2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878USF2ENSG00000105698.1529.7446.8838.31ENCSR000AEF
HepG2USF2ENSG00000105698.15107.5856.8082.19ENCSR985KAT
K562USF2ENSG00000105698.1541.3339.3040.31ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for USF2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • USF2 RNA is bound by 28 proteins.  







eCLIP assay for USF2 is not avaliable on ENCORE database.





28 proteins are bound to USF2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193576134935761422+3'-UTR,CDS,intron-Distal,intron-Proximal4.073847.12207HepG2GRWD1
chr193577035835770432+3'-UTR3.2922710.23113K562DDX55
chr193576668535766854+3'-UTR,CDS,intron-Distal,intron-Proximal4.012226.02743K562HNRNPM
chr193577048535770563+3'-UTR3.377545.38978HepG2PABPN1
chr193577064435770711+3'-UTR5.7040921.87517K562PABPC4
chr193577058835770626+3'-UTR3.428336.89681K562PABPC4
chr193577044135770483+3'-UTR4.235696.57313K562PABPC4
chr193577036735770420+3'-UTR3.650528.91491K562PABPC4
chr193576962435769658+3'-UTR,CDS3.288483.09251K562METAP2
chr193576962135769693+3'-UTR,CDS3.237854.74027K562YBX3
chr193577028235770358+3'-UTR3.6241411.34330K562DDX55
chr193576960835769701+3'-UTR,CDS,intron-Proximal3.189485.34771K562DDX24
chr193577052235770575+3'-UTR4.5233215.36764K562PABPC4
chr193577041835770481+3'-UTR3.168913.82829K562IGF2BP2
chr193576129335761365+3'-UTR,CDS,intron-Distal,intron-Proximal5.7381613.78026HepG2SF3A3
chr193576137535761423+3'-UTR,CDS,intron-Distal3.023905.47500HepG2PPIG
chr193576090335760957+3'-UTR,CDS,intron-Distal,intron-Proximal4.390013.93614HepG2AQR
chr193576959935769698+3'-UTR,CDS,intron-Proximal3.123118.23345K562UCHL5
chr193576090535761042+3'-UTR,CDS,intron-Distal,intron-Proximal3.3640116.97400HepG2PRPF8
chr193575998735760066+5'-UTR,CDS3.876949.84066HepG2DDX59
chr193575988435759925+5'-UTR4.734194.17937HepG2PCBP2
chr193575999835760068+5'-UTR,CDS,intron-Proximal3.163905.37861K562GEMIN5
chr193576000135760065+5'-UTR,CDS4.708423.78681HepG2PCBP2
chr193576000035760067+5'-UTR,CDS,intron-Proximal3.216544.45327K562ILF3
chr193576166535761750+CDS,intron-Proximal4.6436630.55566HepG2PRPF8
chr193576198235762045+CDS,intron-Proximal3.654907.25346K562UCHL5
chr193576093935761004+CDS,intron-Distal,intron-Proximal3.616439.98720K562EFTUD2
chr193576095835761055+CDS,intron-Distal,intron-Proximal3.093457.28781K562PRPF8
chr193576047835760541+CDS,intron-Proximal4.557713.27332K562DDX6
chr193576129835761347+CDS,intron-Distal,intron-Proximal5.069206.02529K562SF3B4
chr193576001035760058+CDS4.257088.50867K562PABPC4
chr193576048135760559+CDS,intron-Proximal3.900774.73981K562METAP2
chr193576975535769843+CDS,intron-Proximal4.386285.04056HepG2RBFOX2
chr193576203735762086+CDS,intron-Proximal3.856037.56654HepG2PRPF8
chr193576158235761625+CDS,intron-Proximal4.075184.22551K562SF3B4
chr193576090835761027+CDS,intron-Distal,intron-Proximal3.941803.27165HepG2RBFOX2
chr193576093535761031+CDS,intron-Distal,intron-Proximal5.2562651.40257HepG2EFTUD2
chr193576093035761038+CDS,intron-Distal,intron-Proximal3.085466.76988K562BUD13
chr193576057435760601+CDS3.167933.73413HepG2PPIG
chr193576092335760954+CDS,intron-Distal,intron-Proximal3.319794.83230K562AQR
chr193576283235762887+intron-Distal3.944983.91585HepG2PRPF4
chr193576359435763694+intron-Distal4.635444.70168K562CSTF2T
chr193576288435762961+intron-Distal3.247833.00221HepG2CSTF2T
chr193576426135764369+intron-Distal3.896753.33944K562MATR3
chr193576828535768340+intron-Distal4.190894.43799HepG2CSTF2T
chr193576427335764343+intron-Distal4.396104.78106HepG2PTBP1
chr193576182235761861+intron-Distal4.997354.24111K562EFTUD2
chr193576573935765801+intron-Distal3.719383.42785HepG2HNRNPM
chr193576360535763694+intron-Distal4.089493.02711K562EWSR1
chr193576838035768489+intron-Distal4.781396.05659HepG2CSTF2T
chr193576343635763483+intron-Distal4.069763.87340HepG2CSTF2T
chr193576175635761795+intron-Proximal3.238873.50696K562BUD13
chr193576950435769582+intron-Proximal3.531944.05505HepG2SF3B4
chr193576951235769577+intron-Proximal4.285686.53298K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for USF2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for USF2 is not available on ENCORE database.

  • 79 RBPs can affect the levels of USF2.  








The Knockdown/knockout RNA-Seq assay for USF2 is not available on ENCORE database.





79 RBPs can affect the gene expression of USF2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
USF2ENSG00000105698.11489.96580654.53400-0.417802.764001.69240HepG2AATF
USF2ENSG00000105698.112022.277701605.228000.333102.155401.32170HepG2ABCF1
USF2ENSG00000105698.11860.60880609.243600.498203.292802.21160HepG2ADAR
USF2ENSG00000105698.11877.630601545.84940-0.816705.250804.54690HepG2AKAP1
USF2ENSG00000105698.11504.13270644.70490-0.354802.136901.34310HepG2BCLAF1
USF2ENSG00000105698.111598.329601147.005200.478604.789304.02930HepG2BOP1
USF2ENSG00000105698.11586.70720911.28080-0.635307.282606.11110HepG2CALR
USF2ENSG00000105698.111637.448101215.130800.430203.063802.25230HepG2CIRBP
USF2ENSG00000105698.11460.49500670.18460-0.541403.079801.62210HepG2CSTF2T
USF2ENSG00000105698.11521.67300729.62300-0.484003.245002.41660HepG2DDX55
USF2ENSG00000105698.111343.766801086.559100.306402.472601.82660HepG2DKC1
USF2ENSG00000105698.11488.52920664.98450-0.444902.396801.37040HepG2AGO1
USF2ENSG00000105698.111482.458301121.476100.402503.860702.90950HepG2EIF4G2
USF2ENSG00000105698.111205.344601620.84170-0.427302.925702.13460HepG2FIP1L1
USF2ENSG00000105698.11799.21470619.297100.367902.495001.87870HepG2HNRNPA1
USF2ENSG00000105698.111399.896901182.253800.243702.620901.92240HepG2HNRNPF
USF2ENSG00000105698.11891.786201139.00330-0.353002.408101.81570HepG2HNRNPLL
USF2ENSG00000105698.111434.146501164.189500.300802.911302.16940HepG2IGF2BP1
USF2ENSG00000105698.11683.459101206.86750-0.820302.578301.63060HepG2IGF2BP3
USF2ENSG00000105698.112601.740901881.503100.467503.353302.43830HepG2LARP4
USF2ENSG00000105698.11806.646101311.56860-0.7013010.118608.66890HepG2MSI2
USF2ENSG00000105698.111198.03230788.411100.603503.222702.25980HepG2PABPC1
USF2ENSG00000105698.11887.582601315.44890-0.567609.741708.71550HepG2PCBP1
USF2ENSG00000105698.11834.95320610.369600.451903.089002.31360HepG2PPIL4
USF2ENSG00000105698.11920.634601338.56850-0.540008.921708.05280HepG2PTBP1
USF2ENSG00000105698.111088.651701449.59620-0.413104.660703.88150HepG2QKI
USF2ENSG00000105698.111055.796801315.64200-0.317402.367801.73870HepG2RBM25
USF2ENSG00000105698.111287.619001489.65670-0.210301.801101.34430HepG2NELFE
USF2ENSG00000105698.111569.780901273.471900.301702.525901.86810HepG2RPLP0
USF2ENSG00000105698.11926.99150609.409200.605006.568805.63970HepG2SAFB2
USF2ENSG00000105698.11846.778901127.32380-0.412803.039302.30030HepG2SF3B1
USF2ENSG00000105698.111130.649701393.53290-0.301603.213302.58210HepG2SF3B4
USF2ENSG00000105698.111331.037801077.143700.305202.705002.00970HepG2SLBP
USF2ENSG00000105698.11684.685601254.36860-0.873407.041905.78960HepG2SNRNP70
USF2ENSG00000105698.111143.673301505.28010-0.396405.673005.02680HepG2SRFBP1
USF2ENSG00000105698.111055.693301454.58330-0.462407.007606.33800HepG2SRSF1
USF2ENSG00000105698.11931.980901183.41250-0.344604.105703.45810HepG2SRSF9
USF2ENSG00000105698.11984.950301307.53770-0.408704.572603.87960HepG2TAF15
USF2ENSG00000105698.11923.592001201.34130-0.379303.479902.54620HepG2TIA1
USF2ENSG00000105698.11619.68990428.988100.530503.405702.56810HepG2UCHL5
USF2ENSG00000105698.111111.270901418.81570-0.352504.313003.59120HepG2UTP3
USF2ENSG00000105698.111107.02530714.933400.630705.092004.11580HepG2XRN2
USF2ENSG00000105698.112792.215201868.932700.579108.098607.19790K562AGGF1
USF2ENSG00000105698.113077.466702053.876600.583307.473005.65230K562AKAP8
USF2ENSG00000105698.112900.125201944.758900.576404.202503.39500K562AKAP8L
USF2ENSG00000105698.111802.063801413.905500.349903.146102.52780K562AQR
USF2ENSG00000105698.111504.27780979.679600.618606.686805.31290K562BOP1
USF2ENSG00000105698.11935.68510679.902600.460603.816702.53770K562CCAR1
USF2ENSG00000105698.112114.094201456.231800.537702.866301.78080K562CNOT7
USF2ENSG00000105698.111313.602401041.706000.334502.896102.09530K562CPSF6
USF2ENSG00000105698.111739.555501378.462400.335604.094802.60250K562DDX21
USF2ENSG00000105698.111239.38930878.620900.496205.635404.08240K562DDX3X
USF2ENSG00000105698.111018.15750826.670700.300502.640601.52290K562EIF4B
USF2ENSG00000105698.111027.75320801.281300.359003.361201.90970K562EWSR1
USF2ENSG00000105698.111679.417201038.380700.693509.344207.68360K562FIP1L1
USF2ENSG00000105698.111482.084201059.861700.483704.572203.47030K562FMR1
USF2ENSG00000105698.111174.31790898.306900.386402.767901.85340K562FTO
USF2ENSG00000105698.11181.16830471.39100-1.379604.893203.89170K562G3BP2
USF2ENSG00000105698.111280.49640994.593300.364402.973002.14990K562GPKOW
USF2ENSG00000105698.111924.758301552.899800.309602.691001.94390K562GRSF1
USF2ENSG00000105698.112251.075901385.097100.700503.386301.99130K562HNRNPA2B1
USF2ENSG00000105698.111297.56630854.022400.603405.385504.03290K562HNRNPM
USF2ENSG00000105698.111465.045601209.939800.275902.529801.67480K562HNRNPU
USF2ENSG00000105698.111786.464301407.908700.343502.661401.88020K562HSPD1
USF2ENSG00000105698.11944.05520703.182900.424902.533401.56620K562IGF2BP2
USF2ENSG00000105698.112580.533202063.701000.322302.904802.05720K562KIF1C
USF2ENSG00000105698.111291.99330849.205100.605304.539403.30840K562KRR1
USF2ENSG00000105698.112473.972701975.611000.324402.841801.74830K562MAK16
USF2ENSG00000105698.111308.45360970.825400.430504.253803.15240K562METAP2
USF2ENSG00000105698.111951.008701664.759800.228803.308102.49870K562NSUN2
USF2ENSG00000105698.112138.722401211.646200.819704.459103.12120K562PABPN1
USF2ENSG00000105698.111137.811901561.17780-0.456402.675101.85860K562PCBP3
USF2ENSG00000105698.11881.347301197.42240-0.442103.591802.67290K562POLR2G
USF2ENSG00000105698.111774.599201178.680200.590206.755105.37490K562PPIG
USF2ENSG00000105698.113528.462401928.311800.8716010.698009.67780K562PUS1
USF2ENSG00000105698.112556.345901879.143900.443903.004002.39100K562RBM15
USF2ENSG00000105698.11899.50040703.546100.354402.670301.97410K562SRSF1
USF2ENSG00000105698.111189.85350939.505300.340702.701601.66930K562SRSF4
USF2ENSG00000105698.111234.33740711.928900.793803.748002.91940K562TARDBP
USF2ENSG00000105698.111024.75780686.763600.577305.739804.49470K562TIA1
USF2ENSG00000105698.11891.13140674.169500.402402.651701.58580K562TRA2A
USF2ENSG00000105698.111513.727001765.18240-0.221702.234001.58410K562UPF1
USF2ENSG00000105698.112118.900101675.497800.338603.366201.93340K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for USF2 is not available on ENCORE database.





12 RBPs can affect the splicing of USF2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUSF2ENSG00000105698.11chr19+357607053576090635760483357606023576134935761500-0.316000.000000.00001excludedHepG2U2AF1
SEUSF2ENSG00000105698.11chr19+3576070535760825357604833576060235761661357617080.337000.000020.02449includedK562UTP3
SEUSF2ENSG00000105698.11chr19+357607053576090635760483357606023576134935761500-0.219000.000020.00045excludedK562AQR
SEUSF2ENSG00000105698.11chr19+3576070535760906357604833576060235761349357615000.342000.000040.02093includedHepG2XPO5
SEUSF2ENSG00000105698.11chr19+3576070535760825357604833576060235761661357617080.263000.000160.02522includedK562CPSF6
SEUSF2ENSG00000105698.11chr19+3576070535760825357604833576060235761661357617080.230000.000050.07652includedK562CPEB4
RIUSF2ENSG00000105698.11chr19+3576070535761500357607053576090635761349357615000.182000.000230.01573includedHepG2BCCIP
RIUSF2ENSG00000105698.11chr19+3576070535761500357607053576090635761349357615000.193000.000470.00799includedHepG2PRPF8
RIUSF2ENSG00000105698.11chr19+357696003576997735769600357696953576987235769977-0.067000.008830.08104excludedHepG2PRPF8
RIUSF2ENSG00000105698.11chr19+3576070535761500357607053576090635761349357615000.163000.000080.00159includedHepG2QKI
RIUSF2ENSG00000105698.11chr19+3576070535761500357607053576090635761349357615000.154000.000840.01042includedHepG2TAF15
RIUSF2ENSG00000105698.11chr19+3576960035769977357696003576969535769872357699770.061000.002810.02809includedHepG2U2AF1
RIUSF2ENSG00000105698.11chr19+3576070535761500357607053576090635761349357615000.122000.000450.05639includedK562HNRNPL
RIUSF2ENSG00000105698.11chr19+3576070535761500357607053576090635761349357615000.162000.003120.02389includedHepG2SF3B4
RIUSF2ENSG00000105698.11chr19+3576070535761500357607053576090635761349357615000.208000.000000.00000includedK562AQR
RIUSF2ENSG00000105698.11chr19+3576960035769977357696003576969535769848357699770.135000.000000.00000includedK562AQR
MXEUSF2ENSG00000105698.11chr19+35760705357609063576134935761500357604833576060235761620357617080.138000.000040.003461includedHepG2XPO5

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for USF2 is not avaliable on ENCORE database.