UBFD1

General Information

Gene Name       : UBFD1
Gene ID             : ENSG00000103353.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: UBFD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UBFD1ENSG00000103353.1514.9815.9115.45ENCSR000AEF
HepG2UBFD1ENSG00000103353.1562.1970.7866.48ENCSR985KAT
K562UBFD1ENSG00000103353.1520.9622.8821.92ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UBFD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • UBFD1 RNA is bound by 28 proteins.  







eCLIP assay for UBFD1 is not avaliable on ENCORE database.





28 proteins are bound to UBFD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr162358423123584265+3'-UTR3.309784.29172K562YBX3
chr162358449523584547+3'-UTR3.6689325.39730K562UPF1
chr162358246223582513+3'-UTR3.248765.23161K562TIA1
chr162358418323584231+3'-UTR3.6018110.87798K562YBX3
chr162358252123582601+3'-UTR3.166257.90868HepG2IGF2BP1
chr162358519123585237+3'-UTR3.956003.19379HepG2AKAP1
chr162358507323585177+3'-UTR3.840115.37876HepG2AKAP1
chr162358472323584796+3'-UTR3.092836.45766HepG2IGF2BP1
chr162358516723585237+3'-UTR3.124318.55824K562UPF1
chr162358332323583381+3'-UTR3.476624.76828K562IGF2BP1
chr162358525123585305+3'-UTR3.011863.57638HepG2HNRNPM
chr162358520523585242+3'-UTR4.696525.67997HepG2UPF1
chr162358507823585173+3'-UTR3.3278011.79282HepG2SUGP2
chr162358442623584466+3'-UTR3.888375.69993HepG2IGF2BP3
chr162358526223585319+3'-UTR3.048253.93186HepG2MATR3
chr162358507423585143+3'-UTR4.9814312.67045K562UPF1
chr162358560123585684+3'-UTR3.9457010.20013HepG2FUBP3
chr162358392723583974+3'-UTR3.827297.57655HepG2IGF2BP3
chr162358297523583006+3'-UTR4.628765.64948HepG2UPF1
chr162358467023584697+3'-UTR3.729376.02668HepG2SUGP2
chr162358508123585134+3'-UTR4.427874.09791K562IGF2BP2
chr162358509823585148+3'-UTR3.542925.12973HepG2MATR3
chr162358275023582794+3'-UTR3.198713.68605HepG2AKAP1
chr162358508223585151+3'-UTR3.312524.63302K562HNRNPM
chr162358516523585216+3'-UTR3.121076.21294HepG2HNRNPM
chr162358517623585238+3'-UTR4.108546.63948HepG2MATR3
chr162358397423584027+3'-UTR3.906468.35929HepG2IGF2BP3
chr162358446223584557+3'-UTR4.3478017.60577HepG2UPF1
chr162358552223585596+3'-UTR3.494874.46957K562TIA1
chr162358360523583693+3'-UTR3.162905.55379HepG2MATR3
chr162358448323584540+3'-UTR4.823486.57406HepG2IGF2BP3
chr162358323923583323+3'-UTR5.249169.67604K562IGF2BP1
chr162358270423582829+3'-UTR4.5828017.11020HepG2UPF1
chr162358250123582594+3'-UTR4.0385314.81859HepG2UPF1
chr162358315423583201+3'-UTR3.867273.27788HepG2IGF2BP3
chr162358515123585217+3'-UTR3.116566.35404K562HNRNPM
chr162358454723584575+3'-UTR4.190137.12652K562UPF1
chr162358442523584469+3'-UTR4.057505.10201HepG2IGF2BP1
chr162358298123583028+3'-UTR4.076824.20872K562IGF2BP1
chr162358563223585694+3'-UTR4.231763.04397HepG2TIA1
chr162358363723583680+3'-UTR3.634148.64357K562UPF1
chr162358446823584495+3'-UTR3.3537918.64418K562UPF1
chr162358508123585146+3'-UTR4.780408.33726HepG2IGF2BP3
chr162358434323584412+3'-UTR4.424464.77152K562IGF2BP1
chr162358442223584487+3'-UTR4.2893711.90318K562IGF2BP1
chr162358472123584785+3'-UTR4.5251111.04592HepG2UPF1
chr162358508323585170+3'-UTR4.1287612.16751HepG2UPF1
chr162358324223583343+3'-UTR3.0320415.59183K562UPF1
chr162358444523584468+3'-UTR3.545377.91779K562UPF1
chr162358448723584548+3'-UTR3.701945.55412K562IGF2BP1
chr162358551523585601+3'-UTR3.620385.80402HepG2FUBP3
chr162356926323569336+5'-UTR,CDS,intron-Proximal3.978527.92085HepG2SRSF1
chr162357090323570978+CDS3.415318.95550HepG2GRWD1
chr162357830723578380+CDS,intron-Proximal3.321423.97184HepG2G3BP1
chr162357405023574105+CDS,intron-Proximal5.7348210.44569K562AQR
chr162357076223570835+CDS,intron-Proximal3.789753.06676K562U2AF2
chr162357075223570831+CDS,intron-Proximal3.624757.17852HepG2AQR
chr162357092123570998+CDS,intron-Proximal3.166663.80498K562PUM1
chr162357394523574006+CDS,intron-Proximal4.266544.96821K562PUM2
chr162356950923569600+CDS3.215889.17679HepG2GRWD1
chr162357096823571003+CDS,intron-Proximal3.366434.44630K562ZNF622
chr162356959523569642+CDS,intron-Proximal3.452575.40420HepG2AQR
chr162357077723570828+CDS,intron-Proximal3.070586.55928HepG2PRPF8
chr162357392423573959+CDS,intron-Proximal3.493206.26686K562SF3B4
chr162357075123570827+CDS,intron-Proximal3.116377.11994HepG2U2AF2
chr162357075723570845+CDS,intron-Proximal3.761176.21987K562AQR
chr162356959823569668+CDS,intron-Proximal4.404899.03062K562AQR
chr162357402423574111+CDS,intron-Proximal4.1485110.59445HepG2PRPF8
chr162357091223571002+CDS,intron-Proximal3.660525.88081K562ZNF800
chr162356943623569499+CDS3.478935.53307K562ZNF622
chr162357717023577223+intron-Distal3.748564.09699HepG2HNRNPK
chr162356916023569231+intron-Distal,intron-Proximal3.369307.07421HepG2BUD13
chr162357266723572744+intron-Distal4.1462812.34582HepG2U2AF2
chr162357516723575257+intron-Distal3.439563.59771HepG2QKI
chr162357117823571225+intron-Distal4.422734.45914HepG2PRPF8
chr162356908823569192+intron-Distal,intron-Proximal3.074995.54036HepG2AQR
chr162357650923576562+intron-Distal3.735653.96925HepG2ILF3
chr162357647423576563+intron-Distal3.357023.61097K562ILF3
chr162357722423577290+intron-Distal3.177615.37989HepG2HNRNPK
chr162356916923569269+intron-Distal,intron-Proximal4.3247717.16849HepG2EFTUD2
chr162357716323577251+intron-Distal4.639675.77028HepG2PCBP2
chr162358174123581787+intron-Proximal3.450194.29246HepG2SF3B4
chr162356961123569692+intron-Proximal4.3010914.37856HepG2PRPF8
chr162357389723573924+intron-Proximal5.435878.71620K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UBFD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UBFD1 is not available on ENCORE database.

  • 90 RBPs can affect the levels of UBFD1.  








The Knockdown/knockout RNA-Seq assay for UBFD1 is not available on ENCORE database.





90 RBPs can affect the gene expression of UBFD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
UBFD1ENSG00000103353.112681.856003827.09790-0.513003.767801.76770HepG2AARS
UBFD1ENSG00000103353.113564.448704055.44940-0.186202.620502.02580HepG2ACO1
UBFD1ENSG00000103353.115463.854407059.09450-0.369602.744502.21470HepG2AKAP1
UBFD1ENSG00000103353.112708.000204074.52630-0.5894017.0752015.39180HepG2AKAP8L
UBFD1ENSG00000103353.113280.024502701.729500.279702.340201.78410HepG2BOP1
UBFD1ENSG00000103353.112461.963402976.07470-0.273602.499201.32850HepG2BUD13
UBFD1ENSG00000103353.114585.795204054.596000.177502.810502.14090HepG2CKAP4
UBFD1ENSG00000103353.111935.834002480.32510-0.357603.192302.45910HepG2CPSF6
UBFD1ENSG00000103353.116373.464705394.601800.240504.904603.95920HepG2DAZAP1
UBFD1ENSG00000103353.112764.224003592.01170-0.377902.726701.44600HepG2DDX27
UBFD1ENSG00000103353.115162.419306761.94200-0.389403.455102.76550HepG2DDX3X
UBFD1ENSG00000103353.112463.755403839.19000-0.639907.237806.05580HepG2DDX55
UBFD1ENSG00000103353.114669.215205808.96940-0.315102.065101.52440HepG2DDX6
UBFD1ENSG00000103353.112589.262003537.26720-0.450108.652607.46510HepG2DNAJC21
UBFD1ENSG00000103353.113907.124305583.98430-0.515205.685804.85340HepG2EIF2S1
UBFD1ENSG00000103353.114295.696306170.80470-0.522604.909604.06180HepG2EIF4A3
UBFD1ENSG00000103353.112708.378706008.43890-1.1496016.3404014.76320HepG2EIF4B
UBFD1ENSG00000103353.115340.130703962.923500.430205.962304.73430HepG2EWSR1
UBFD1ENSG00000103353.111793.718602281.12330-0.346803.897402.48220HepG2FAM120A
UBFD1ENSG00000103353.112367.732404011.36290-0.760609.822708.49230HepG2FIP1L1
UBFD1ENSG00000103353.114689.769806226.55030-0.408903.895003.08350HepG2FXR1
UBFD1ENSG00000103353.112096.623402811.61470-0.423303.451402.74210HepG2GPKOW
UBFD1ENSG00000103353.112759.904803871.81020-0.4884012.1904010.36440HepG2HDGF
UBFD1ENSG00000103353.112809.783203972.19290-0.499506.797405.74760HepG2HNRNPC
UBFD1ENSG00000103353.112623.681203945.93520-0.5888018.0783016.63050HepG2HNRNPU
UBFD1ENSG00000103353.114171.718805870.87970-0.492905.383604.46960HepG2IGF2BP2
UBFD1ENSG00000103353.112727.686603609.78960-0.404202.794101.59690HepG2KHDRBS1
UBFD1ENSG00000103353.112967.195403707.20670-0.321207.415405.80090HepG2KIF1C
UBFD1ENSG00000103353.114717.166606228.72610-0.401003.590002.84210HepG2MAGOH
UBFD1ENSG00000103353.114935.906306263.51160-0.343702.514101.91010HepG2MATR3
UBFD1ENSG00000103353.112150.296702725.88400-0.342203.600202.21470HepG2NAA15
UBFD1ENSG00000103353.113354.868306410.99070-0.9343015.7590014.33110HepG2NCBP2
UBFD1ENSG00000103353.114211.981205349.26500-0.344805.197704.15690HepG2NOL12
UBFD1ENSG00000103353.113374.972705709.12160-0.7584010.969209.55900HepG2PABPC4
UBFD1ENSG00000103353.112815.406603905.86910-0.4723011.256209.74070HepG2PARN
UBFD1ENSG00000103353.114473.578205695.32420-0.348307.553806.62920HepG2PCBP1
UBFD1ENSG00000103353.111587.563102110.75030-0.410905.293103.60950HepG2PKM
UBFD1ENSG00000103353.112409.353003519.46850-0.5467011.8938010.42880HepG2PPIL4
UBFD1ENSG00000103353.112571.959304099.62180-0.672603.846601.75570HepG2PSIP1
UBFD1ENSG00000103353.113985.913005795.18370-0.5399015.8666014.76250HepG2PTBP1
UBFD1ENSG00000103353.114289.209205106.28440-0.251602.347301.79170HepG2PUF60
UBFD1ENSG00000103353.113581.844904130.74240-0.205703.123102.47730HepG2PUS1
UBFD1ENSG00000103353.114223.995706276.37320-0.5713013.5184012.28870HepG2QKI
UBFD1ENSG00000103353.111613.794503927.89970-1.2833013.5778012.12860HepG2RAVER1
UBFD1ENSG00000103353.113231.407104404.72060-0.446907.172805.88120HepG2RBM15
UBFD1ENSG00000103353.116439.269405426.970600.246603.489802.92650HepG2RBM22
UBFD1ENSG00000103353.112529.741403518.17130-0.475804.392003.05380HepG2RCC2
UBFD1ENSG00000103353.114087.082206449.50110-0.6581024.4075023.12020HepG2NELFE
UBFD1ENSG00000103353.114107.687006006.80110-0.5483017.6773016.33810HepG2RECQL
UBFD1ENSG00000103353.112015.289702483.55450-0.301402.795302.17740HepG2RPS19
UBFD1ENSG00000103353.112924.526704078.74420-0.479905.404403.88800HepG2RPS5
UBFD1ENSG00000103353.113912.303902929.222800.417403.267102.42180HepG2RRP9
UBFD1ENSG00000103353.112676.000803514.06220-0.393109.531008.44690HepG2SAFB2
UBFD1ENSG00000103353.111886.252202492.67530-0.402203.430602.37980HepG2SERBP1
UBFD1ENSG00000103353.113200.632902655.800700.269102.174001.54360HepG2SF3B1
UBFD1ENSG00000103353.114861.084606033.57310-0.311706.381605.54460HepG2SF3B4
UBFD1ENSG00000103353.112980.431804098.04500-0.4594016.0833014.72570HepG2SMN1
UBFD1ENSG00000103353.117027.818006129.573800.197203.346302.81160HepG2SRFBP1
UBFD1ENSG00000103353.114348.297506297.72820-0.5344018.7433017.74120HepG2SRSF1
UBFD1ENSG00000103353.114539.194405041.63160-0.151501.838701.31420HepG2SRSF5
UBFD1ENSG00000103353.114728.976303814.531200.309904.448003.59790HepG2SRSF7
UBFD1ENSG00000103353.113992.358505123.52370-0.359908.493107.62000HepG2SRSF9
UBFD1ENSG00000103353.114606.543905321.93910-0.208303.103102.56650HepG2SSB
UBFD1ENSG00000103353.112432.837803308.71500-0.443603.107201.93710HepG2STIP1
UBFD1ENSG00000103353.112666.010103670.65230-0.461402.805001.59400HepG2SUB1
UBFD1ENSG00000103353.112150.840802708.31680-0.332503.637002.56900HepG2SUPT6H
UBFD1ENSG00000103353.113135.498002615.339600.261601.996301.36830HepG2TARDBP
UBFD1ENSG00000103353.112852.714105201.36660-0.8666023.0617020.72230HepG2TIA1
UBFD1ENSG00000103353.113328.893303868.47510-0.216702.983802.40320HepG2TRIM56
UBFD1ENSG00000103353.111171.562602028.19000-0.791808.585506.06070HepG2TROVE2
UBFD1ENSG00000103353.114292.127405280.19150-0.298902.228301.48150HepG2UBE2L3
UBFD1ENSG00000103353.111369.369102257.53850-0.721209.567608.15870HepG2UCHL5
UBFD1ENSG00000103353.112776.836604013.35430-0.5314015.5296014.28320HepG2UTP3
UBFD1ENSG00000103353.112469.741503407.40060-0.464303.073301.91120HepG2XPO5
UBFD1ENSG00000103353.112958.718203762.08530-0.346603.049402.28930HepG2XRN2
UBFD1ENSG00000103353.115706.499304571.831600.319709.055508.21210HepG2ZNF622
UBFD1ENSG00000103353.113382.554702724.401300.312105.511204.75350K562AGGF1
UBFD1ENSG00000103353.111077.859301369.61450-0.345602.455901.63760K562BOP1
UBFD1ENSG00000103353.11805.320701456.23210-0.8546015.4381013.55100K562CPSF6
UBFD1ENSG00000103353.111861.271702313.37310-0.313704.089103.24080K562EIF2S2
UBFD1ENSG00000103353.112064.140601573.739200.391202.803301.75980K562EIF3D
UBFD1ENSG00000103353.111301.622201761.84810-0.436804.338703.31130K562EIF4A3
UBFD1ENSG00000103353.111107.589401586.69570-0.518606.935304.97650K562EIF4B
UBFD1ENSG00000103353.112449.113703082.80900-0.332003.476602.63200K562GRSF1
UBFD1ENSG00000103353.112548.275401984.876400.360402.884601.62400K562HNRNPK
UBFD1ENSG00000103353.112892.222603615.11220-0.321902.904801.74130K562MSI2
UBFD1ENSG00000103353.112405.712801456.515600.723802.429701.51550K562PABPN1
UBFD1ENSG00000103353.111972.741801621.779500.282502.722801.92910K562POLR2G
UBFD1ENSG00000103353.11952.726701301.72270-0.450303.891602.79140K562PSIP1
UBFD1ENSG00000103353.113127.189503856.55740-0.302404.212503.02150K562PUM2
UBFD1ENSG00000103353.113726.431202811.315400.406404.412603.74990K562PUS1
UBFD1ENSG00000103353.113213.324402739.290800.230202.545401.97350K562RBM15
UBFD1ENSG00000103353.112473.587801331.603000.893303.560002.14260K562SF1
UBFD1ENSG00000103353.112330.539002008.478400.214502.217701.48150K562SF3A3
UBFD1ENSG00000103353.112688.973601622.762700.728502.758401.46150K562SFPQ
UBFD1ENSG00000103353.112939.727501529.914200.942104.860003.08880K562SNRNP200
UBFD1ENSG00000103353.112534.420802057.730500.300505.301604.05600K562SRPK2
UBFD1ENSG00000103353.111635.285302013.22040-0.300002.192701.55840K562TARDBP
UBFD1ENSG00000103353.111872.123202247.32910-0.263503.493102.05860K562TROVE2
UBFD1ENSG00000103353.111158.967201465.69180-0.338702.347501.41850K562UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for UBFD1 is not available on ENCORE database.





16 RBPs can affect the splicing of UBFD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUBFD1ENSG00000103353.11chr16+2357830723578390235739452357405123581800235821780.067000.003600.05838includedK562SRSF1
SEUBFD1ENSG00000103353.11chr16+235783072357839023573945235740512358180023582178-0.137000.000000.00000excludedK562AKAP8L
SEUBFD1ENSG00000103353.11chr16+235783072357839023573945235740512358180023582178-0.067000.003860.03762excludedK562AQR
SEUBFD1ENSG00000103353.11chr16+2357535923575430235739452357405123578307235783900.112000.000000.00071includedHepG2UCHL5
SEUBFD1ENSG00000103353.11chr16+2357535923575430235739452357405123578307235783900.069000.000000.00001includedHepG2TIA1
SEUBFD1ENSG00000103353.11chr16+235735262357359223570788235709972357394523574051-0.097000.000480.00922excludedK562PUS1
SEUBFD1ENSG00000103353.11chr16+235783072357839023573945235740512358180023582178-0.125000.000000.00001excludedK562PUS1
SEUBFD1ENSG00000103353.11chr16+235783072357839023573945235740512358180023582178-0.175000.000000.00007excludedK562U2AF1
SEUBFD1ENSG00000103353.11chr16+235783072357839023573945235740512358180023582178-0.137000.000000.00002excludedK562UTP18
SEUBFD1ENSG00000103353.11chr16+235735262357359223570788235709972357394523574051-0.071000.007160.09545excludedK562U2AF2
SEUBFD1ENSG00000103353.11chr16+235783072357839023573945235740512358180023582178-0.190000.000000.00001excludedK562U2AF2
SEUBFD1ENSG00000103353.11chr16+235783072357839023573945235740512358180023582178-0.166000.000000.00000excludedK562RBM15
SEUBFD1ENSG00000103353.11chr16+235783072357839023573945235740512358180023582178-0.087000.000090.00413excludedK562AGGF1
SEUBFD1ENSG00000103353.11chr16+2357535923575430235739452357405123578307235783900.137000.000060.08894includedK562DDX55
SEUBFD1ENSG00000103353.11chr16+2357535923575430235739452357405123578307235783900.053000.000440.02029includedHepG2HNRNPC
SEUBFD1ENSG00000103353.11chr16+235783072357839023573945235740512358180023582178-0.078000.000010.00104excludedHepG2HNRNPC
SEUBFD1ENSG00000103353.11chr16+2357535923575430235739452357405123578307235783900.092000.000940.01840includedK562HNRNPC
MXEUBFD1ENSG00000103353.11chr16+23575359235754102357830723578390235739452357405123581800235818960.073000.001170.078771includedK562AARS
MXEUBFD1ENSG00000103353.11chr16+23575359235754102357830723578390235739452357405123581800235818960.072000.002460.095941includedK562PHF6
MXEUBFD1ENSG00000103353.11chr16+23570788235709972357352623573592235692702356960023573945235740510.135000.006000.098051includedK562SBDS

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for UBFD1 is not avaliable on ENCORE database.