TRIM71

General Information

Gene Name       : TRIM71
Gene ID             : ENSG00000206557.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRIM71)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRIM71ENSG00000206557.50.100.160.13ENCSR000AEF
HepG2TRIM71ENSG00000206557.532.4441.6937.06ENCSR985KAT
K562TRIM71ENSG00000206557.50.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRIM71 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRIM71 RNA is bound by 43 proteins.  







eCLIP assay for TRIM71 is not avaliable on ENCORE database.





43 proteins are bound to TRIM71 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr33293718932937239+3'-UTR3.403634.74492HepG2LIN28B
chr33293858132938635+3'-UTR4.073443.11282HepG2G3BP1
chr33293634432936391+3'-UTR3.331444.08943HepG2LIN28B
chr33293857932938634+3'-UTR5.4360310.56950HepG2TIAL1
chr33293531332935362+3'-UTR3.542519.15038HepG2LIN28B
chr33293858332938633+3'-UTR3.7993616.66063HepG2DDX55
chr33293712832937170+3'-UTR3.833225.19413HepG2LIN28B
chr33293542132935480+3'-UTR3.160293.52704HepG2IGF2BP1
chr33293915332939201+3'-UTR5.2483818.35572HepG2LIN28B
chr33293922132939253+3'-UTR3.821883.01092HepG2LIN28B
chr33293737732937442+3'-UTR3.640698.65119HepG2FAM120A
chr33293387132933940+3'-UTR3.493636.12154HepG2TIAL1
chr33293920132939221+3'-UTR4.8432112.34111HepG2LIN28B
chr33293870632938746+3'-UTR3.875369.69620HepG2DDX55
chr33293519832935242+3'-UTR3.390644.16779HepG2LIN28B
chr33293642332936502+3'-UTR3.323423.61508HepG2FUS
chr33293779632937845+3'-UTR3.629173.34998HepG2IGF2BP3
chr33293382632933892+3'-UTR3.177057.51942HepG2FUBP3
chr33293858732938628+3'-UTR4.9331315.77479HepG2DDX6
chr33293351832933552+3'-UTR4.259293.89472HepG2DDX52
chr33293182432931912+CDS,intron-Proximal4.2439211.22922HepG2AQR
chr33292755632927599+CDS,intron-Proximal3.406476.76873HepG2AQR
chr33292746132927560+CDS3.323067.33147HepG2G3BP1
chr33293304332933066+CDS3.680934.91022HepG2DDX6
chr33293292232932983+CDS4.6680320.80041HepG2RBM15
chr33293212232932188+CDS5.7511221.09891HepG2RBM15
chr33293273232932784+CDS3.215045.54854HepG2GRWD1
chr33293304532933073+CDS3.963498.08165HepG2RBM15
chr33292752632927603+CDS,intron-Proximal3.2236510.45192HepG2BUD13
chr33291545332915528+CDS,intron-Proximal3.1720110.84312HepG2BUD13
chr33286041632860461+CDS,intron-Proximal4.332273.59236HepG2AQR
chr33293234532932392+CDS3.707268.08165HepG2RBM15
chr33293252732932576+CDS3.353644.08943HepG2LIN28B
chr33285974632859839+CDS3.436277.38121HepG2EIF3H
chr33286035132860422+CDS4.1562815.97564HepG2RBM15
chr33292749832927585+CDS,intron-Proximal3.057933.22604HepG2SRSF1
chr33293246132932513+CDS3.076856.41537HepG2SLTM
chr33293306632933089+CDS4.175183.87858HepG2DDX6
chr33291547532915519+CDS,intron-Proximal4.5339331.20620HepG2PRPF8
chr33291546132915475+CDS3.6907617.05532HepG2PRPF8
chr33293303932933099+CDS3.106833.99175HepG2IGF2BP1
chr33292750032927568+CDS,intron-Proximal4.191709.27186HepG2PPIG
chr33292738732927472+CDS,intron-Proximal3.4147214.95179HepG2BUD13
chr33293288232932922+CDS4.4613412.19694HepG2RBM15
chr33285991732859950+CDS3.656289.52229HepG2RBM15
chr33293316232933233+CDS3.8126421.66077HepG2RBM15
chr33293228132932345+CDS3.930396.58465HepG2RBM15
chr33293201032932021+CDS4.102405.24699HepG2RBM15
chr33285972632859825+CDS3.6639513.37895HepG2RBM15
chr33293318732933265+CDS3.381843.81236HepG2SRSF1
chr33289664632896689+intron-Distal3.559133.64140HepG2SFPQ
chr33286164632861723+intron-Distal3.268337.91485HepG2FUS
chr33291456832914628+intron-Distal4.434555.08471HepG2HNRNPK
chr33290470732904772+intron-Distal3.503969.56923HepG2HNRNPC
chr33292354032923589+intron-Distal3.185055.36060HepG2SUGP2
chr33290128132901319+intron-Distal4.8561510.46790HepG2PCBP2
chr33291548232915586+intron-Distal,intron-Proximal5.626926.82887HepG2EFTUD2
chr33293075432930829+intron-Distal3.630464.48901HepG2HNRNPC
chr33289552232895624+intron-Distal5.5457321.16118HepG2ILF3
chr33291490232914937+intron-Distal3.934626.41317HepG2QKI
chr33290260432902651+intron-Distal3.909613.37208HepG2ILF3
chr33287873732878837+intron-Distal3.0732010.81522HepG2KHSRP
chr33291144332911507+intron-Distal3.685805.82160HepG2HNRNPK
chr33286346832863502+intron-Distal3.947693.55001HepG2STAU2
chr33287112132871194+intron-Distal4.542015.59872HepG2IGF2BP1
chr33286097132861080+intron-Distal5.0158541.22286HepG2HNRNPM
chr33288214232882210+intron-Distal3.216633.38007HepG2STAU2
chr33287706332877124+intron-Distal3.539024.57207HepG2KHSRP
chr33291397332914082+intron-Distal3.152265.88582HepG2PCBP2
chr33290160332901695+intron-Distal4.5758617.26273HepG2DDX59
chr33291114232911209+intron-Distal3.176797.26220HepG2PCBP2
chr33290142932901464+intron-Distal4.381024.77477HepG2RBFOX2
chr33286468732864759+intron-Distal3.388618.23187HepG2SFPQ
chr33288126032881360+intron-Distal3.938209.30308HepG2KHSRP
chr33290161232901696+intron-Distal7.0090586.32958HepG2PCBP2
chr33292058632920653+intron-Distal3.348777.22235HepG2SUGP2
chr33288478932884839+intron-Distal3.962703.80014HepG2FUS
chr33287384432873901+intron-Distal4.3018912.07113HepG2ILF3
chr33289677832896921+intron-Distal3.823364.94367HepG2PCBP2
chr33287865532878735+intron-Distal3.247797.35412HepG2KHSRP
chr33290816432908234+intron-Distal3.098604.17496HepG2HNRNPM
chr33287470032874748+intron-Distal3.184303.03634HepG2PABPN1
chr33288116132881232+intron-Distal3.983204.60998HepG2PCBP2
chr33288906832889113+intron-Distal4.376193.83958HepG2QKI
chr33288536032885415+intron-Distal4.119355.09344HepG2XPO5
chr33286054432860587+intron-Distal4.379565.69187HepG2TIA1
chr33292475732924834+intron-Distal3.586826.79980HepG2SUGP2
chr33289536632895430+intron-Distal3.558833.78150HepG2ILF3
chr33287915232879219+intron-Distal3.440314.98114HepG2ILF3
chr33289681532896919+intron-Distal5.4851211.91207HepG2GTF2F1
chr33290156432901683+intron-Distal6.3673024.39150HepG2HNRNPK
chr33291987932919926+intron-Distal4.172843.05187HepG2QKI
chr33290809032908142+intron-Distal4.159236.98528HepG2HNRNPM
chr33286112532861182+intron-Distal3.561734.61268HepG2FUS
chr33289680332896936+intron-Distal5.2352121.78118HepG2PRPF4
chr33286084132860858+intron-Distal4.827475.37406HepG2HNRNPM
chr33290154532901612+intron-Distal5.4381439.41729HepG2PCBP2
chr33286132832861376+intron-Distal5.119355.31214HepG2XPO5
chr33288811832888208+intron-Distal3.954316.34873HepG2HNRNPK
chr33288810232888231+intron-Distal4.5611618.35262HepG2PCBP2
chr33289509132895143+intron-Distal4.301124.31871HepG2HNRNPM
chr33286174732861818+intron-Distal3.413568.16130HepG2SFPQ
chr33286982932869919+intron-Distal4.123056.92280HepG2HNRNPM
chr33290125032901341+intron-Distal4.116656.24904HepG2PTBP1
chr33289684732896928+intron-Distal3.482485.02437HepG2XRN2
chr33286085832860884+intron-Distal4.3974515.25239HepG2HNRNPM
chr33291457532914615+intron-Distal5.7246311.47623HepG2PCBP2
chr33286088432860935+intron-Distal5.1846940.38796HepG2HNRNPM
chr33287113432871200+intron-Distal4.900064.03918HepG2SRSF7
chr33292069932920799+intron-Distal4.010009.00162HepG2SUGP2
chr33288453132884575+intron-Distal3.022353.73766HepG2SFPQ
chr33291992632920030+intron-Distal5.330009.03229HepG2QKI
chr33290159732901702+intron-Distal3.1675510.38831HepG2ILF3
chr33286375932863822+intron-Distal3.437787.63765HepG2HNRNPM
chr33286366632863723+intron-Distal3.8073014.96110HepG2HNRNPM
chr33288802432888104+intron-Distal3.152524.40834HepG2QKI
chr33288525232885360+intron-Distal3.158359.46102HepG2XPO5
chr33290161332901693+intron-Distal3.839787.32475HepG2PTBP1
chr33288127132881355+intron-Distal3.100547.00111HepG2PRPF4
chr33286361332863666+intron-Distal4.1056711.20151HepG2HNRNPM
chr33293060832930648+intron-Distal3.161363.00914HepG2PTBP1
chr33286093532860968+intron-Distal4.3535213.24316HepG2HNRNPM
chr33288797832888104+intron-Distal3.156138.07462HepG2SFPQ
chr33290125032901319+intron-Distal3.214503.69184HepG2SUGP2
chr33288170032881775+intron-Distal3.535617.33907HepG2HNRNPK
chr33289626832896334+intron-Distal3.239223.04623HepG2KHSRP
chr33287671332876775+intron-Distal3.419409.31545HepG2RBFOX2
chr33286085332860903+intron-Distal4.034533.47043HepG2KHSRP
chr33288810932888190+intron-Distal4.698484.30850HepG2QKI
chr33289515032895202+intron-Distal4.159233.62366HepG2HNRNPM
chr33292899232929090+intron-Distal3.311143.19404HepG2PTBP1
chr33286352532863613+intron-Distal4.9452724.83168HepG2HNRNPM
chr33286076132860818+intron-Distal3.307775.36929HepG2HNRNPM
chr33287034232870396+intron-Distal3.091033.03715HepG2POLR2G
chr33286328832863342+intron-Distal3.758764.23643HepG2XRN2
chr33293178132931824+intron-Proximal4.521533.59236HepG2AQR
chr33291524132915305+intron-Proximal3.967306.08339HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRIM71 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRIM71 is not available on ENCORE database.

  • 103 RBPs can affect the levels of TRIM71.  








The Knockdown/knockout RNA-Seq assay for TRIM71 is not available on ENCORE database.





103 RBPs can affect the gene expression of TRIM71 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRIM71ENSG00000206557.53267.638105320.24800-0.703209.434807.85270HepG2ABCF1
TRIM71ENSG00000206557.54228.186506392.90610-0.5964019.6022017.82990HepG2AKAP8L
TRIM71ENSG00000206557.53099.127705294.33630-0.772609.177707.42600HepG2BCCIP
TRIM71ENSG00000206557.52407.714804600.68760-0.9342014.4337012.62570HepG2BCLAF1
TRIM71ENSG00000206557.52928.235303725.16560-0.347303.476702.81470HepG2BOP1
TRIM71ENSG00000206557.53807.707404664.85910-0.292903.599302.73510HepG2CALR
TRIM71ENSG00000206557.54817.312106272.24950-0.380802.521301.59530HepG2CCAR1
TRIM71ENSG00000206557.57467.612706157.840900.278102.108001.42730HepG2CIRBP
TRIM71ENSG00000206557.54077.144806361.63090-0.6418031.1925029.50630HepG2CKAP4
TRIM71ENSG00000206557.51948.865403419.82560-0.8113014.1020012.69280HepG2CPSF6
TRIM71ENSG00000206557.52514.025603270.73740-0.379603.396802.21480HepG2CSTF2
TRIM71ENSG00000206557.56480.288107378.07630-0.187203.846602.99620HepG2DAZAP1
TRIM71ENSG00000206557.54698.253305884.86830-0.324907.777106.49880HepG2DDX19B
TRIM71ENSG00000206557.52116.716304947.18920-1.2248036.4834034.44500HepG2DDX21
TRIM71ENSG00000206557.53295.095004870.82890-0.563804.475402.89150HepG2DDX27
TRIM71ENSG00000206557.55071.366507503.56790-0.565206.704505.77240HepG2DDX3X
TRIM71ENSG00000206557.53252.869905205.26380-0.678307.357406.16620HepG2DDX55
TRIM71ENSG00000206557.53337.340604584.32860-0.458005.168703.82290HepG2DDX5
TRIM71ENSG00000206557.54237.880306087.66820-0.5225015.5851014.25460HepG2DKC1
TRIM71ENSG00000206557.53567.683104480.12240-0.328605.251704.31140HepG2DNAJC21
TRIM71ENSG00000206557.52582.162304440.32550-0.7821040.2139037.98970HepG2DNAJC2
TRIM71ENSG00000206557.52715.993204263.85380-0.650709.012107.46410HepG2EEF2
TRIM71ENSG00000206557.52789.852603554.68790-0.349502.962201.81710HepG2EFTUD2
TRIM71ENSG00000206557.53375.501204036.08840-0.257902.390501.30530HepG2EIF2S2
TRIM71ENSG00000206557.53560.624504671.15370-0.391605.409803.96510HepG2EIF3G
TRIM71ENSG00000206557.54993.930406667.61230-0.417002.739702.05310HepG2EIF4B
TRIM71ENSG00000206557.58686.5495010105.63310-0.218303.394502.73830HepG2ETF1
TRIM71ENSG00000206557.54909.247006217.79990-0.340904.023403.01690HepG2EWSR1
TRIM71ENSG00000206557.54309.812205372.23470-0.317902.195901.50630HepG2FIP1L1
TRIM71ENSG00000206557.54068.734006409.30760-0.655608.046806.94410HepG2G3BP1
TRIM71ENSG00000206557.51964.511403081.93160-0.649708.828107.27130HepG2GEMIN5
TRIM71ENSG00000206557.53448.397905616.80880-0.703806.046804.51970HepG2GNB2L1
TRIM71ENSG00000206557.53239.138704523.04060-0.481706.711805.77110HepG2HNRNPA1
TRIM71ENSG00000206557.55735.628606780.34790-0.241404.032602.93740HepG2HNRNPA2B1
TRIM71ENSG00000206557.53684.241605030.96810-0.449505.852304.87190HepG2HNRNPC
TRIM71ENSG00000206557.55611.732806721.06130-0.260206.782205.77070HepG2HNRNPL
TRIM71ENSG00000206557.52996.400103706.78060-0.306903.146102.13630HepG2HNRNPM
TRIM71ENSG00000206557.53314.366204997.71220-0.5925019.5430018.04470HepG2HNRNPU
TRIM71ENSG00000206557.53841.119005105.01090-0.4104013.7955012.29330HepG2ILF2
TRIM71ENSG00000206557.53790.104005094.32850-0.426703.103301.82520HepG2KHDRBS1
TRIM71ENSG00000206557.54765.164205816.58750-0.287607.079505.50080HepG2KIF1C
TRIM71ENSG00000206557.53480.784604740.30880-0.445603.026001.71960HepG2KRR1
TRIM71ENSG00000206557.54190.544506621.44330-0.660006.682905.37920HepG2LARP4
TRIM71ENSG00000206557.54383.053905778.37190-0.398702.463301.32410HepG2LIN28B
TRIM71ENSG00000206557.55193.062406950.79420-0.420603.575102.86560HepG2MATR3
TRIM71ENSG00000206557.53208.978604348.20440-0.438305.875504.73810HepG2MSI2
TRIM71ENSG00000206557.54598.600907114.36840-0.629507.746806.71330HepG2NCBP2
TRIM71ENSG00000206557.55026.296306335.09280-0.333902.650301.94270HepG2PABPC4
TRIM71ENSG00000206557.53145.615404946.97740-0.6532021.8537019.92530HepG2PARN
TRIM71ENSG00000206557.54720.228406182.46400-0.389306.364505.50300HepG2PCBP1
TRIM71ENSG00000206557.53685.043706039.55140-0.712806.102804.60520HepG2PCBP2
TRIM71ENSG00000206557.52350.060502862.45820-0.284603.042601.75070HepG2PKM
TRIM71ENSG00000206557.53215.993104457.57360-0.471009.602108.27320HepG2PPIL4
TRIM71ENSG00000206557.51935.703604016.35820-1.0530019.5253017.66600HepG2PRPF8
TRIM71ENSG00000206557.55462.438606291.26080-0.203802.032001.55050HepG2PTBP1
TRIM71ENSG00000206557.55053.658506983.62860-0.466607.114306.21430HepG2PUF60
TRIM71ENSG00000206557.53809.055207413.21720-0.9607076.1898073.98990HepG2PUM1
TRIM71ENSG00000206557.55119.697206481.12760-0.340208.500607.52180HepG2PUS1
TRIM71ENSG00000206557.57888.346406812.796900.211402.582401.97500HepG2QKI
TRIM71ENSG00000206557.53245.015405828.92270-0.845006.594205.53090HepG2RAVER1
TRIM71ENSG00000206557.56524.223808446.43230-0.372507.684606.92080HepG2RBM22
TRIM71ENSG00000206557.57350.671106183.351100.249402.634301.97360HepG2RBM25
TRIM71ENSG00000206557.54982.008806633.69700-0.413102.436901.51260HepG2RBM27
TRIM71ENSG00000206557.56122.179507001.25980-0.193601.866801.40330HepG2NELFE
TRIM71ENSG00000206557.53989.170605724.65500-0.521103.442802.38890HepG2RPS10
TRIM71ENSG00000206557.52014.825303368.00950-0.7412014.8501013.58030HepG2RPS19
TRIM71ENSG00000206557.53836.114806118.42720-0.673506.115304.94970HepG2RPS2
TRIM71ENSG00000206557.53595.046705368.62460-0.578504.802103.74850HepG2RPS3A
TRIM71ENSG00000206557.54482.966006245.15480-0.478303.574802.34730HepG2RPS5
TRIM71ENSG00000206557.52506.994503973.09970-0.664307.195605.99810HepG2RRP9
TRIM71ENSG00000206557.53493.131204450.72980-0.349508.402707.36960HepG2SAFB2
TRIM71ENSG00000206557.52477.474903380.42070-0.448304.432803.25440HepG2SERBP1
TRIM71ENSG00000206557.54289.818906316.86200-0.558304.777603.87690HepG2SF3A3
TRIM71ENSG00000206557.52578.504403661.50990-0.505906.414405.37700HepG2SF3B1
TRIM71ENSG00000206557.55245.633306549.34660-0.320204.314803.60040HepG2SF3B4
TRIM71ENSG00000206557.53483.414705686.02430-0.706903.110401.41280HepG2SLTM
TRIM71ENSG00000206557.53905.200505190.38090-0.4104014.4145013.12550HepG2SMN1
TRIM71ENSG00000206557.54403.446505939.99090-0.431802.887101.90780HepG2SMNDC1
TRIM71ENSG00000206557.52698.525704074.11680-0.594303.408402.53620HepG2SNRNP70
TRIM71ENSG00000206557.57433.396909539.92210-0.3600010.312209.51140HepG2SRFBP1
TRIM71ENSG00000206557.55612.373006895.06080-0.297006.133205.25330HepG2SRSF5
TRIM71ENSG00000206557.55549.368108282.88960-0.5778021.9134020.77110HepG2SSB
TRIM71ENSG00000206557.52581.028003588.54230-0.475503.355601.99980HepG2STAU1
TRIM71ENSG00000206557.53348.519104669.87650-0.479903.600502.33010HepG2STIP1
TRIM71ENSG00000206557.55916.848307841.80210-0.4064014.0909012.86740HepG2SUCLG1
TRIM71ENSG00000206557.52900.642803627.82090-0.322703.382002.34830HepG2SUPT6H
TRIM71ENSG00000206557.53061.521805182.02600-0.759309.590208.45830HepG2SUPV3L1
TRIM71ENSG00000206557.57973.025006145.554700.375507.381806.54140HepG2TAF15
TRIM71ENSG00000206557.51964.608103606.30730-0.8763017.0192015.48320HepG2TARDBP
TRIM71ENSG00000206557.52030.238604856.50490-1.2583050.7264049.08260HepG2TIAL1
TRIM71ENSG00000206557.52640.292704899.60320-0.8920040.8141038.97180HepG2TRIM56
TRIM71ENSG00000206557.55836.924606822.36170-0.225102.270501.48450HepG2TUFM
TRIM71ENSG00000206557.56121.239804595.750800.413404.586003.78700HepG2U2AF1
TRIM71ENSG00000206557.55896.485307221.13380-0.292402.228301.48150HepG2UBE2L3
TRIM71ENSG00000206557.52204.908903061.36410-0.473504.361203.40660HepG2UCHL5
TRIM71ENSG00000206557.53648.094705602.10190-0.6188022.3734020.76330HepG2UPF1
TRIM71ENSG00000206557.53256.008704745.85050-0.543603.511002.37080HepG2UPF2
TRIM71ENSG00000206557.54582.160606409.67530-0.484203.344402.17560HepG2XRCC6
TRIM71ENSG00000206557.53061.242705101.12830-0.7367010.346108.96310HepG2XRN2
TRIM71ENSG00000206557.52522.588804222.64450-0.7432034.4180032.56470HepG2ZC3H8
TRIM71ENSG00000206557.53226.528706161.22400-0.9332040.0551038.60790HepG2ZNF622
TRIM71ENSG00000206557.551.762803.037204.091009.485208.50270K562AQR
TRIM71ENSG00000206557.50.000007.34050-99999.999992.036401.33760K562MTPAP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRIM71 is not available on ENCORE database.






No RBPs affect the alternative splcing events of TRIM71 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TRIM71 is not avaliable on ENCORE database.