TMEM41A

General Information

Gene Name       : TMEM41A
Gene ID             : ENSG00000163900.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM41A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM41AENSG00000163900.1015.5514.7315.14ENCSR000AEF
HepG2TMEM41AENSG00000163900.1019.4724.1221.80ENCSR985KAT
K562TMEM41AENSG00000163900.1026.1926.8426.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM41A is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM41A RNA is bound by 12 proteins.  







eCLIP assay for TMEM41A is not avaliable on ENCORE database.





12 proteins are bound to TMEM41A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3185207976185208063-3'-UTR,intron-Distal3.231665.39758K562KHSRP
chr3185209497185209532-3'-UTR,CDS,intron-Distal4.250385.50254K562IGF2BP2
chr3185207923185208048-3'-UTR,intron-Distal4.080149.37691K562UPF1
chr3185209298185209455-3'-UTR,CDS,intron-Distal4.891667.58173K562IGF2BP1
chr3185207969185208061-3'-UTR,intron-Distal4.147013.75546HepG2KHSRP
chr3185208667185208757-3'-UTR,intron-Distal,intron-Proximal4.913925.41597HepG2UPF1
chr3185209474185209497-3'-UTR,CDS,intron-Distal5.031094.77733K562IGF2BP2
chr3185208711185208756-3'-UTR,intron-Distal,intron-Proximal3.727656.89681K562PABPC4
chr3185208124185208204-3'-UTR,intron-Distal3.418584.30677K562YBX3
chr3185207874185208015-3'-UTR,intron-Distal,intron-Proximal3.167763.50315HepG2UPF1
chr3185208651185208750-3'-UTR,intron-Distal,intron-Proximal3.721254.90523HepG2AKAP1
chr3185208001185208047-3'-UTR,intron-Distal3.023883.08258K562TIA1
chr3185209496185209566-3'-UTR,CDS,intron-Distal3.069825.19836HepG2U2AF2
chr3185209474185209547-3'-UTR,CDS,intron-Distal4.4390011.66098K562IGF2BP1
chr3185208619185208757-3'-UTR,intron-Distal,intron-Proximal3.692749.58774K562UPF1
chr3185207429185207523-3'-UTR,intron-Distal4.190137.12652K562UPF1
chr3185209043185209125-3'-UTR,intron-Distal3.475053.05408HepG2UPF1
chr3185216688185216805-5'-UTR,CDS,intron-Distal,intron-Proximal5.3279534.12150HepG2DDX3X
chr3185216710185216799-5'-UTR,CDS,intron-Distal,intron-Proximal4.478448.45138K562DDX3X
chr3185212990185213104-CDS,intron-Distal,intron-Proximal3.917318.96385K562DDX3X
chr3185214723185214802-CDS,intron-Distal,intron-Proximal4.955115.69951K562AQR
chr3185212338185212426-CDS,intron-Distal,intron-Proximal4.414887.87148HepG2PRPF8
chr3185214721185214770-CDS,intron-Distal,intron-Proximal4.5089521.64325HepG2DDX3X
chr3185212940185212990-CDS,intron-Distal,intron-Proximal4.842945.21083K562DDX3X
chr3185216630185216688-CDS,intron-Distal4.9420715.25090HepG2DDX3X
chr3185212396185212421-CDS,intron-Distal,intron-Proximal3.630006.35344K562PRPF8
chr3185214570185214629-CDS,intron-Distal,intron-Proximal3.530823.88924K562PRPF8
chr3185216574185216637-CDS,intron-Distal,intron-Proximal3.940996.23016HepG2PRPF8
chr3185214579185214656-CDS,intron-Distal,intron-Proximal4.358137.26133HepG2PRPF8
chr3185200803185200870-intron-Distal4.070523.49011K562KHSRP
chr3185214518185214570-intron-Distal,intron-Proximal4.405174.22101K562PRPF8
chr3185212302185212396-intron-Distal,intron-Proximal4.652459.27995K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM41A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM41A is not available on ENCORE database.

  • 88 RBPs can affect the levels of TMEM41A.  








The Knockdown/knockout RNA-Seq assay for TMEM41A is not available on ENCORE database.





88 RBPs can affect the gene expression of TMEM41A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM41AENSG00000163900.61738.27470686.659201.3399023.8117021.62550HepG2ABCF1
TMEM41AENSG00000163900.6861.34740674.896600.351803.424302.58210HepG2AKAP8L
TMEM41AENSG00000163900.6501.59120969.89560-0.9513011.388209.87840HepG2ASCC1
TMEM41AENSG00000163900.61395.732001066.436800.388105.218004.32480HepG2AUH
TMEM41AENSG00000163900.61074.01610810.800700.405502.079801.55590HepG2BOP1
TMEM41AENSG00000163900.61605.16080921.464500.8006010.493009.07490HepG2CIRBP
TMEM41AENSG00000163900.6947.93150556.507800.768304.981703.95010HepG2CNOT7
TMEM41AENSG00000163900.6694.35680457.961500.600404.941103.55950HepG2CSTF2
TMEM41AENSG00000163900.6800.13690621.271800.364904.062503.07550HepG2DDX19B
TMEM41AENSG00000163900.6916.96510581.060500.658107.654906.14790HepG2DDX24
TMEM41AENSG00000163900.61256.38030682.077300.881208.591606.47810HepG2DDX27
TMEM41AENSG00000163900.61425.002001122.886500.343702.232201.66470HepG2DDX3X
TMEM41AENSG00000163900.6913.98330663.229500.462603.179102.10280HepG2DDX5
TMEM41AENSG00000163900.6453.78420607.92980-0.421903.498302.71430HepG2DNAJC21
TMEM41AENSG00000163900.6971.61400512.307600.9233010.842309.17530HepG2EEF2
TMEM41AENSG00000163900.62101.613501024.774201.0361014.8253013.36760HepG2EIF4A3
TMEM41AENSG00000163900.6437.21440997.71800-1.1903012.3338010.93520HepG2EIF4B
TMEM41AENSG00000163900.6709.75190915.25460-0.366903.785902.83380HepG2EIF4G1
TMEM41AENSG00000163900.6804.17980594.744500.435102.884901.77000HepG2ESF1
TMEM41AENSG00000163900.6857.01260656.408500.384603.050302.17510HepG2EWSR1
TMEM41AENSG00000163900.6847.31780606.769100.481702.927701.62320HepG2FKBP4
TMEM41AENSG00000163900.6813.689901033.88530-0.345502.125101.51490HepG2FXR1
TMEM41AENSG00000163900.61299.888101018.177700.352302.433101.59960HepG2G3BP2
TMEM41AENSG00000163900.6557.72080370.277400.590804.382903.24630HepG2GEMIN5
TMEM41AENSG00000163900.6885.70320618.203200.518604.236602.97390HepG2GNB2L1
TMEM41AENSG00000163900.61268.76080843.896500.588205.175904.31780HepG2GPKOW
TMEM41AENSG00000163900.6832.34360573.843800.536403.781901.57160HepG2GRWD1
TMEM41AENSG00000163900.61300.02070613.753601.0827019.4284017.97040HepG2HNRNPA1
TMEM41AENSG00000163900.6861.34970682.676900.335302.134801.51670HepG2HNRNPC
TMEM41AENSG00000163900.6771.70850971.10770-0.331602.089101.47620HepG2HNRNPK
TMEM41AENSG00000163900.61017.00560805.339100.336602.156301.59410HepG2HNRNPLL
TMEM41AENSG00000163900.6951.81320757.817800.328702.603701.90150HepG2IGF2BP1
TMEM41AENSG00000163900.6692.97010974.93380-0.492503.610702.84890HepG2IGF2BP2
TMEM41AENSG00000163900.61108.92040665.786600.735902.882801.60780HepG2KRR1
TMEM41AENSG00000163900.61483.92740819.493300.856508.611407.13680HepG2LARP4
TMEM41AENSG00000163900.6450.77220605.58850-0.425902.652101.54170HepG2LARP7
TMEM41AENSG00000163900.62511.820701034.245901.2801025.4144023.56090HepG2MAGOH
TMEM41AENSG00000163900.61658.374301040.045700.673006.560805.62130HepG2MATR3
TMEM41AENSG00000163900.61067.63770561.031500.9282013.8301012.17000HepG2MSI2
TMEM41AENSG00000163900.61450.219601064.553700.445903.356802.66110HepG2NCBP2
TMEM41AENSG00000163900.6555.07990919.91900-0.7288010.478309.02790HepG2NOL12
TMEM41AENSG00000163900.6432.38170604.87020-0.484304.426603.51390HepG2PPIL4
TMEM41AENSG00000163900.6526.64830673.27090-0.354302.923502.13110HepG2PRPF4
TMEM41AENSG00000163900.6295.54170562.32400-0.928008.333707.01580HepG2PRPF8
TMEM41AENSG00000163900.61794.88930878.146001.0313021.4806020.03100HepG2PUF60
TMEM41AENSG00000163900.61542.93830684.229601.1730042.2632040.42640HepG2PUS1
TMEM41AENSG00000163900.6619.431301037.33340-0.743908.570207.56330HepG2QKI
TMEM41AENSG00000163900.6399.88390644.30510-0.688203.355902.58200HepG2RAVER1
TMEM41AENSG00000163900.6674.509601023.36100-0.601407.978507.20460HepG2RBM22
TMEM41AENSG00000163900.61083.49550592.977400.869509.488807.55770HepG2RCC2
TMEM41AENSG00000163900.6896.751601065.87260-0.249301.798001.34170HepG2NELFE
TMEM41AENSG00000163900.61677.05480829.030701.0163018.6076017.14890HepG2RPLP0
TMEM41AENSG00000163900.61070.33980632.812800.758105.427504.12990HepG2RPS10
TMEM41AENSG00000163900.6933.95790404.670801.2065021.2124019.76090HepG2RPS19
TMEM41AENSG00000163900.61065.02900673.486100.661106.970705.73770HepG2RPS2
TMEM41AENSG00000163900.6404.28140556.25140-0.460402.447901.70400HepG2RRP9
TMEM41AENSG00000163900.6668.19050406.135100.718206.506105.08090HepG2SERBP1
TMEM41AENSG00000163900.61535.50470906.463400.760306.837505.74460HepG2SF3A3
TMEM41AENSG00000163900.6396.75740656.67900-0.726905.107603.77740HepG2SMNDC1
TMEM41AENSG00000163900.6827.522201155.86090-0.482106.946606.25270HepG2SRFBP1
TMEM41AENSG00000163900.61863.336501040.808000.8401023.2894022.20860HepG2SRSF1
TMEM41AENSG00000163900.6948.78560756.089000.327403.130502.39650HepG2SRSF7
TMEM41AENSG00000163900.6603.66460846.71580-0.488105.371704.64700HepG2SRSF9
TMEM41AENSG00000163900.64001.291701003.582501.99520165.93780163.69060HepG2SSB
TMEM41AENSG00000163900.6317.88810463.00230-0.542502.901301.63820HepG2STAU1
TMEM41AENSG00000163900.61200.43350784.755000.613106.682805.62260HepG2TARDBP
TMEM41AENSG00000163900.6680.61430859.63130-0.336902.681501.85710HepG2TIA1
TMEM41AENSG00000163900.61273.87880659.002600.9508011.9241011.01400HepG2TIAL1
TMEM41AENSG00000163900.6382.78610664.85140-0.7965012.0693011.01270HepG2TRIM56
TMEM41AENSG00000163900.61229.34030593.041701.0516014.9696013.46400HepG2U2AF1
TMEM41AENSG00000163900.61078.68290803.892900.424105.741204.79310HepG2UPF1
TMEM41AENSG00000163900.61007.91930664.483800.601003.731302.55100HepG2UPF2
TMEM41AENSG00000163900.61033.18060776.129400.412604.941504.18050HepG2UTP3
TMEM41AENSG00000163900.6998.39280714.362900.482903.441602.63740HepG2XRN2
TMEM41AENSG00000163900.61213.32260664.410900.8687022.4613020.88000HepG2ZC3H8
TMEM41AENSG00000163900.61179.21070884.130500.415403.705003.09720HepG2ZNF622
TMEM41AENSG00000163900.62329.300001726.542700.431904.181403.48890K562AQR
TMEM41AENSG00000163900.6931.298101151.27200-0.305902.440801.70050K562CPSF6
TMEM41AENSG00000163900.61120.725701346.89010-0.265202.475801.78860K562EIF2S2
TMEM41AENSG00000163900.6585.64760762.30510-0.380303.407802.10260K562EIF4B
TMEM41AENSG00000163900.61129.68470880.325200.359703.760503.07150K562FXR1
TMEM41AENSG00000163900.6744.298401099.17440-0.562505.909204.75170K562GPKOW
TMEM41AENSG00000163900.61074.262201330.21580-0.308302.975002.04890K562HNRNPU
TMEM41AENSG00000163900.6791.837601055.78520-0.415002.531901.56520K562IGF2BP2
TMEM41AENSG00000163900.6897.613201107.73860-0.303502.346901.50350K562MATR3
TMEM41AENSG00000163900.6812.240101072.91980-0.401603.384002.41140K562METAP2
TMEM41AENSG00000163900.61065.667101230.59630-0.207602.155501.48860K562NSUN2
TMEM41AENSG00000163900.6945.208401197.52730-0.341402.123501.39370K562PCBP3
TMEM41AENSG00000163900.6736.62170918.54950-0.318402.303501.57280K562POLR2G
TMEM41AENSG00000163900.61624.474901129.783500.523805.606004.86530K562PUS1
TMEM41AENSG00000163900.61060.07470818.433500.373103.010301.88150K562SAFB
TMEM41AENSG00000163900.61026.144501243.98880-0.277703.149702.15690K562SRPK2
TMEM41AENSG00000163900.6863.551101057.10100-0.291802.124301.49540K562SRSF1
TMEM41AENSG00000163900.6589.93650876.79110-0.571704.225502.94580K562SUPV3L1
TMEM41AENSG00000163900.61334.45730921.321900.534402.737601.92300K562SYNCRIP
TMEM41AENSG00000163900.6575.68460806.60880-0.486603.913002.74800K562TRIM56
TMEM41AENSG00000163900.6853.190301494.72310-0.808909.686407.58700K562UTP3
TMEM41AENSG00000163900.61493.407801945.01380-0.381203.692102.66830K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM41A is not available on ENCORE database.





12 RBPs can affect the splicing of TMEM41A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMEM41AENSG00000163900.6chr3-185212941185213103185212410185212549185214615185214769-0.202000.000680.01527excludedK562SF3B4
SETMEM41AENSG00000163900.6chr3-185212941185213103185212410185212549185214615185214769-0.176000.000000.00001excludedHepG2U2AF1
SETMEM41AENSG00000163900.6chr3-185212941185213103185212410185212549185214615185214769-0.083000.000000.00038excludedK562FMR1
SETMEM41AENSG00000163900.6chr3-185212410185212549185207388185209545185214615185214769-0.169000.000000.00011excludedK562PUS1
SETMEM41AENSG00000163900.6chr3-185212410185212549185207388185209545185214615185214769-0.144000.000350.00964excludedK562U2AF1
SETMEM41AENSG00000163900.6chr3-185212410185212549185207388185209545185214615185214769-0.234000.000000.00000excludedK562HNRNPU
SETMEM41AENSG00000163900.6chr3-185212941185213103185212410185212549185214615185214769-0.057000.000440.04937excludedK562CPSF6
SETMEM41AENSG00000163900.6chr3-185212941185213103185212410185212549185214615185214769-0.192000.000000.00000excludedK562SF3B1
SETMEM41AENSG00000163900.6chr3-185212410185212549185207388185209545185214615185214769-0.124000.000400.02106excludedHepG2HNRNPU
SETMEM41AENSG00000163900.6chr3-185212941185213103185212410185212549185214615185214769-0.197000.000640.02828excludedK562PTBP1
A3SSTMEM41AENSG00000163900.6chr3-1852129411852131691852129411852131031852146151852147690.088000.010390.05463longerK562AQR
MXETMEM41AENSG00000163900.6chr3-185212410185212549185212941185213103185207388185209545185214615185214769-0.131000.018510.087632includedHepG2U2AF2
MXETMEM41AENSG00000163900.6chr3-185212410185212549185212941185213103185207388185209545185214615185214769-0.096000.000370.037432includedHepG2DDX59
MXETMEM41AENSG00000163900.6chr3-1852124101852125491852129411852131031852073881852095451852146151852147690.112000.002470.052431includedHepG2HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMEM41A is not avaliable on ENCORE database.