TMEM143

General Information

Gene Name : TMEM143
Gene ID : ENSG00000161558.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TMEM143)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TMEM143	ENSG00000161558.10	2.08	4.73	3.41	ENCSR000AEF
HepG2	TMEM143	ENSG00000161558.10	10.99	5.32	8.16	ENCSR985KAT
K562	TMEM143	ENSG00000161558.10	3.37	3.36	3.37	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TMEM143 is not avaliable on ENCORE database.

Proteins bound to RNA

TMEM143 RNA is bound by 8 proteins.

CanvasJS.com

eCLIP assay for TMEM143 is not avaliable on ENCORE database.

8 proteins are bound to TMEM143 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	48845272	48845378	-	intron-Distal	6.96044	31.50981	HepG2	PCBP2
chr19	48845253	48845397	-	intron-Distal	5.92409	10.17440	HepG2	DDX59
chr19	48865263	48865370	-	intron-Distal	5.18886	8.32644	HepG2	HNRNPL
chr19	48846470	48846526	-	intron-Distal,intron-Proximal	3.59616	6.55814	HepG2	PRPF8
chr19	48845094	48845173	-	intron-Distal	3.82333	6.14186	K562	ILF3
chr19	48845264	48845385	-	intron-Distal	4.49229	5.31936	HepG2	HNRNPK
chr19	48845173	48845253	-	intron-Distal	3.52709	5.22214	K562	ILF3
chr19	48836539	48836587	-	CDS,intron-Distal	4.65193	4.73643	HepG2	DDX59
chr19	48845071	48845189	-	intron-Distal	4.22246	4.70168	K562	CSTF2T
chr19	48845263	48845324	-	intron-Distal	3.48279	4.34776	K562	ILF3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 15 entries

eCLIP assay for TMEM143 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TMEM143 is not available on ENCORE database.
78 RBPs can affect the levels of TMEM143.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TMEM143 is not available on ENCORE database.

78 RBPs can affect the gene expression of TMEM143 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TMEM143	ENSG00000161558.6	107.47730	336.47950	-1.64650	21.52440	19.87150	K562	DDX47
TMEM143	ENSG00000161558.6	86.80420	263.03520	-1.59940	14.80900	13.80370	HepG2	RBM22
TMEM143	ENSG00000161558.6	96.97770	303.03490	-1.64380	15.03650	13.52390	HepG2	U2AF1
TMEM143	ENSG00000161558.6	516.33440	257.91410	1.00130	13.92980	12.95670	HepG2	SSB
TMEM143	ENSG00000161558.6	180.25610	454.56890	-1.33450	13.72430	11.89760	K562	PUF60
TMEM143	ENSG00000161558.6	128.96950	297.07740	-1.20380	11.92690	11.08070	HepG2	SRFBP1
TMEM143	ENSG00000161558.6	92.47940	262.31510	-1.50410	12.15630	11.02200	HepG2	BOP1
TMEM143	ENSG00000161558.6	79.22630	210.59140	-1.41040	10.78040	9.67130	K562	FXR1
TMEM143	ENSG00000161558.6	104.60000	240.08690	-1.19870	10.51510	9.48920	HepG2	ACO1
TMEM143	ENSG00000161558.6	117.90010	286.69080	-1.28190	10.49080	9.02080	HepG2	MSI2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 89 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TMEM143 is not available on ENCORE database.

6 RBPs can affect the splicing of TMEM143 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TMEM143	ENSG00000161558.6	chr19	-	48863328	48863433			48848525	48848611	48866547	48866788	0.40300	0.00026	0.02776	included	HepG2	QKI
MXE	TMEM143	ENSG00000161558.6	chr19	-	48848416	48848611	48863328	48863433	48846577	48846708	48866547	48866788	-0.48100	0.00043	0.01922	2included	HepG2	RBFOX2
SE	TMEM143	ENSG00000161558.6	chr19	-	48863328	48863433			48848525	48848611	48866547	48866788	0.36300	0.00061	0.09279	included	K562	GPKOW
SE	TMEM143	ENSG00000161558.6	chr19	-	48863328	48863433			48848525	48848611	48866547	48866788	-0.33200	0.00071	0.05155	excluded	HepG2	HNRNPL
MXE	TMEM143	ENSG00000161558.6	chr19	-	48848416	48848611	48863328	48863433	48846577	48846708	48866547	48866788	0.41700	0.00136	0.09782	1included	HepG2	FUBP3
MXE	TMEM143	ENSG00000161558.6	chr19	-	48848416	48848611	48866547	48866788	48846577	48846708	48867154	48867195	0.56200	0.00148	0.05662	1included	HepG2	BCCIP

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TMEM143

General Information

Functions

Localization

Domains (AlphaFold: TMEM143)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TMEM143 is not avaliable on ENCORE database.

8 proteins are bound to TMEM143 RNA:

eCLIP assay for TMEM143 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TMEM143 is not available on ENCORE database.

78 RBPs can affect the gene expression of TMEM143 :

The Knockdown/knockout RNA-Seq assay for TMEM143 is not available on ENCORE database.

6 RBPs can affect the splicing of TMEM143 :

The Knockdown/knockout RNA-Seq assay for TMEM143 is not avaliable on ENCORE database.