SPATC1L

General Information

Gene Name       : SPATC1L
Gene ID             : ENSG00000160284.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SPATC1L)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SPATC1LENSG00000160284.140.241.460.85ENCSR000AEF
HepG2SPATC1LENSG00000160284.1410.061.235.65ENCSR985KAT
K562SPATC1LENSG00000160284.1461.2925.7843.53ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SPATC1L is not avaliable on ENCORE database.



Proteins bound to RNA
  • SPATC1L RNA is bound by 12 proteins.  







eCLIP assay for SPATC1L is not avaliable on ENCORE database.





12 proteins are bound to SPATC1L RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr214758829947588345-3'-UTR,CDS,intron-Distal3.615793.34231K562RBM15
chr214758108747581171-3'-UTR,intron-Distal3.674108.92499K562ILF3
chr214758128747581410-3'-UTR,CDS,intron-Distal3.412967.84829K562METAP2
chr214758110147581207-3'-UTR,intron-Distal3.295716.06790K562PABPC4
chr214758120747581260-3'-UTR,intron-Distal3.536143.12548K562PABPC4
chr214758109147581163-3'-UTR,intron-Distal3.865883.06644K562GTF2F1
chr214758840447588493-3'-UTR,CDS,intron-Distal3.390997.83335K562RPS3
chr214758834547588470-3'-UTR,CDS,intron-Distal4.893206.97460K562PCBP1
chr214758129247581350-3'-UTR,CDS,intron-Distal3.9733115.00751K562YBX3
chr214758110747581256-3'-UTR,intron-Distal4.825126.94957HepG2CSTF2T
chr214760427347604308-5'-UTR,intron-Distal4.1483614.59237K562YBX3
chr214760427847604328-5'-UTR,intron-Distal5.083468.10698K562RPS3
chr214760430847604334-5'-UTR,intron-Distal4.0100112.11727K562YBX3
chr214758822147588232-CDS,intron-Distal,intron-Proximal4.2586915.88525K562YBX3
chr214758193747581960-CDS,intron-Distal3.4830819.64049K562YBX3
chr214758141747581507-CDS,intron-Distal3.8545014.57262K562YBX3
chr214758138547581396-CDS,intron-Distal5.2799310.97360K562YBX3
chr214758184647581908-CDS,intron-Distal4.7058413.47097K562YBX3
chr214758135047581385-CDS,intron-Distal4.8479716.47345K562YBX3
chr214758196047581982-CDS,intron-Distal,intron-Proximal3.7227618.78278K562YBX3
chr214759486747594936-intron-Distal3.581214.61337K562EXOSC5
chr214759662747596695-intron-Distal4.177543.01456K562EXOSC5
chr214759537847595416-intron-Distal4.279187.91454K562EXOSC5
chr214759638247596456-intron-Distal3.960466.41110K562EXOSC5
chr214759511547595156-intron-Distal4.068453.59909K562EXOSC5
chr214759608347596122-intron-Distal4.214543.01445K562EXOSC5
chr214759420247594251-intron-Distal3.470024.31711K562EXOSC5
chr214759541647595457-intron-Distal4.611314.48623K562EXOSC5
chr214760242947602494-intron-Distal,intron-Proximal3.561203.93915K562EWSR1
chr214760066947600724-intron-Distal3.397663.12654K562SLTM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SPATC1L is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SPATC1L is not available on ENCORE database.

  • 87 RBPs can affect the levels of SPATC1L.  








The Knockdown/knockout RNA-Seq assay for SPATC1L is not available on ENCORE database.





87 RBPs can affect the gene expression of SPATC1L :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SPATC1LENSG00000160284.1080.39570125.17230-0.638702.293201.67920HepG2CKAP4
SPATC1LENSG00000160284.10161.0696051.167501.654306.661105.52250HepG2DDX55
SPATC1LENSG00000160284.10208.86360133.187300.649002.049001.51060HepG2DDX6
SPATC1LENSG00000160284.10106.3328060.528300.812802.276601.67250HepG2DNAJC2
SPATC1LENSG00000160284.10135.7521075.436400.847503.206402.33280HepG2EIF4G2
SPATC1LENSG00000160284.10101.90210181.15440-0.830004.373803.64820HepG2ETF1
SPATC1LENSG00000160284.1096.74160147.32480-0.606802.014601.33510HepG2FUBP3
SPATC1LENSG00000160284.10253.25650138.388100.871804.499503.69640HepG2GPKOW
SPATC1LENSG00000160284.10158.1871072.705001.121406.509505.51840HepG2HNRNPL
SPATC1LENSG00000160284.10145.0422047.031001.624705.439903.87770HepG2NONO
SPATC1LENSG00000160284.1096.83450148.18380-0.613801.883401.35310HepG2QKI
SPATC1LENSG00000160284.10105.17810151.40770-0.525601.800601.35920HepG2RBM22
SPATC1LENSG00000160284.10119.0980060.645400.973604.074303.31840HepG2SAFB2
SPATC1LENSG00000160284.10131.7991072.449100.863203.734302.93940HepG2SLBP
SPATC1LENSG00000160284.1057.24130148.70500-1.377306.956506.28940HepG2SRSF1
SPATC1LENSG00000160284.10133.2360084.840000.651102.374301.79000HepG2SUCLG1
SPATC1LENSG00000160284.10153.4627066.769701.200507.108606.27750HepG2TRIM56
SPATC1LENSG00000160284.10176.9664078.136201.179304.939703.79780HepG2UBE2L3
SPATC1LENSG00000160284.1098.9946050.127800.981602.019401.39160HepG2XRN2
SPATC1LENSG00000160284.101094.430901589.05210-0.538005.617803.87150K562ABCF1
SPATC1LENSG00000160284.103316.201301707.404100.9576028.4750026.74790K562AGGF1
SPATC1LENSG00000160284.102957.092201876.344300.656207.669205.80760K562AKAP8
SPATC1LENSG00000160284.104038.495101776.672101.184505.140904.23830K562AKAP8L
SPATC1LENSG00000160284.10579.575501522.33500-1.393205.248304.48460K562AQR
SPATC1LENSG00000160284.103174.301101864.233500.767809.551607.72490K562ATP5C1
SPATC1LENSG00000160284.10920.76580669.916300.458805.284703.94030K562BCLAF1
SPATC1LENSG00000160284.101014.118101520.59020-0.584407.986006.63630K562CPSF6
SPATC1LENSG00000160284.10792.39150508.231500.640607.115505.30510K562CSTF2
SPATC1LENSG00000160284.101528.640202464.82400-0.689202.618901.67110K562CELF1
SPATC1LENSG00000160284.10836.14790587.306100.509502.897201.54320K562DDX27
SPATC1LENSG00000160284.101782.059302264.93330-0.345902.343901.73650K562DDX47
SPATC1LENSG00000160284.101812.918201382.973700.390404.639202.80340K562DDX6
SPATC1LENSG00000160284.102866.116201911.571400.584203.938302.86950K562DKC1
SPATC1LENSG00000160284.10489.67860320.908000.609605.091504.02570K562EIF3G
SPATC1LENSG00000160284.101499.39530929.742900.689405.649202.94180K562EIF3H
SPATC1LENSG00000160284.10800.281801425.10340-0.8325012.8333011.01690K562EIF4A3
SPATC1LENSG00000160284.10881.897301214.71370-0.461902.995501.30630K562ESF1
SPATC1LENSG00000160284.101225.044301547.20560-0.336802.338101.55030K562FMR1
SPATC1LENSG00000160284.10832.867301311.41420-0.655006.324504.88420K562FTO
SPATC1LENSG00000160284.10508.130301482.04770-1.5443054.3622051.90010K562FXR1
SPATC1LENSG00000160284.10131.43300375.76890-1.515507.282106.01970K562G3BP2
SPATC1LENSG00000160284.101125.409901451.77240-0.367403.148202.30300K562GPKOW
SPATC1LENSG00000160284.102416.814601397.713700.789902.626301.44910K562HNRNPA2B1
SPATC1LENSG00000160284.10415.662801007.95430-1.2779024.2114022.51910K562HNRNPC
SPATC1LENSG00000160284.10680.71380939.65150-0.465103.137002.14100K562HNRNPM
SPATC1LENSG00000160284.101125.184801548.72170-0.460904.294103.30880K562HSPD1
SPATC1LENSG00000160284.101412.51040583.354101.275702.533201.56620K562IGF2BP2
SPATC1LENSG00000160284.102850.833001885.350600.596507.095505.62710K562KIF1C
SPATC1LENSG00000160284.10808.968101239.67720-0.615804.615603.37310K562KRR1
SPATC1LENSG00000160284.101518.833701022.802500.570303.977202.15430K562LIN28B
SPATC1LENSG00000160284.101556.36640899.326300.7912012.912909.60180K562LSM11
SPATC1LENSG00000160284.102907.606101804.860000.687802.915301.80470K562MAK16
SPATC1LENSG00000160284.103390.496102112.088800.6827013.9303011.65150K562MBNL1
SPATC1LENSG00000160284.10879.710501417.09900-0.687809.454307.76660K562METAP2
SPATC1LENSG00000160284.101281.248601873.64540-0.5483011.7769010.23710K562MTPAP
SPATC1LENSG00000160284.101882.385201480.433800.346402.071301.33070K562NAA15
SPATC1LENSG00000160284.10895.28490558.615000.680402.888601.56020K562NONO
SPATC1LENSG00000160284.101761.675302081.76030-0.240902.896902.13590K562NSUN2
SPATC1LENSG00000160284.101543.11180992.794200.636204.298602.33360K562NUSAP1
SPATC1LENSG00000160284.103098.748301221.948801.342405.451803.93310K562PABPN1
SPATC1LENSG00000160284.10970.93100599.066500.696604.884603.04020K562PCBP1
SPATC1LENSG00000160284.10401.28350545.02580-0.441702.538601.60270K562PCBP2
SPATC1LENSG00000160284.10863.375801944.29280-1.1712013.5089011.69400K562PCBP3
SPATC1LENSG00000160284.10652.335401491.29320-1.1929029.3797027.04150K562POLR2G
SPATC1LENSG00000160284.103010.205001452.117701.051603.219501.60000K562PPP1R8
SPATC1LENSG00000160284.10348.24740551.15400-0.662302.319201.63050K562PRPF8
SPATC1LENSG00000160284.101741.08340903.803100.945806.649905.14550K562PSIP1
SPATC1LENSG00000160284.10885.482302185.76700-1.303605.453804.31010K562PUF60
SPATC1LENSG00000160284.101431.496102326.20210-0.700502.681501.63320K562PUM1
SPATC1LENSG00000160284.103009.722701761.680500.772602.752102.21010K562PUS1
SPATC1LENSG00000160284.103708.028401716.733101.1109035.6152033.40090K562RBM15
SPATC1LENSG00000160284.101308.66330824.923100.665709.241607.41100K562RCC2
SPATC1LENSG00000160284.10470.75970316.051800.574704.684002.62290K562RPS10
SPATC1LENSG00000160284.102136.126401117.126100.935104.215502.64530K562SF1
SPATC1LENSG00000160284.101085.022502054.20780-0.9209026.8034024.56380K562SF3A3
SPATC1LENSG00000160284.10694.946301380.74910-0.9905012.8517010.67850K562SF3B1
SPATC1LENSG00000160284.101529.35910781.971900.967608.683606.57550K562SRFBP1
SPATC1LENSG00000160284.10947.70840550.580700.783404.058802.03360K562SRP68
SPATC1LENSG00000160284.101612.648102104.58400-0.384107.445705.98760K562SRPK2
SPATC1LENSG00000160284.101630.746101296.908900.330402.889301.80770K562SRSF4
SPATC1LENSG00000160284.101075.07580551.287300.9635014.4014011.84660K562SRSF5
SPATC1LENSG00000160284.101092.340301498.76960-0.456404.119402.42700K562SSRP1
SPATC1LENSG00000160284.101088.059001495.86910-0.459202.999902.13990K562SYNCRIP
SPATC1LENSG00000160284.10910.65440590.536700.624806.039504.96530K562TARDBP
SPATC1LENSG00000160284.101209.22970569.666901.085809.986408.31440K562TIA1
SPATC1LENSG00000160284.101143.31340559.261301.031503.855502.53300K562TRA2A
SPATC1LENSG00000160284.101883.00580923.842401.0272016.6511013.91370K562TRIM56
SPATC1LENSG00000160284.10221.28580375.94570-0.764604.478303.46140K562U2AF2
SPATC1LENSG00000160284.101425.116702207.33680-0.6312016.7342015.13680K562UPF1
SPATC1LENSG00000160284.101343.409602724.61780-1.0202016.2539013.73060K562UTP3
SPATC1LENSG00000160284.101233.665601964.10030-0.6709018.9030016.98190K562WDR43
SPATC1LENSG00000160284.10869.84010575.176800.596603.922802.38400K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SPATC1L is not available on ENCORE database.






No RBPs affect the alternative splcing events of SPATC1L on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SPATC1L is not avaliable on ENCORE database.