SH3TC1

General Information

Gene Name       : SH3TC1
Gene ID             : ENSG00000125089.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SH3TC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SH3TC1ENSG00000125089.161.645.043.34ENCSR000AEF
HepG2SH3TC1ENSG00000125089.1610.974.327.65ENCSR985KAT
K562SH3TC1ENSG00000125089.160.630.310.47ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SH3TC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SH3TC1 RNA is bound by 27 proteins.  







eCLIP assay for SH3TC1 is not avaliable on ENCORE database.





27 proteins are bound to SH3TC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr482076218207721+3'-UTR,intron-Distal3.720366.51348HepG2CSTF2T
chr482336498233713+3'-UTR,CDS,intron-Proximal4.344196.49229HepG2SF3B4
chr482246938224744+3'-UTR,CDS,intron-Proximal3.440996.04280HepG2PRPF8
chr482209728221085+3'-UTR,5'-UTR,CDS,intron-Proximal3.374194.34573HepG2SF3B4
chr482114828211538+3'-UTR,5'-UTR,CDS,intron-Distal4.430964.08604HepG2PPIG
chr482246928224741+3'-UTR,CDS,intron-Proximal3.587754.70265HepG2AQR
chr482074578207536+3'-UTR,intron-Distal3.585615.12571HepG2CSTF2T
chr482351968235239+3'-UTR,CDS4.334643.49905HepG2PPIG
chr482372808237292+3'-UTR,CDS,intron-Proximal5.218906.26248HepG2PRPF8
chr482068258206926+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.772785.32906HepG2AQR
chr482290138229067+3'-UTR,CDS4.456013.80461HepG2RBM15
chr482068488206942+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.305047.53508HepG2BUD13
chr482426988242768+3'-UTR,intron-Distal,intron-Proximal3.853713.16434HepG2LARP4
chr482200068220072+3'-UTR,5'-UTR,CDS3.236684.24993HepG2PPIG
chr482372748237349+3'-UTR,CDS,intron-Proximal5.463797.81134HepG2AQR
chr482336908233740+3'-UTR,CDS,intron-Proximal3.862894.35314HepG2U2AF2
chr482068388206904+3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.977568.49281HepG2SF3B4
chr482199358220041+3'-UTR,5'-UTR,CDS,intron-Proximal4.301576.58230HepG2AQR
chr482379798238036+3'-UTR,CDS,intron-Distal,intron-Proximal4.107707.08947HepG2PRPF8
chr482211108221189+5'-UTR,CDS,intron-Proximal4.127124.68902HepG2PPIG
chr482113928211448+5'-UTR,CDS,intron-Distal,intron-Proximal4.221203.98315HepG2SF3B4
chr482145338214641+5'-UTR,CDS,intron-Proximal4.317459.08333HepG2PRPF8
chr482177858217844+5'-UTR,CDS,intron-Proximal3.787898.92003HepG2SF3B4
chr482144648214558+5'-UTR,CDS,intron-Proximal4.163959.27186HepG2PPIG
chr482143968214494+5'-UTR,CDS,intron-Proximal3.630289.83627HepG2BUD13
chr482069718207085+5'-UTR,CDS,intron-Distal3.656577.36645HepG2PPIG
chr482131558213228+intron-Distal5.1339910.06682HepG2DDX59
chr482198608219928+intron-Distal,intron-Proximal3.308097.69474HepG2RBFOX2
chr482131388213190+intron-Distal6.4457019.23199HepG2PCBP2
chr482081868208274+intron-Distal3.694375.36249HepG2CSTF2T
chr482133908213459+intron-Distal3.418186.79749HepG2CSTF2T
chr482132378213320+intron-Distal5.5638418.16319HepG2DDX59
chr482131418213194+intron-Distal3.634687.68837HepG2CSTF2T
chr482331948233281+intron-Distal4.3096610.29681HepG2HNRNPM
chr482127988213013+intron-Distal6.2512121.84076HepG2HNRNPK
chr482183588218423+intron-Distal3.355473.02792HepG2RBFOX2
chr482355748235729+intron-Distal5.3172813.77998HepG2AGGF1
chr482117118211776+intron-Distal3.034563.12257HepG2CSTF2T
chr482312738231388+intron-Distal4.153354.27893HepG2DROSHA
chr482128488212883+intron-Distal4.008516.17312HepG2PCBP2
chr482357898235879+intron-Distal3.983355.82272HepG2HNRNPL
chr482356968235789+intron-Distal3.970166.08725HepG2HNRNPL
chr482140698214148+intron-Distal3.462408.07946HepG2CSTF2T
chr482330008233081+intron-Distal4.138014.28420HepG2HNRNPM
chr482257228225821+intron-Distal4.3921315.72469HepG2HNRNPL
chr482360618236151+intron-Distal4.565116.36202HepG2AGGF1
chr482080058208081+intron-Distal3.913673.68836HepG2FKBP4
chr482311938231329+intron-Distal3.328304.24460HepG2IGF2BP1
chr482306278230743+intron-Distal5.3504919.10182HepG2RBFOX2
chr482312298231333+intron-Distal6.2719017.90425HepG2PRPF4
chr482333338233451+intron-Distal4.8810610.12287HepG2HNRNPM
chr482130148213084+intron-Distal4.743245.59072HepG2HNRNPK
chr482313338231389+intron-Distal3.866365.55742HepG2PRPF4
chr482083198208378+intron-Distal4.482215.93727HepG2CSTF2T
chr482359948236058+intron-Distal3.684735.82272HepG2HNRNPL
chr482120148212107+intron-Distal3.797607.20706HepG2CSTF2T
chr482180648218159+intron-Distal,intron-Proximal5.1547613.02329HepG2RBFOX2
chr482339238233987+intron-Distal,intron-Proximal3.908213.15816HepG2PRPF4
chr482359008236061+intron-Distal5.4240013.53830HepG2AGGF1
chr482093478209430+intron-Distal3.934973.27714HepG2HNRNPL
chr482312158231371+intron-Distal5.4053416.68919HepG2FAM120A
chr482138428213885+intron-Distal4.741906.08348HepG2CSTF2T
chr482256698225722+intron-Distal4.335559.01740HepG2HNRNPL
chr482314038231551+intron-Distal3.354103.13597HepG2CSTF2T
chr482358118235953+intron-Distal3.820543.71159HepG2YBX3
chr482258798225983+intron-Distal4.058939.20850HepG2HNRNPL
chr482129128212957+intron-Distal5.824409.83537HepG2PCBP2
chr482363988236512+intron-Distal3.831393.71159HepG2YBX3
chr482118958212007+intron-Distal3.098055.94558HepG2CSTF2T
chr482359178235989+intron-Distal3.267974.88448HepG2HNRNPL
chr482330818233152+intron-Distal3.138013.04714HepG2HNRNPM
chr482363178236388+intron-Distal4.752749.37564HepG2XPO5
chr482131948213233+intron-Distal3.374404.88713HepG2CSTF2T
chr482130298213063+intron-Distal5.441717.89532HepG2PCBP2
chr482408708240968+intron-Distal4.774007.31716HepG2HNRNPL
chr482118078211847+intron-Distal4.129083.40229HepG2CSTF2T
chr482131908213318+intron-Distal6.9111125.21459HepG2PCBP2
chr482312668231366+intron-Distal3.921984.60046HepG2CSTF2T
chr482357388235862+intron-Distal5.8602810.61445HepG2AGGF1
chr482080368208082+intron-Distal3.660415.06257HepG2SLTM
chr482145988214677+intron-Distal,intron-Proximal5.984807.41664HepG2EFTUD2
chr482136708213729+intron-Distal4.830885.60609HepG2CSTF2T
chr482312508231364+intron-Distal4.633955.03029HepG2NKRF
chr482197538219817+intron-Distal3.797603.16310HepG2CSTF2T
chr482038748203921+intron-Distal4.201273.87340HepG2CSTF2T
chr482334518233499+intron-Distal4.127163.62366HepG2HNRNPM
chr482131368213250+intron-Distal4.6851612.47733HepG2HNRNPK
chr482014008201466+intron-Distal4.180363.16310HepG2CSTF2T
chr482418408241886+intron-Distal4.641543.85055HepG2XPO5
chr482080188208115+intron-Distal5.8690812.62224HepG2CSTF2T
chr482038138203865+intron-Distal4.474413.63902HepG2CSTF2T
chr482312568231369+intron-Distal4.890267.28703HepG2GTF2F1
chr482355198235574+intron-Distal4.067804.97582HepG2AGGF1
chr482372928237369+intron-Proximal4.240927.77750HepG2PRPF8
chr482179928218050+intron-Proximal4.045675.55843HepG2RBFOX2
chr482161148216183+intron-Proximal4.052263.56713HepG2SF3B4
chr482391378239194+intron-Proximal4.697024.24670HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SH3TC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SH3TC1 is not available on ENCORE database.

  • 90 RBPs can affect the levels of SH3TC1.  








The Knockdown/knockout RNA-Seq assay for SH3TC1 is not available on ENCORE database.





90 RBPs can affect the gene expression of SH3TC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SH3TC1ENSG00000125089.12183.06530442.40600-1.273009.175807.61940HepG2ABCF1
SH3TC1ENSG00000125089.121163.07210742.050400.648303.732702.95690HepG2AUH
SH3TC1ENSG00000125089.12312.66110203.306300.620802.510701.65460HepG2BCLAF1
SH3TC1ENSG00000125089.12451.42620551.85560-0.289802.096701.50610HepG2CKAP4
SH3TC1ENSG00000125089.12721.33360364.167900.9860011.578509.50200HepG2CPSF7
SH3TC1ENSG00000125089.1281.77910144.50680-0.821302.456501.44110HepG2CSTF2
SH3TC1ENSG00000125089.12478.64260277.789000.784908.944907.91340HepG2CELF1
SH3TC1ENSG00000125089.12427.79050298.630300.518404.781503.84740HepG2DAZAP1
SH3TC1ENSG00000125089.12350.85840510.51710-0.541105.776204.63040HepG2DDX19B
SH3TC1ENSG00000125089.12137.71500233.91190-0.764303.307702.57050HepG2DDX21
SH3TC1ENSG00000125089.12100.04730229.22900-1.196105.197603.93830HepG2DDX24
SH3TC1ENSG00000125089.121031.38950678.893200.603202.928602.28720HepG2DDX3X
SH3TC1ENSG00000125089.12487.19680230.088001.082207.920806.69150HepG2DDX55
SH3TC1ENSG00000125089.121477.99580583.548501.340607.136306.18410HepG2DDX6
SH3TC1ENSG00000125089.12249.88990528.11920-1.0796015.2649013.94270HepG2DKC1
SH3TC1ENSG00000125089.12448.29370154.917901.5328016.2483014.68140HepG2DNAJC21
SH3TC1ENSG00000125089.12334.38490153.605201.1222013.4267012.09930HepG2DNAJC2
SH3TC1ENSG00000125089.12142.31230300.94730-1.080503.194802.20930HepG2EEF2
SH3TC1ENSG00000125089.12117.91380221.11090-0.907003.806002.56450HepG2EIF3G
SH3TC1ENSG00000125089.12317.40130619.37220-0.964502.303601.71780HepG2EIF4A3
SH3TC1ENSG00000125089.12426.01000282.265400.593704.133103.14750HepG2EIF4G2
SH3TC1ENSG00000125089.12229.30080383.13120-0.740605.426603.94300HepG2ESF1
SH3TC1ENSG00000125089.121584.45300852.069500.8948021.1775019.77840HepG2ETF1
SH3TC1ENSG00000125089.12429.94440559.86390-0.380902.409501.67530HepG2FUBP3
SH3TC1ENSG00000125089.12856.89650526.992700.7012011.497109.70560HepG2HDGF
SH3TC1ENSG00000125089.12623.35360334.706700.897104.543202.75160HepG2HNRNPA0
SH3TC1ENSG00000125089.1278.13000156.40270-1.001302.896902.23630HepG2HNRNPA1
SH3TC1ENSG00000125089.12365.40710274.479300.412702.644601.72960HepG2HNRNPA2B1
SH3TC1ENSG00000125089.12545.51280326.787600.739202.928301.48460HepG2HNRNPAB
SH3TC1ENSG00000125089.12379.86790252.280200.590404.126503.26910HepG2HNRNPF
SH3TC1ENSG00000125089.12457.16520272.010800.749008.749507.61670HepG2HNRNPL
SH3TC1ENSG00000125089.12790.17690377.094201.067208.144005.99320HepG2KHDRBS1
SH3TC1ENSG00000125089.12701.89070504.586600.476005.673604.22800HepG2KIF1C
SH3TC1ENSG00000125089.12386.13660625.67190-0.696301.881101.33550HepG2MAGOH
SH3TC1ENSG00000125089.12529.79300361.372500.551803.635302.70910HepG2MSI2
SH3TC1ENSG00000125089.12529.98600296.124500.839706.615705.44110HepG2NOL12
SH3TC1ENSG00000125089.12185.0691095.666300.951902.918401.42910HepG2NOLC1
SH3TC1ENSG00000125089.12364.00620211.346600.784302.974701.83830HepG2NONO
SH3TC1ENSG00000125089.121128.56360361.355001.6429016.9044014.67620HepG2PABPC1
SH3TC1ENSG00000125089.12900.14400573.055400.651403.240202.46110HepG2PABPC4
SH3TC1ENSG00000125089.12398.28580154.152501.3693015.2751013.61360HepG2PPIL4
SH3TC1ENSG00000125089.1294.47090199.08890-1.075502.546501.37390HepG2PRPF6
SH3TC1ENSG00000125089.12445.43800282.693700.655905.260804.47140HepG2PUF60
SH3TC1ENSG00000125089.12770.51240300.111601.3602036.9563035.29350HepG2PUM1
SH3TC1ENSG00000125089.12642.69000299.880101.0996015.7769014.25880HepG2PUM2
SH3TC1ENSG00000125089.12353.70030562.25810-0.668708.104207.14320HepG2PUS1
SH3TC1ENSG00000125089.12831.44280616.097200.432402.822602.19260HepG2QKI
SH3TC1ENSG00000125089.12711.32950506.146000.490904.343203.29870HepG2RBM15
SH3TC1ENSG00000125089.12348.87250712.15240-1.029509.443208.61530HepG2RBM22
SH3TC1ENSG00000125089.12853.44850559.168400.609902.465701.82510HepG2RBM25
SH3TC1ENSG00000125089.12691.21880381.842400.856104.721702.73320HepG2RBM47
SH3TC1ENSG00000125089.12267.44850633.12930-1.2432020.5445019.33510HepG2NELFE
SH3TC1ENSG00000125089.12397.55940589.71240-0.568804.223403.48320HepG2RECQL
SH3TC1ENSG00000125089.12200.96120271.84070-0.435802.044301.44640HepG2RPLP0
SH3TC1ENSG00000125089.12135.39190237.71790-0.812102.475601.89060HepG2RPS19
SH3TC1ENSG00000125089.12366.95510153.907101.2534011.7498010.56420HepG2SAFB2
SH3TC1ENSG00000125089.12708.17660374.150800.920404.761803.04600HepG2SART3
SH3TC1ENSG00000125089.12397.98630172.991701.201906.181105.16150HepG2SF3B1
SH3TC1ENSG00000125089.12729.79460592.270700.301102.345901.79550HepG2SF3B4
SH3TC1ENSG00000125089.12504.22780271.099900.8952012.6706011.35630HepG2SLBP
SH3TC1ENSG00000125089.12265.75100179.463500.566302.165001.58470HepG2SMN1
SH3TC1ENSG00000125089.12367.91820186.836200.977504.427903.19770HepG2SMNDC1
SH3TC1ENSG00000125089.12143.06400618.22110-2.1115046.9726045.54270HepG2SRSF1
SH3TC1ENSG00000125089.12609.97910279.142601.1277019.9984018.52380HepG2SRSF5
SH3TC1ENSG00000125089.12378.14350247.873900.609204.400603.55490HepG2SRSF7
SH3TC1ENSG00000125089.12275.05090698.27320-1.3441013.8535012.88170HepG2SSB
SH3TC1ENSG00000125089.12468.79070298.222700.652502.635801.42440HepG2STAU1
SH3TC1ENSG00000125089.12816.10900345.826501.2386012.5564010.10380HepG2STIP1
SH3TC1ENSG00000125089.12336.71970170.751600.979503.664802.27130HepG2SUB1
SH3TC1ENSG00000125089.12661.85930317.441701.0599020.2273018.79300HepG2SUCLG1
SH3TC1ENSG00000125089.12270.69390555.73310-1.0377013.5687012.46440HepG2TAF15
SH3TC1ENSG00000125089.12293.11020153.497500.933104.148902.95950HepG2TFIP11
SH3TC1ENSG00000125089.12615.31350169.448001.8604015.5037014.31930HepG2TRIM56
SH3TC1ENSG00000125089.12507.39800382.029300.409302.023101.47690HepG2U2AF1
SH3TC1ENSG00000125089.12874.29020292.387501.580103.862402.86700HepG2UBE2L3
SH3TC1ENSG00000125089.12235.36000135.280300.798804.069303.14860HepG2UCHL5
SH3TC1ENSG00000125089.12694.85260406.327700.774007.990006.90630HepG2UPF1
SH3TC1ENSG00000125089.12211.89190392.28860-0.888604.538803.80290HepG2UTP3
SH3TC1ENSG00000125089.12750.56300355.929101.076305.602804.04310HepG2XPO5
SH3TC1ENSG00000125089.12196.54310265.53910-0.434102.179601.57310HepG2ZC3H8
SH3TC1ENSG00000125089.12790.16670446.878200.8222011.0233010.11060HepG2ZNF622
SH3TC1ENSG00000125089.1293.048009.276303.3263015.7279014.22280K562EIF2S2
SH3TC1ENSG00000125089.121.4048011.08220-2.979801.929001.40590K562FXR1
SH3TC1ENSG00000125089.1225.799605.730402.170502.748301.95630K562GPKOW
SH3TC1ENSG00000125089.12132.609509.001203.8808022.3952020.32360K562HSPD1
SH3TC1ENSG00000125089.1235.7183076.37660-1.096502.389801.63170K562KIF1C
SH3TC1ENSG00000125089.1234.7226085.56170-1.301104.329003.14290K562MBNL1
SH3TC1ENSG00000125089.1223.2545059.97290-1.366802.652801.79210K562NAA15
SH3TC1ENSG00000125089.121.4190014.06400-3.309002.588801.78660K562PCBP3
SH3TC1ENSG00000125089.1211.3775071.36810-2.649107.573506.72110K562PUS1
SH3TC1ENSG00000125089.1226.8029069.54500-1.375603.631702.96550K562RBM15
SH3TC1ENSG00000125089.1263.0387026.288901.261702.559201.32790K562SFPQ
SH3TC1ENSG00000125089.1225.797405.297202.283803.178302.29330K562TIA1
SH3TC1ENSG00000125089.1250.6786023.491101.109202.328901.54860K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SH3TC1 is not available on ENCORE database.





3 RBPs can affect the splicing of SH3TC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESH3TC1ENSG00000125089.12chr4+8234433823479282337028233883823508982352400.119000.002040.04773includedHepG2HNRNPK
A3SSSH3TC1ENSG00000125089.12chr4+8234134823524082350898235240823370282338830.284000.000010.00152longerHepG2HNRNPK
A3SSSH3TC1ENSG00000125089.12chr4+821139182115498211474821154982068938207093-0.451000.000900.06364shorterHepG2SF3B4
RISH3TC1ENSG00000125089.12chr4+823715982393978237159823728282380048239397-0.150000.009590.07669excludedHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SH3TC1 is not avaliable on ENCORE database.