SEC16A

General Information

Gene Name       : SEC16A
Gene ID             : ENSG00000148396.18
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SEC16A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SEC16AENSG00000148396.1816.7324.4720.60ENCSR000AEF
HepG2SEC16AENSG00000148396.1827.9826.2227.10ENCSR985KAT
K562SEC16AENSG00000148396.1834.4230.0332.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SEC16A is not avaliable on ENCORE database.



Proteins bound to RNA
  • SEC16A RNA is bound by 35 proteins.  







eCLIP assay for SEC16A is not avaliable on ENCORE database.





35 proteins are bound to SEC16A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9139334819139334972-3'-UTR,intron-Distal3.9993912.14680K562PABPC4
chr9139341350139341484-3'-UTR,CDS,intron-Distal,intron-Proximal4.5971810.03577HepG2AQR
chr9139341776139341834-3'-UTR,CDS,intron-Distal,intron-Proximal3.274133.46866HepG2U2AF2
chr9139335750139335839-3'-UTR,intron-Distal4.429157.49447K562UPF1
chr9139342131139342213-3'-UTR,CDS,intron-Distal,intron-Proximal4.817526.80569HepG2SF3B4
chr9139335121139335166-3'-UTR,intron-Distal3.310633.37083K562UPF1
chr9139341342139341398-3'-UTR,CDS,intron-Distal4.484285.91377HepG2FXR2
chr9139342493139342497-3'-UTR,intron-Distal,intron-Proximal5.865989.63974K562AQR
chr9139342019139342099-3'-UTR,CDS,intron-Distal,intron-Proximal3.4047118.97515K562DDX24
chr9139335715139335790-3'-UTR,intron-Distal3.026763.97552K562YBX3
chr9139341270139341307-3'-UTR,intron-Distal,intron-Proximal6.5044015.90046K562AQR
chr9139342188139342272-3'-UTR,intron-Distal,intron-Proximal4.681097.16913K562LIN28B
chr9139341636139341683-3'-UTR,CDS,intron-Distal,intron-Proximal3.8377710.01959HepG2PRPF8
chr9139335726139335779-3'-UTR,intron-Distal3.337923.07411K562LIN28B
chr9139341375139341428-3'-UTR,CDS,intron-Distal,intron-Proximal3.766337.58883K562AQR
chr9139335381139335457-3'-UTR,intron-Distal3.824773.47885K562LIN28B
chr9139342303139342361-3'-UTR,CDS,intron-Distal,intron-Proximal3.7323412.47035K562DDX24
chr9139341641139341659-3'-UTR,intron-Distal,intron-Proximal5.424416.83960K562AQR
chr9139342248139342343-3'-UTR,CDS,intron-Distal,intron-Proximal3.082406.11915K562AQR
chr9139334602139334715-3'-UTR,intron-Distal3.7468711.77804K562IGF2BP2
chr9139335212139335266-3'-UTR,intron-Distal4.510184.90799K562UPF1
chr9139342303139342327-3'-UTR,CDS,intron-Distal,intron-Proximal3.372823.28366HepG2BCLAF1
chr9139341305139341338-3'-UTR,CDS,intron-Distal,intron-Proximal3.285803.01727K562DDX24
chr9139342304139342360-3'-UTR,CDS,intron-Distal,intron-Proximal4.292065.88204HepG2FXR2
chr9139341659139341678-3'-UTR,intron-Distal,intron-Proximal4.385415.63763K562AQR
chr9139334916139334982-3'-UTR,intron-Distal3.290306.07584K562ZC3H11A
chr9139335494139335575-3'-UTR,intron-Distal5.215446.99975K562UPF1
chr9139342099139342134-3'-UTR,CDS,intron-Distal,intron-Proximal4.0475813.21742K562DDX24
chr9139341977139342020-3'-UTR,intron-Distal,intron-Proximal4.961414.65563K562AQR
chr9139342525139342536-3'-UTR,intron-Distal,intron-Proximal3.777546.16312K562AQR
chr9139342302139342369-3'-UTR,CDS,intron-Distal,intron-Proximal3.600306.53375HepG2AQR
chr9139342497139342525-3'-UTR,intron-Distal,intron-Proximal4.959849.08030K562AQR
chr9139341264139341326-3'-UTR,CDS,intron-Distal,intron-Proximal4.078505.61068HepG2PRPF8
chr9139335796139335902-3'-UTR,intron-Distal3.125205.23856HepG2STAU2
chr9139342101139342132-3'-UTR,CDS,intron-Distal3.208604.51003HepG2PPIG
chr9139335723139335781-3'-UTR,intron-Distal3.769543.81692HepG2LIN28B
chr9139341324139341399-3'-UTR,CDS,intron-Distal4.300858.92108K562UCHL5
chr9139342056139342133-3'-UTR,CDS,intron-Distal,intron-Proximal3.238608.55801HepG2FXR2
chr9139341314139341406-3'-UTR,CDS,intron-Distal,intron-Proximal3.179296.49286HepG2PPIG
chr9139342238139342290-3'-UTR,intron-Distal,intron-Proximal5.330296.03057K562EFTUD2
chr9139341262139341297-3'-UTR,intron-Distal,intron-Proximal3.515954.35635K562PRPF8
chr9139341263139341270-3'-UTR,intron-Distal,intron-Proximal6.4211015.35700K562AQR
chr9139341339139341438-3'-UTR,CDS,intron-Distal,intron-Proximal3.000526.94569HepG2BUD13
chr9139342100139342177-3'-UTR,CDS,intron-Distal,intron-Proximal4.8372212.14994K562SF3B4
chr9139341438139341519-3'-UTR,CDS,intron-Distal,intron-Proximal3.025505.17453K562PRPF8
chr9139341338139341401-3'-UTR,CDS,intron-Distal3.0723010.33164K562DDX24
chr9139342987139343081-5'-UTR,CDS,intron-Distal5.339949.01334HepG2PCBP2
chr9139372056139372131-5'-UTR,CDS,intron-Distal3.408865.97243HepG2U2AF2
chr9139372028139372079-5'-UTR,CDS,intron-Distal4.057577.67612HepG2EIF3H
chr9139369034139369062-CDS,intron-Distal3.621374.28265HepG2FXR2
chr9139350511139350598-CDS,intron-Distal3.250385.59833HepG2GRWD1
chr9139368775139368831-CDS,intron-Distal3.390173.97184HepG2G3BP1
chr9139354162139354250-CDS,intron-Distal,intron-Proximal4.4903013.58669HepG2PRPF8
chr9139371050139371099-CDS,intron-Distal4.618689.56537K562FXR2
chr9139357380139357477-CDS,intron-Distal,intron-Proximal3.825615.06094K562HNRNPM
chr9139347880139347887-CDS,intron-Distal3.950303.36385K562UCHL5
chr9139345829139345910-CDS,intron-Distal,intron-Proximal4.0397821.84378HepG2SF3A3
chr9139354488139354530-CDS,intron-Distal,intron-Proximal3.303726.89519HepG2PPIG
chr9139360456139360505-CDS,intron-Distal,intron-Proximal3.272623.63681K562RBM15
chr9139353898139354003-CDS,intron-Distal3.375184.96088HepG2GRWD1
chr9139368506139368557-CDS,intron-Distal3.638379.51340K562FXR2
chr9139352033139352086-CDS,intron-Distal,intron-Proximal4.609233.25678HepG2SF3B4
chr9139369712139369776-CDS,intron-Distal3.746767.73808K562FMR1
chr9139338316139338414-CDS,intron-Distal,intron-Proximal4.983554.97857HepG2AQR
chr9139357542139357587-CDS,intron-Distal,intron-Proximal4.001036.82493K562DDX24
chr9139371234139371321-CDS,intron-Distal4.8232724.80610HepG2EIF3H
chr9139369647139369674-CDS,intron-Distal4.676955.61356K562FMR1
chr9139366384139366439-CDS,intron-Distal,intron-Proximal3.057648.55730HepG2PRPF8
chr9139357373139357428-CDS,intron-Distal,intron-Proximal4.626906.29942HepG2G3BP1
chr9139338224139338296-CDS,intron-Distal,intron-Proximal3.844189.10472K562AQR
chr9139351972139351997-CDS,intron-Distal3.6415310.12367K562YBX3
chr9139348620139348671-CDS,intron-Distal3.564425.20715K562FXR2
chr9139360898139360914-CDS,intron-Distal3.797733.02060K562LIN28B
chr9139370086139370169-CDS,intron-Distal3.366188.79148HepG2EIF3H
chr9139350463139350544-CDS,intron-Distal,intron-Proximal4.9761926.48592HepG2PRPF8
chr9139370543139370603-CDS,intron-Distal3.190593.63043HepG2GRWD1
chr9139369825139369862-CDS,intron-Distal4.352594.70436K562RBM15
chr9139347927139347962-CDS,intron-Distal3.546144.87139HepG2FXR2
chr9139350442139350605-CDS,intron-Distal,intron-Proximal3.6987920.94531K562DDX24
chr9139355627139355668-CDS,intron-Distal,intron-Proximal3.107735.33841K562DDX24
chr9139369822139369864-CDS,intron-Distal4.263698.23215K562FXR2
chr9139368498139368548-CDS,intron-Distal5.4973411.79327K562RBM15
chr9139360518139360561-CDS,intron-Distal,intron-Proximal5.004637.22868K562FXR2
chr9139348671139348760-CDS,intron-Distal3.6068610.25687K562FXR2
chr9139350014139350079-CDS,intron-Distal,intron-Proximal3.847746.33304K562BUD13
chr9139370067139370103-CDS,intron-Distal3.054703.22540HepG2G3BP1
chr9139369472139369577-CDS,intron-Distal4.836648.07593K562FXR1
chr9139350058139350098-CDS,intron-Distal3.548775.92553K562FXR2
chr9139368715139368757-CDS,intron-Distal3.351316.78888HepG2EIF3H
chr9139355668139355727-CDS,intron-Distal,intron-Proximal4.7551011.94830K562DDX24
chr9139358128139358179-CDS,intron-Distal,intron-Proximal3.230264.51097HepG2PRPF8
chr9139350238139350297-CDS,intron-Distal,intron-Proximal3.7538111.83056K562SF3B4
chr9139358124139358192-CDS,intron-Distal,intron-Proximal4.3516210.43162HepG2PPIG
chr9139361408139361449-CDS,intron-Distal,intron-Proximal3.823344.49000K562FXR2
chr9139360362139360421-CDS,intron-Distal,intron-Proximal3.408087.18622K562PRPF8
chr9139370979139371029-CDS,intron-Distal3.529226.55815K562FMR1
chr9139348609139348668-CDS,intron-Distal3.463876.28780K562DDX24
chr9139350035139350054-CDS,intron-Distal,intron-Proximal6.1020213.18785K562AQR
chr9139351980139352026-CDS,intron-Distal3.382355.26203HepG2FXR2
chr9139369778139369821-CDS,intron-Distal4.599055.03859HepG2HLTF
chr9139369910139369949-CDS,intron-Distal3.387363.63681K562RBM15
chr9139348514139348564-CDS,intron-Distal,intron-Proximal5.209029.06713HepG2PRPF8
chr9139351841139351901-CDS,intron-Distal,intron-Proximal4.8549016.50149HepG2PRPF8
chr9139361462139361497-CDS,intron-Distal4.823346.43970K562FXR2
chr9139361358139361410-CDS,intron-Distal,intron-Proximal4.711929.56266K562AQR
chr9139340088139340098-CDS,intron-Distal,intron-Proximal5.592935.69951K562AQR
chr9139360722139360779-CDS,intron-Distal4.093083.60441HepG2GRWD1
chr9139368704139368763-CDS,intron-Distal5.348928.78434K562FMR1
chr9139361420139361460-CDS,intron-Distal3.716063.88337HepG2FXR2
chr9139350012139350081-CDS,intron-Distal,intron-Proximal3.437789.83872HepG2PRPF8
chr9139369360139369422-CDS,intron-Distal3.269795.46211HepG2HLTF
chr9139345805139345862-CDS,intron-Distal,intron-Proximal3.571928.32355K562FXR2
chr9139360882139360931-CDS,intron-Distal,intron-Proximal3.438525.87745K562BUD13
chr9139370802139370858-CDS,intron-Distal3.199216.96313K562FXR2
chr9139340050139340103-CDS,intron-Distal,intron-Proximal3.299316.46344HepG2PRPF8
chr9139353604139353682-CDS,intron-Distal3.635695.99043HepG2GRWD1
chr9139370533139370618-CDS,intron-Distal3.569008.87070K562FXR2
chr9139360421139360487-CDS,intron-Distal4.557969.64961K562DDX24
chr9139351936139352023-CDS,intron-Distal3.613485.77496K562DDX24
chr9139345852139345919-CDS,intron-Distal,intron-Proximal4.425745.03032HepG2SF3B4
chr9139368561139368625-CDS,intron-Distal3.480867.97400K562FXR2
chr9139354211139354243-CDS,intron-Distal4.398694.67689HepG2PPIG
chr9139371226139371337-CDS,intron-Distal3.000997.98514HepG2HLTF
chr9139347879139347899-CDS,intron-Distal,intron-Proximal3.457143.48848HepG2FXR2
chr9139351997139352027-CDS,intron-Distal3.153647.87234K562YBX3
chr9139370491139370576-CDS,intron-Distal3.097694.18458HepG2G3BP1
chr9139368586139368630-CDS,intron-Distal4.131597.70265K562RBM15
chr9139357552139357604-CDS,intron-Distal,intron-Proximal3.477907.50495K562BUD13
chr9139358946139359027-CDS,intron-Distal,intron-Proximal3.800004.57180HepG2AQR
chr9139353594139353640-CDS,intron-Distal3.655837.13578K562FXR2
chr9139357541139357601-CDS,intron-Distal,intron-Proximal3.255803.66814K562U2AF2
chr9139357338139357454-CDS,intron-Distal,intron-Proximal3.5259313.78939K562DDX24
chr9139353588139353620-CDS,intron-Distal3.885645.74135K562DDX24
chr9139358870139358918-CDS,intron-Distal,intron-Proximal3.821644.96634HepG2PPIG
chr9139369725139369752-CDS,intron-Distal3.914645.59736K562FXR2
chr9139345766139345859-CDS,intron-Distal3.195818.74451K562DDX24
chr9139362893139362904-CDS,intron-Distal4.4915712.61927K562YBX3
chr9139368712139368747-CDS,intron-Distal4.035146.78826K562FXR2
chr9139350029139350141-CDS,intron-Distal,intron-Proximal3.305207.16988HepG2PPIG
chr9139368644139368712-CDS,intron-Distal4.4499114.66462K562FXR2
chr9139370807139370858-CDS,intron-Distal3.283506.89971K562FMR1
chr9139370533139370625-CDS,intron-Distal4.0578112.61460K562FMR1
chr9139350427139350509-CDS,intron-Distal,intron-Proximal3.550818.16971K562EFTUD2
chr9139368631139368704-CDS,intron-Distal3.676188.53736K562FMR1
chr9139339515139339599-CDS,intron-Distal,intron-Proximal3.376184.65362K562RBFOX2
chr9139362866139362893-CDS,intron-Distal,intron-Proximal4.1082711.79269K562YBX3
chr9139355626139355670-CDS,intron-Distal,intron-Proximal3.431523.41665HepG2GRWD1
chr9139371738139371837-CDS,intron-Distal3.310184.84172K562RBM15
chr9139358974139359025-CDS,intron-Distal,intron-Proximal3.587103.94787K562AQR
chr9139371908139371957-CDS,intron-Distal4.743836.26929K562YBX3
chr9139350062139350162-CDS,intron-Distal3.658745.46673HepG2FXR2
chr9139353539139353634-CDS,intron-Distal,intron-Proximal5.1476127.83409HepG2PRPF8
chr9139350056139350119-CDS,intron-Distal4.036126.16300K562FMR1
chr9139345803139345861-CDS,intron-Distal,intron-Proximal4.856118.85442HepG2FXR2
chr9139350098139350162-CDS,intron-Distal3.856906.72527K562FXR2
chr9139370816139370866-CDS,intron-Distal4.7775312.30468HepG2EIF3H
chr9139361422139361531-CDS,intron-Distal,intron-Proximal3.299225.27398HepG2G3BP1
chr9139350459139350507-CDS,intron-Distal,intron-Proximal4.3108317.89873K562AQR
chr9139354493139354523-CDS,intron-Distal,intron-Proximal4.086625.66107K562FXR2
chr9139347934139347990-CDS,intron-Distal,intron-Proximal5.577077.28294K562AQR
chr9139353544139353596-CDS,intron-Distal,intron-Proximal3.599926.14054K562PRPF8
chr9139358853139358888-CDS,intron-Distal,intron-Proximal4.240403.81597K562RBM15
chr9139345741139345803-CDS,intron-Distal3.908156.45305HepG2FXR2
chr9139370296139370371-CDS,intron-Distal3.999588.07615HepG2FXR2
chr9139345735139345796-CDS,intron-Distal4.223223.96931HepG2G3BP1
chr9139370987139371036-CDS,intron-Distal3.821437.33300K562FXR2
chr9139370099139370134-CDS,intron-Distal4.946707.12197K562FXR2
chr9139371230139371305-CDS,intron-Distal3.928595.60474K562RBM15
chr9139360688139360722-CDS,intron-Distal,intron-Proximal4.864996.01989HepG2PRPF8
chr9139360372139360415-CDS,intron-Distal,intron-Proximal3.571548.62617HepG2AQR
chr9139350190139350242-CDS,intron-Distal3.335747.99874HepG2BUD13
chr9139357350139357398-CDS,intron-Distal,intron-Proximal5.178837.80708K562FXR2
chr9139369764139369798-CDS,intron-Distal4.023583.73926K562RBM15
chr9139358924139358991-CDS,intron-Distal,intron-Proximal3.654763.36793K562FXR1
chr9139370530139370609-CDS,intron-Distal3.520869.24837HepG2EIF3H
chr9139340095139340155-CDS,intron-Distal,intron-Proximal3.733216.25732K562DDX24
chr9139361404139361489-CDS,intron-Distal,intron-Proximal4.292558.38377K562LIN28B
chr9139338304139338413-CDS,intron-Distal,intron-Proximal3.9199216.10216K562AQR
chr9139368905139368948-CDS,intron-Distal3.332055.74118K562YBX3
chr9139350186139350289-CDS,intron-Distal,intron-Proximal4.5058216.97899K562BUD13
chr9139351854139351903-CDS,intron-Distal,intron-Proximal4.832274.97857HepG2AQR
chr9139371327139371377-CDS,intron-Distal3.243833.68829K562YBX3
chr9139354449139354505-CDS,intron-Distal,intron-Proximal3.763825.73990HepG2PRPF8
chr9139361456139361532-CDS,intron-Distal,intron-Proximal3.731426.51082HepG2PPIG
chr9139368655139368707-CDS,intron-Distal4.030098.75614HepG2EIF3H
chr9139355627139355727-CDS,intron-Distal,intron-Proximal3.146805.83926K562UCHL5
chr9139358129139358180-CDS,intron-Distal,intron-Proximal3.357825.23557K562DDX24
chr9139358817139358913-CDS,intron-Distal,intron-Proximal3.6541216.24651HepG2PRPF8
chr9139351967139352023-CDS,intron-Distal3.918756.60968K562BUD13
chr9139350207139350257-CDS,intron-Distal,intron-Proximal3.137034.26865K562U2AF2
chr9139370711139370770-CDS,intron-Distal5.3578513.68891HepG2EIF3H
chr9139347927139347963-CDS,intron-Distal,intron-Proximal4.912115.57576K562FXR2
chr9139356914139356953-intron-Distal3.241363.32365K562RBFOX2
chr9139339471139339504-intron-Distal,intron-Proximal3.924964.41130K562AQR
chr9139345634139345706-intron-Distal,intron-Proximal4.704035.27173HepG2PRPF8
chr9139355583139355606-intron-Distal,intron-Proximal5.395797.28294K562AQR
chr9139350629139350675-intron-Distal,intron-Proximal4.229084.77050HepG2SF3B4
chr9139339371139339422-intron-Distal,intron-Proximal4.952556.91139HepG2QKI
chr9139357858139357896-intron-Distal,intron-Proximal3.429658.20147K562TIA1
chr9139357202139357282-intron-Distal,intron-Proximal3.472707.20196HepG2RBFOX2
chr9139345665139345701-intron-Distal,intron-Proximal5.959848.88118K562AQR
chr9139339460139339471-intron-Distal,intron-Proximal4.228353.52230K562AQR
chr9139357217139357265-intron-Distal,intron-Proximal3.342194.87883K562BUD13
chr9139339422139339493-intron-Distal,intron-Proximal4.411139.60550HepG2QKI
chr9139356670139356755-intron-Distal3.471248.12347HepG2RBFOX2
chr9139357292139357339-intron-Distal,intron-Proximal3.992118.27931K562AQR
chr9139358763139358833-intron-Distal,intron-Proximal3.656366.22597HepG2EFTUD2
chr9139355606139355629-intron-Distal,intron-Proximal4.459847.50107K562AQR
chr9139360403139360414-intron-Distal,intron-Proximal5.2663332.65529K562AQR
chr9139355730139355793-intron-Distal,intron-Proximal4.329828.76959K562SF3B4
chr9139357201139357293-intron-Distal,intron-Proximal3.093457.28781K562PRPF8
chr9139357607139357688-intron-Distal,intron-Proximal4.054766.24165HepG2SF3B4
chr9139360265139360315-intron-Distal,intron-Proximal4.281204.22101K562PRPF8
chr9139365417139365571-intron-Distal3.564563.86318K562DGCR8
chr9139357587139357658-intron-Distal,intron-Proximal4.1778110.56837K562SF3B4
chr9139358060139358124-intron-Distal,intron-Proximal3.420584.28282K562EFTUD2
chr9139338892139338952-intron-Distal4.288084.43431HepG2RBFOX2
chr9139358194139358260-intron-Distal,intron-Proximal5.3666713.03281K562SF3B4
chr9139345949139346046-intron-Distal,intron-Proximal3.390686.33953HepG2XPO5
chr9139345642139345708-intron-Distal,intron-Proximal4.353013.63072HepG2AQR
chr9139357656139357740-intron-Distal,intron-Proximal3.5708212.88150K562DDX24
chr9139350245139350317-intron-Distal,intron-Proximal4.317523.01266HepG2SF3B4
chr9139358635139358729-intron-Distal3.455417.55775HepG2U2AF2
chr9139358085139358131-intron-Distal,intron-Proximal4.484566.01372K562AQR
chr9139340070139340088-intron-Distal,intron-Proximal4.738046.48405K562AQR
chr9139355988139356075-intron-Distal4.253423.79026K562HNRNPM
chr9139338770139338838-intron-Distal3.878376.55430HepG2RBFOX2
chr9139340053139340070-intron-Distal,intron-Proximal4.859697.50107K562AQR
chr9139350007139350035-intron-Distal,intron-Proximal5.2391112.17654K562AQR
chr9139357198139357281-intron-Distal,intron-Proximal3.678465.36626HepG2EFTUD2
chr9139351810139351850-intron-Distal,intron-Proximal3.803926.32052K562AQR
chr9139357695139357748-intron-Distal3.105906.49379K562EFTUD2
chr9139358771139358813-intron-Distal,intron-Proximal3.231773.94281K562PRPF8
chr9139356755139356867-intron-Distal3.6763311.40010HepG2RBFOX2
chr9139360355139360403-intron-Distal,intron-Proximal5.4203036.03609K562AQR
chr9139351857139351889-intron-Distal,intron-Proximal6.1378923.38793K562AQR
chr9139345701139345708-intron-Distal,intron-Proximal5.738047.28294K562AQR
chr9139358827139358855-intron-Distal,intron-Proximal5.530168.43521K562AQR
chr9139358205139358273-intron-Distal,intron-Proximal3.554493.66703HepG2SF3B4
chr9139356769139356825-intron-Distal4.370765.79396K562DDX24
chr9139368422139368500-intron-Distal3.597936.00776K562PRPF8
chr9139357623139357687-intron-Distal,intron-Proximal3.440956.12893K562BUD13
chr9139351851139351857-intron-Distal,intron-Proximal5.4441320.18526K562AQR
chr9139351889139351895-intron-Distal,intron-Proximal5.2738317.55185K562AQR
chr9139353308139353362-intron-Distal4.324495.42763HepG2HNRNPC
chr9139358625139358701-intron-Distal3.177555.86366K562KHSRP
chr9139356665139356737-intron-Distal4.1502810.93499K562RBFOX2
chr9139357622139357663-intron-Distal,intron-Proximal3.834436.22597HepG2EFTUD2
chr9139358574139358625-intron-Distal3.303353.96958K562KHSRP
chr9139360357139360414-intron-Distal,intron-Proximal5.2064227.74914HepG2PRPF8
chr9139357811139357884-intron-Distal,intron-Proximal4.208538.19973HepG2EFTUD2
chr9139358753139358840-intron-Distal,intron-Proximal3.711775.85206K562EFTUD2
chr9139359109139359152-intron-Distal,intron-Proximal4.131304.54401K562KHSRP
chr9139358861139358872-intron-Distal,intron-Proximal4.360596.39176K562AQR
chr9139358482139358535-intron-Distal4.239726.59856K562SF3B4
chr9139357716139357722-intron-Distal4.964703.11681HepG2EFTUD2
chr9139358813139358853-intron-Distal,intron-Proximal4.144129.17684K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SEC16A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SEC16A is not available on ENCORE database.

  • 94 RBPs can affect the levels of SEC16A.  








The Knockdown/knockout RNA-Seq assay for SEC16A is not available on ENCORE database.





94 RBPs can affect the gene expression of SEC16A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SEC16AENSG00000148396.141253.158501629.99750-0.379303.035801.99430HepG2ADAR
SEC16AENSG00000148396.141290.697102198.69690-0.768505.125304.42930HepG2AKAP1
SEC16AENSG00000148396.141202.641301819.09370-0.597003.908902.98250HepG2ASCC1
SEC16AENSG00000148396.142991.352402679.835800.158602.017701.43720HepG2CKAP4
SEC16AENSG00000148396.142966.499402490.870900.252004.206103.32190HepG2DAZAP1
SEC16AENSG00000148396.141963.288102479.02490-0.336506.272505.09150HepG2DDX19B
SEC16AENSG00000148396.141941.168801592.204000.285802.313901.68600HepG2DDX21
SEC16AENSG00000148396.142757.551802105.877600.388903.050102.39820HepG2DDX3X
SEC16AENSG00000148396.142053.574701626.826700.336006.086805.17500HepG2DNAJC2
SEC16AENSG00000148396.143673.671101739.005701.0789020.2532018.74810HepG2EIF2S1
SEC16AENSG00000148396.142846.664701921.457800.567005.294504.41010HepG2EIF4A3
SEC16AENSG00000148396.143315.722801871.472900.825008.348407.18540HepG2EIF4B
SEC16AENSG00000148396.143031.468202354.123200.364703.492902.58620HepG2EIF4G2
SEC16AENSG00000148396.142007.859802682.13850-0.417704.717103.32980HepG2ESF1
SEC16AENSG00000148396.142957.104703899.60340-0.399106.100105.26690HepG2ETF1
SEC16AENSG00000148396.142213.889802619.25190-0.242602.022401.31080HepG2EWSR1
SEC16AENSG00000148396.141990.098901517.904900.390703.208501.98830HepG2FASTKD2
SEC16AENSG00000148396.142334.724703126.95000-0.421503.642402.76690HepG2FIP1L1
SEC16AENSG00000148396.141857.205901302.683200.511504.087503.14060HepG2FUBP3
SEC16AENSG00000148396.143076.058501939.723100.665107.121206.04770HepG2FXR1
SEC16AENSG00000148396.141998.371202756.66600-0.464104.025903.26640HepG2GPKOW
SEC16AENSG00000148396.142154.223002559.04860-0.248403.242202.18730HepG2HDGF
SEC16AENSG00000148396.141520.756101843.16710-0.277402.070801.46040HepG2HNRNPC
SEC16AENSG00000148396.142663.819101822.765100.547305.672104.70070HepG2HNRNPK
SEC16AENSG00000148396.141601.655501830.98160-0.193101.882201.37250HepG2HNRNPU
SEC16AENSG00000148396.143307.073201828.268100.8550013.2571011.90430HepG2IGF2BP2
SEC16AENSG00000148396.141853.336601473.142700.331102.559001.46820HepG2LARP7
SEC16AENSG00000148396.142882.793801940.405000.571006.001705.04650HepG2MAGOH
SEC16AENSG00000148396.142965.553901951.094000.603905.745704.86250HepG2MATR3
SEC16AENSG00000148396.143177.912301996.914000.670207.787006.75030HepG2NCBP2
SEC16AENSG00000148396.142537.701501647.650200.623003.699302.66160HepG2PABPC1
SEC16AENSG00000148396.143117.453601777.742600.8102011.405009.96640HepG2PABPC4
SEC16AENSG00000148396.143223.566801755.930200.8763011.4463010.34820HepG2PCBP1
SEC16AENSG00000148396.141430.715102465.36030-0.7851023.8240021.96440HepG2PRPF4
SEC16AENSG00000148396.142636.945001786.811400.5614013.1561012.14020HepG2PTBP1
SEC16AENSG00000148396.143200.577002502.977800.354608.741007.81130HepG2PUM1
SEC16AENSG00000148396.143298.784002501.121300.399305.749404.79450HepG2PUM2
SEC16AENSG00000148396.142744.813201934.976000.504308.876907.85540HepG2QKI
SEC16AENSG00000148396.142215.144303259.29120-0.557209.545508.71400HepG2RBM22
SEC16AENSG00000148396.143058.466701756.184900.8003017.1219015.53640HepG2RBM25
SEC16AENSG00000148396.142346.122401988.477500.238502.949702.39380HepG2NELFE
SEC16AENSG00000148396.141874.115702957.75040-0.6583010.607909.42050HepG2RPLP0
SEC16AENSG00000148396.141166.991201457.37970-0.320602.132201.43420HepG2RRP9
SEC16AENSG00000148396.142211.328201630.573000.439409.438108.35970HepG2SAFB2
SEC16AENSG00000148396.141854.117501459.962200.344702.620101.70630HepG2SERBP1
SEC16AENSG00000148396.142865.272101860.145700.6232017.2330015.94880HepG2SF3B4
SEC16AENSG00000148396.142956.601902260.877200.387009.432008.25920HepG2SLBP
SEC16AENSG00000148396.142747.166701781.183400.625005.198003.85970HepG2SMNDC1
SEC16AENSG00000148396.141602.935902897.27740-0.854007.740106.42600HepG2SNRNP70
SEC16AENSG00000148396.142374.557601941.652900.290304.401603.83890HepG2SRSF1
SEC16AENSG00000148396.141980.905802801.91350-0.500303.958502.73880HepG2SRSF3
SEC16AENSG00000148396.141976.131101579.692800.322905.084404.37730HepG2SRSF9
SEC16AENSG00000148396.142553.110003195.93880-0.324003.173202.63300HepG2SSB
SEC16AENSG00000148396.143358.567602647.599500.343107.618106.67090HepG2SUCLG1
SEC16AENSG00000148396.142900.550302110.768400.458505.728504.40050HepG2SUPT6H
SEC16AENSG00000148396.141384.987501901.78920-0.457504.122203.32050HepG2SUPV3L1
SEC16AENSG00000148396.141060.555801745.40960-0.7187014.6158013.47670HepG2TAF15
SEC16AENSG00000148396.142262.476801603.606700.496507.143805.81260HepG2TIA1
SEC16AENSG00000148396.142114.382101779.159100.248902.255401.79450HepG2TIAL1
SEC16AENSG00000148396.142819.170302303.566600.291302.941102.03730HepG2TUFM
SEC16AENSG00000148396.143369.995402438.337800.466704.372903.30530HepG2UBE2L3
SEC16AENSG00000148396.14905.104001123.34340-0.311602.159501.48850HepG2UCHL5
SEC16AENSG00000148396.142494.203303225.47020-0.370907.741606.66860HepG2UPF1
SEC16AENSG00000148396.142827.640603315.31150-0.229502.820101.76420HepG2UTP18
SEC16AENSG00000148396.142467.525703114.06050-0.335706.223805.38440HepG2UTP3
SEC16AENSG00000148396.141348.499501872.10740-0.473304.867403.91400HepG2XRN2
SEC16AENSG00000148396.141224.209502433.05740-0.9909044.2173042.20430HepG2ZC3H8
SEC16AENSG00000148396.144200.391903547.395800.243705.016804.33450HepG2ZNF622
SEC16AENSG00000148396.144311.685405471.51720-0.343704.694303.98960K562AGGF1
SEC16AENSG00000148396.145122.042404258.295600.266302.317301.77300K562AQR
SEC16AENSG00000148396.145429.731406538.53810-0.268102.762601.58920K562CCDC124
SEC16AENSG00000148396.146044.277107208.19330-0.254103.150102.11160K562CELF1
SEC16AENSG00000148396.143358.821204913.18270-0.5487015.9580014.51160K562DDX47
SEC16AENSG00000148396.143175.147002287.933300.472704.819003.59910K562EFTUD2
SEC16AENSG00000148396.144211.731903496.965700.268204.093802.60570K562EIF2S1
SEC16AENSG00000148396.143234.308902449.055100.401102.806101.76230K562EIF3D
SEC16AENSG00000148396.144048.837703326.093700.283602.554001.76620K562EIF4A3
SEC16AENSG00000148396.143737.445102995.349700.319204.366202.85900K562EIF4B
SEC16AENSG00000148396.142067.848102954.33880-0.514706.410805.08180K562FIP1L1
SEC16AENSG00000148396.141143.463601743.52320-0.608604.895303.89350K562G3BP2
SEC16AENSG00000148396.143179.312002407.277200.401204.438303.43960K562GPKOW
SEC16AENSG00000148396.142512.454104546.10220-0.8555019.9265017.79970K562GRSF1
SEC16AENSG00000148396.141928.224402430.06730-0.333702.283701.44210K562HNRNPM
SEC16AENSG00000148396.142520.071704005.34200-0.6685010.277708.76850K562HSPD1
SEC16AENSG00000148396.144355.997902613.528500.736908.764006.55550K562IGF2BP2
SEC16AENSG00000148396.143321.957002657.913900.321602.978501.72790K562IGF2BP3
SEC16AENSG00000148396.144926.558506041.91040-0.294402.071201.36800K562KIF1C
SEC16AENSG00000148396.143717.320504744.24940-0.351902.128301.37770K562NAA15
SEC16AENSG00000148396.143847.232902684.408100.519108.539706.11090K562PCBP1
SEC16AENSG00000148396.143173.198502442.839600.377304.019602.83520K562PCBP2
SEC16AENSG00000148396.142603.596903353.87640-0.365303.357402.43870K562PPIG
SEC16AENSG00000148396.144244.390505645.82640-0.411604.124103.48070K562PUS1
SEC16AENSG00000148396.144091.513905501.41730-0.427206.186505.32550K562RBM15
SEC16AENSG00000148396.142084.685301652.787900.334803.282601.82400K562RBM25
SEC16AENSG00000148396.143494.244402493.475500.486705.146203.06540K562RBM34
SEC16AENSG00000148396.142809.624402334.144100.267402.520901.57800K562RCC2
SEC16AENSG00000148396.141544.163202275.94520-0.559604.476002.77240K562RRP9
SEC16AENSG00000148396.145561.840704546.815200.290604.463403.44630K562SF3A3
SEC16AENSG00000148396.142749.042001812.056400.6012010.973509.20950K562SF3B4
SEC16AENSG00000148396.143247.040302695.454400.268502.486801.49630K562SRSF4
SEC16AENSG00000148396.143175.066102470.291800.362003.410202.22290K562SRSF5
SEC16AENSG00000148396.142840.675203406.31350-0.262002.725601.91310K562SYNCRIP
SEC16AENSG00000148396.143619.728302646.684400.451604.787103.84730K562TARDBP
SEC16AENSG00000148396.143590.252102553.088600.491707.615406.15350K562TIA1
SEC16AENSG00000148396.143427.880402505.903800.451905.349003.71560K562TRA2A
SEC16AENSG00000148396.146356.325504885.898300.379509.396708.16860K562UPF1
SEC16AENSG00000148396.143837.993004796.43490-0.321603.086502.17150K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SEC16A is not available on ENCORE database.





15 RBPs can affect the splicing of SEC16A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESEC16AENSG00000148396.14chr9-139339503139339563139338274139338352139340096139340171-0.406000.000660.02700excludedK562PRPF8
SESEC16AENSG00000148396.14chr9-139351895139352036139350504139350618139353585139353691-0.148000.003280.08980excludedK562PRPF8
SESEC16AENSG00000148396.14chr9-139340096139340171139338274139338352139341306139341401-0.373000.002970.05002excludedHepG2U2AF1
SESEC16AENSG00000148396.14chr9-1393400961393401711393395031393395631393413061393414010.370000.000160.04567includedHepG2ILF3
SESEC16AENSG00000148396.14chr9-139340096139340171139338274139338352139341306139341401-0.346000.000060.00107excludedK562AQR
SESEC16AENSG00000148396.14chr9-139351895139352036139350504139350618139353585139353691-0.100000.001630.01838excludedK562AQR
SESEC16AENSG00000148396.14chr9-139339503139339563139338274139338352139340096139340171-0.661000.000000.00000excludedHepG2DDX3X
SESEC16AENSG00000148396.14chr9-139339503139339563139338274139338352139340096139340171-0.706000.000000.00000excludedHepG2NCBP2
SESEC16AENSG00000148396.14chr9-139340096139340171139338274139338352139341306139341401-0.330000.002940.07049excludedHepG2SF3A3
SESEC16AENSG00000148396.14chr9-139339503139339563139338274139338352139340096139340171-0.231000.000530.07829excludedK562EIF4G2
SESEC16AENSG00000148396.14chr9-139339503139339563139338274139338352139340096139340171-0.347000.000200.01046excludedK562TARDBP
SESEC16AENSG00000148396.14chr9-139339503139339563139338274139338352139340096139340171-0.271000.000540.02368excludedK562HNRNPU
A3SSSEC16AENSG00000148396.14chr9-1393382741393384331393382741393383521393395031393395630.254000.000480.04589longerK562AGGF1
A3SSSEC16AENSG00000148396.14chr9-1393413061393415071393413061393414011393416781393418160.184000.001450.09503longerHepG2SF3A3
A3SSSEC16AENSG00000148396.14chr9-1393395031393396811393395031393395631393400961393401710.352000.000880.08975longerK562EFTUD2
A3SSSEC16AENSG00000148396.14chr9-1393518951393521241393518951393520361393535851393537510.060000.001300.00878longerK562AQR
A3SSSEC16AENSG00000148396.14chr9-1393413061393415071393413061393414671393416781393418160.435000.001910.01236longerK562AQR
A3SSSEC16AENSG00000148396.14chr9-1393485601393488051393485601393487791393500521393502450.274000.000080.00068longerK562AQR
A3SSSEC16AENSG00000148396.14chr9-1393420201393421821393420201393421321393423041393424020.059000.000210.00174longerK562AQR
A3SSSEC16AENSG00000148396.14chr9-1393382741393384981393382741393383521393395031393395630.370000.000000.00002longerK562AQR
A3SSSEC16AENSG00000148396.14chr9-1393628661393629821393628661393629641393664261393666330.124000.005750.03269longerK562AQR
A3SSSEC16AENSG00000148396.14chr9-1393395031393396811393395031393395631393400961393401710.260000.001150.00785longerK562AQR
A3SSSEC16AENSG00000148396.14chr9-1393542081393544171393542081393543261393544931393545380.089000.000000.00000longerK562AQR
A3SSSEC16AENSG00000148396.14chr9-1393413061393414671393413061393414011393416781393418160.337000.000000.00217longerK562TARDBP
A3SSSEC16AENSG00000148396.14chr9-139341306139341467139341306139341401139341678139341816-0.195000.000790.05772shorterHepG2SF3B4
A3SSSEC16AENSG00000148396.14chr9-1393395031393396811393395031393395631393400961393401710.437000.000800.09486longerK562PRPF8
MXESEC16AENSG00000148396.14chr9-1393395031393395631393400961393401711393382741393383521393413061393414010.325000.001080.028161includedK562TARDBP
MXESEC16AENSG00000148396.14chr9-1393628661393629641393664261393665631393614081393615351393685001393715330.156000.000810.048471includedK562LARP7
MXESEC16AENSG00000148396.14chr9-1393395031393395631393400961393401711393382741393383521393413061393414010.287000.000120.013041includedHepG2QKI
MXESEC16AENSG00000148396.14chr9-1393395031393395631393400961393401711393382741393383521393413061393414010.323000.000030.003121includedHepG2DDX3X
MXESEC16AENSG00000148396.14chr9-1393395031393395631393400961393401711393382741393383521393413061393414010.403000.000000.000011includedHepG2NCBP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SEC16A is not avaliable on ENCORE database.