RP11-798K3.2

General Information

Gene Name       : RP11-798K3.2
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-798K3.2)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-798K3.2 is not avaliable on ENCORE database.



Proteins bound to RNA

  • RP11-798K3.2 RNA is bound by 22 proteins.  







eCLIP assay for RP11-798K3.2 is not avaliable on ENCORE database.





22 proteins are bound to RP11-798K3.2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr156728557267285688-intron-Distal3.113626.15466HepG2MATR3
chr156732612967326273-intron-Distal3.4187410.03827HepG2PRPF4
chr156732769767327742-intron-Distal4.434554.58231HepG2HNRNPK
chr156732679467326885-intron-Distal4.3270356.17489HepG2HNRNPL
chr156733802067338068-intron-Distal3.457163.54383HepG2HNRNPL
chr156733956267339622-intron-Distal3.739965.81300HepG2HNRNPL
chr156732801667328114-intron-Distal5.6510610.60598HepG2HNRNPK
chr156733455667334617-intron-Distal3.478784.32209HepG2GTF2F1
chr156728108167281107-intron-Distal3.763215.28137HepG2MATR3
chr156732839067328545-intron-Distal4.273923.88642HepG2TAF15
chr156732410967324170-intron-Distal5.073614.98508HepG2ILF3
chr156734741167347483-intron-Distal3.486657.52925HepG2PTBP1
chr156732804267328127-intron-Distal5.182755.81696HepG2XRN2
chr156731805367318138-intron-Distal4.020078.88673HepG2PTBP1
chr156732126967321349-intron-Distal3.984063.55640HepG2QKI
chr156727986067279941-intron-Distal3.891407.97516HepG2GRWD1
chr156727952267279596-intron-Distal3.183764.81700HepG2U2AF2
chr156728110767281175-intron-Distal4.227769.26703HepG2MATR3
chr156732784467327981-intron-Distal6.1085114.56803HepG2HNRNPK
chr156728088667280931-intron-Distal3.494869.54287HepG2SUGP2
chr156728035867280465-intron-Distal3.9059011.22575HepG2SUGP2
chr156728179867281861-intron-Distal5.000485.72657HepG2MATR3
chr156732667067326767-intron-Distal3.4705412.44196HepG2HNRNPL
chr156728561067285699-intron-Distal6.1778755.47493HepG2PTBP1
chr156730181367301873-intron-Distal4.597404.24478HepG2CSTF2
chr156728103767281117-intron-Distal4.6717823.06289HepG2SUGP2
chr156732774867327803-intron-Distal3.674133.84715HepG2HNRNPK
chr156734114267341190-intron-Distal3.250865.30470HepG2XPO5
chr156730562067305681-intron-Distal4.3345110.00670HepG2HNRNPL
chr156728111767281167-intron-Distal4.1634417.65138HepG2SUGP2
chr156734596167346071-intron-Distal3.135376.67557HepG2PTBP1
chr156733347567333555-intron-Distal4.793385.36996HepG2PCBP2
chr156734839367348459-intron-Distal4.200503.71677HepG2HNRNPL
chr156728127467281313-intron-Distal3.151736.36326HepG2SUGP2
chr156733461767334675-intron-Distal4.567653.57264HepG2GTF2F1
chr156733491367334955-intron-Distal3.578464.73828HepG2AGGF1
chr156733111867331165-intron-Distal5.4424219.89577HepG2QKI
chr156732768567327744-intron-Distal5.1971712.06932HepG2DDX59
chr156728069667280789-intron-Distal4.2998826.65675HepG2SUGP2
chr156732759767327671-intron-Distal3.5204112.65523HepG2DDX59
chr156732613667326245-intron-Distal3.082055.65404HepG2FUS
chr156733395667333969-intron-Distal3.686354.19039HepG2PTBP1
chr156728089667280931-intron-Distal4.539484.32882HepG2MATR3
chr156733116567331195-intron-Distal3.926324.83406HepG2QKI
chr156728180767281856-intron-Distal4.040863.09122HepG2PTBP1
chr156732786667327943-intron-Distal6.5850517.24230HepG2DDX59
chr156733109267331118-intron-Distal6.1614813.99567HepG2QKI
chr156728070767280775-intron-Distal3.5348910.59040HepG2MATR3
chr156728247567282529-intron-Distal4.228783.54208HepG2SUGP2
chr156733844467338537-intron-Distal3.327889.43543HepG2HNRNPL
chr156732815567328291-intron-Distal5.5717829.11774HepG2DDX59
chr156728078967280826-intron-Distal4.299469.06128HepG2SUGP2
chr156732614267326263-intron-Distal3.046855.50589HepG2XRN2
chr156728557067285610-intron-Distal5.8744924.98467HepG2PTBP1
chr156732614067326213-intron-Distal4.731994.13073HepG2GTF2F1
chr156732813567328251-intron-Distal5.9584013.78409HepG2HNRNPK
chr156732119967321276-intron-Distal3.100163.42396HepG2U2AF2
chr156733383067333876-intron-Distal3.725246.41195HepG2PTBP1
chr156729214967292247-intron-Distal3.566484.45128HepG2HNRNPL
chr156733344967333554-intron-Distal4.2169222.88236HepG2PTBP1
chr156733103067331089-intron-Distal4.393878.08894HepG2QKI
chr156735145567351547-intron-Distal4.6481019.38162HepG2NCBP2
chr156732613367326252-intron-Distal5.3720221.11059HepG2CSTF2T
chr156731485767314950-intron-Distal4.905994.89163HepG2HNRNPL
chr156732775467327789-intron-Distal4.123465.83708HepG2DDX59
chr156729970867299757-intron-Distal4.280733.04956HepG2HNRNPL
chr156732802867328125-intron-Distal4.8013513.17916HepG2DDX59
chr156731813867318216-intron-Distal4.074887.55717HepG2PTBP1
chr156728181267281831-intron-Distal4.352004.53347HepG2SUGP2
chr156728136967281434-intron-Distal4.2529115.67711HepG2SUGP2
chr156727994967280004-intron-Distal,intron-Proximal5.069827.27507HepG2U2AF2
chr156732612967326179-intron-Distal4.534323.50322HepG2CDC40
chr156732409467324161-intron-Distal3.838054.09469HepG2XPO5
chr156728023867280358-intron-Distal3.0052611.81821HepG2SUGP2
chr156734338167343425-intron-Distal3.046164.72285HepG2HNRNPL
chr156728143467281467-intron-Distal4.739325.58061HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-798K3.2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-798K3.2 is not available on ENCORE database.

  • 96 RBPs can affect the levels of RP11-798K3.2.  








The Knockdown/knockout RNA-Seq assay for RP11-798K3.2 is not available on ENCORE database.





96 RBPs can affect the gene expression of RP11-798K3.2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-798K3.2ENSG00000259347.1298.59200142.224701.069904.281103.12830HepG2ABCF1
RP11-798K3.2ENSG00000259347.128.6953093.63390-1.706207.635606.72810HepG2ACO1
RP11-798K3.2ENSG00000259347.131.10310230.52740-2.8898023.6974022.31220HepG2AKAP1
RP11-798K3.2ENSG00000259347.1179.97590268.92830-0.579402.250801.30470HepG2AKAP8
RP11-798K3.2ENSG00000259347.134.6690094.06990-1.440105.956604.86840HepG2AKAP8L
RP11-798K3.2ENSG00000259347.1170.00320116.155200.549402.103701.42420HepG2CALR
RP11-798K3.2ENSG00000259347.1161.9880069.806301.214404.556703.29000HepG2CCAR1
RP11-798K3.2ENSG00000259347.141.29790213.50480-2.3701015.0964013.37430HepG2CNOT7
RP11-798K3.2ENSG00000259347.1131.4261043.431201.597303.829303.03330HepG2CPSF6
RP11-798K3.2ENSG00000259347.126.68180105.61380-1.984909.857608.78630HepG2CELF1
RP11-798K3.2ENSG00000259347.1182.73750113.595400.685802.512801.80080HepG2DAZAP1
RP11-798K3.2ENSG00000259347.1188.39560100.008300.913504.697103.49810HepG2DDX24
RP11-798K3.2ENSG00000259347.1105.3322031.574501.738004.951003.29280HepG2DDX27
RP11-798K3.2ENSG00000259347.193.9957044.742101.070903.593202.48290HepG2DHX30
RP11-798K3.2ENSG00000259347.1228.1267089.581001.3485010.540609.39310HepG2DKC1
RP11-798K3.2ENSG00000259347.179.4461046.387700.776102.047201.43180HepG2DNAJC21
RP11-798K3.2ENSG00000259347.155.83940107.84950-0.949703.174901.91560HepG2EIF2S2
RP11-798K3.2ENSG00000259347.133.5467070.80570-1.077702.982502.04890HepG2EIF3D
RP11-798K3.2ENSG00000259347.146.80990196.21650-2.0676012.2676010.87130HepG2EIF4B
RP11-798K3.2ENSG00000259347.1212.46000107.331500.985005.235504.13380HepG2EIF4G2
RP11-798K3.2ENSG00000259347.1249.81600123.168401.020105.779404.25420HepG2ESF1
RP11-798K3.2ENSG00000259347.18.72420143.60170-4.0409025.1008023.21770HepG2FIP1L1
RP11-798K3.2ENSG00000259347.186.6340028.092201.624704.808403.16810HepG2FKBP4
RP11-798K3.2ENSG00000259347.1111.0986043.513101.352203.248402.14370HepG2FTO
RP11-798K3.2ENSG00000259347.1224.32000140.281600.677103.062302.23830HepG2FUBP3
RP11-798K3.2ENSG00000259347.140.59720127.03410-1.645807.530405.76410HepG2FUS
RP11-798K3.2ENSG00000259347.175.94050203.34130-1.421008.733707.56520HepG2FXR1
RP11-798K3.2ENSG00000259347.1111.00970188.61780-0.764803.255502.53690HepG2G3BP1
RP11-798K3.2ENSG00000259347.1345.56680200.256500.787004.950703.74900HepG2G3BP2
RP11-798K3.2ENSG00000259347.129.4053063.04370-1.100302.576901.71790HepG2GEMIN5
RP11-798K3.2ENSG00000259347.140.1110081.13180-1.016302.610901.62410HepG2GNB2L1
RP11-798K3.2ENSG00000259347.1344.0332049.222702.8051032.3153030.41360HepG2GPKOW
RP11-798K3.2ENSG00000259347.198.62680197.66450-1.003004.596403.17310HepG2GRSF1
RP11-798K3.2ENSG00000259347.1153.3073046.832201.710809.224608.14510HepG2HNRNPA1
RP11-798K3.2ENSG00000259347.1135.2319052.093801.376204.989504.07870HepG2HNRNPC
RP11-798K3.2ENSG00000259347.1187.6230035.720502.3929021.8443020.09630HepG2HNRNPF
RP11-798K3.2ENSG00000259347.1454.4854046.975003.2742021.3957019.90410HepG2HNRNPLL
RP11-798K3.2ENSG00000259347.1164.76990292.94570-0.830203.932602.46060HepG2HSPD1
RP11-798K3.2ENSG00000259347.1218.1340035.173802.6325026.6444024.68530HepG2IGF2BP1
RP11-798K3.2ENSG00000259347.144.15240179.93860-2.026907.209805.66990HepG2IGF2BP3
RP11-798K3.2ENSG00000259347.1141.0930085.590200.721003.110302.03130HepG2KIF1C
RP11-798K3.2ENSG00000259347.1175.47380292.65660-0.738002.995201.69680HepG2KRR1
RP11-798K3.2ENSG00000259347.126.9191079.46090-1.561604.872803.36820HepG2LARP7
RP11-798K3.2ENSG00000259347.160.46160204.54740-1.7583011.077309.87650HepG2MATR3
RP11-798K3.2ENSG00000259347.130.9242074.10550-1.260802.285901.32770HepG2METAP2
RP11-798K3.2ENSG00000259347.137.19650116.17290-1.643007.742406.45290HepG2MSI2
RP11-798K3.2ENSG00000259347.1241.5644047.930102.3333015.7630013.47170HepG2MTPAP
RP11-798K3.2ENSG00000259347.1177.6981097.562500.864904.050202.58180HepG2NAA15
RP11-798K3.2ENSG00000259347.1126.17870209.36290-0.730503.166802.49180HepG2NCBP2
RP11-798K3.2ENSG00000259347.1515.5732041.659503.6294066.7263064.04880HepG2NSUN2
RP11-798K3.2ENSG00000259347.1274.46820186.438500.557802.509401.81900HepG2PABPC4
RP11-798K3.2ENSG00000259347.188.65510216.55990-1.288509.952108.91540HepG2PCBP1
RP11-798K3.2ENSG00000259347.196.5084046.155901.064003.919803.05830HepG2PPIL4
RP11-798K3.2ENSG00000259347.1129.0778086.073900.584501.973201.31210HepG2PRPF4
RP11-798K3.2ENSG00000259347.168.28090126.42030-0.888702.885801.64220HepG2PRPF6
RP11-798K3.2ENSG00000259347.164.09700220.36330-1.7816016.4404015.32130HepG2PTBP1
RP11-798K3.2ENSG00000259347.115.50500114.11990-2.8797017.7294016.49520HepG2PUM1
RP11-798K3.2ENSG00000259347.135.71940114.04350-1.674807.819306.71730HepG2PUM2
RP11-798K3.2ENSG00000259347.141.74600116.05230-1.475104.685903.78130HepG2RAVER1
RP11-798K3.2ENSG00000259347.112.3151092.88460-2.9150012.7935011.84240HepG2RBM22
RP11-798K3.2ENSG00000259347.170.12550216.59200-1.6270012.4946011.12500HepG2RBM25
RP11-798K3.2ENSG00000259347.1150.44290245.23860-0.705003.876303.25650HepG2NELFE
RP11-798K3.2ENSG00000259347.1241.5658038.491002.6497025.4895023.85390HepG2RPLP0
RP11-798K3.2ENSG00000259347.1222.41500113.995800.964204.600203.39290HepG2RPS10
RP11-798K3.2ENSG00000259347.136.8089068.89610-0.904402.102101.55940HepG2RPS19
RP11-798K3.2ENSG00000259347.139.0240088.37210-1.179203.225202.36050HepG2RPS2
RP11-798K3.2ENSG00000259347.191.3496046.084000.987003.296502.60370HepG2SAFB2
RP11-798K3.2ENSG00000259347.1122.1828069.149500.821102.749301.81380HepG2SERBP1
RP11-798K3.2ENSG00000259347.129.59690175.25120-2.5659018.7609016.93850HepG2SF3A3
RP11-798K3.2ENSG00000259347.1156.62620229.41670-0.550602.527901.95830HepG2SF3B4
RP11-798K3.2ENSG00000259347.114.36050170.62070-3.570606.697704.23060HepG2SFPQ
RP11-798K3.2ENSG00000259347.1165.10890103.066300.679702.832002.12200HepG2SLBP
RP11-798K3.2ENSG00000259347.117.9619053.74010-1.581104.119403.36130HepG2SMN1
RP11-798K3.2ENSG00000259347.1158.7485051.730601.617603.131402.29880HepG2SNRNP70
RP11-798K3.2ENSG00000259347.147.32500239.46540-2.3391023.2663022.18590HepG2SRSF1
RP11-798K3.2ENSG00000259347.136.60790106.14120-1.535806.951706.02200HepG2SRSF5
RP11-798K3.2ENSG00000259347.1187.9056035.096802.4205022.4860020.86060HepG2SRSF7
RP11-798K3.2ENSG00000259347.1244.7098091.097001.4255013.6202012.65590HepG2SSB
RP11-798K3.2ENSG00000259347.1150.00970291.73210-0.959606.051804.25170HepG2SSRP1
RP11-798K3.2ENSG00000259347.1109.76480186.62930-0.765803.344902.12090HepG2STIP1
RP11-798K3.2ENSG00000259347.120.93080120.72330-2.528009.565408.52760HepG2SUCLG1
RP11-798K3.2ENSG00000259347.1173.8200096.924800.842603.657002.58590HepG2SUPT6H
RP11-798K3.2ENSG00000259347.198.8914033.597701.557404.244603.43240HepG2SUPV3L1
RP11-798K3.2ENSG00000259347.1166.5542045.812401.862106.788005.72040HepG2TARDBP
RP11-798K3.2ENSG00000259347.14.8240022.51560-2.222602.368901.44050HepG2TFIP11
RP11-798K3.2ENSG00000259347.1254.6379050.277902.340407.561206.80920HepG2TIAL1
RP11-798K3.2ENSG00000259347.136.16410122.81400-1.763807.950306.88800HepG2U2AF1
RP11-798K3.2ENSG00000259347.153.90440183.18210-1.764802.830001.82920HepG2U2AF2
RP11-798K3.2ENSG00000259347.1104.95920155.42090-0.566402.206101.57150HepG2UPF1
RP11-798K3.2ENSG00000259347.1139.4361030.749002.180908.910707.06880HepG2UPF2
RP11-798K3.2ENSG00000259347.154.68840150.05290-1.456208.089607.15180HepG2UTP3
RP11-798K3.2ENSG00000259347.1313.55250192.134700.706503.626302.36350HepG2XPO5
RP11-798K3.2ENSG00000259347.150.17320127.62530-1.346905.753204.26010HepG2XRCC6
RP11-798K3.2ENSG00000259347.1196.5981033.073402.5714016.0549014.33990HepG2XRN2
RP11-798K3.2ENSG00000259347.1185.4620084.943601.126407.348906.34070HepG2ZC3H8
RP11-798K3.2ENSG00000259347.1262.28560170.933400.617604.030903.40390HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-798K3.2 is not available on ENCORE database.





9 RBPs can affect the splicing of RP11-798K3.2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERP11-798K3.2ENSG00000259347.1chr15-6730165567301702672794956727960067351477673515910.640000.004050.06408includedHepG2U2AF1
SERP11-798K3.2ENSG00000259347.1chr15-6730165567301702672794956727960067351477673515910.100000.001030.05781includedHepG2NCBP2
SERP11-798K3.2ENSG00000259347.1chr15-672799306727998567279495672796006735147767351591-0.158000.000020.00312excludedHepG2TIAL1
SERP11-798K3.2ENSG00000259347.1chr15-6730165567301702672794956727960067351477673515910.164000.000000.00034includedHepG2SF3B4
SERP11-798K3.2ENSG00000259347.1chr15-6728224967282381672794956727998567351477673515910.065000.000670.04593includedHepG2SRSF9
SERP11-798K3.2ENSG00000259347.1chr15-6730165567301702672794956727998567351477673515910.158000.000310.06784includedHepG2FUS
SERP11-798K3.2ENSG00000259347.1chr15-6730165567301702672794956727998567351477673515910.079000.000600.07053includedHepG2KHSRP
A3SSRP11-798K3.2ENSG00000259347.1chr15-6727949567279985672794956727960067351477673515910.365000.000140.00758longerHepG2U2AF1
A3SSRP11-798K3.2ENSG00000259347.1chr15-6727949567279985672794956727960067351477673515910.221000.000110.09324longerHepG2SSB
A3SSRP11-798K3.2ENSG00000259347.1chr15-6727949567279985672794956727960067351477673515910.352000.000020.02481longerHepG2LARP4
MXERP11-798K3.2ENSG00000259347.1chr15-67279930672799856730165567301702672794956727960067351477673515910.360000.000000.000381includedHepG2SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RP11-798K3.2 is not avaliable on ENCORE database.