RNF138

General Information

Gene Name       : RNF138
Gene ID             : ENSG00000134758.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RNF138)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF138ENSG00000134758.1329.4523.3926.42ENCSR000AEF
HepG2RNF138ENSG00000134758.1326.6719.1222.90ENCSR985KAT
K562RNF138ENSG00000134758.1346.3744.2945.33ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
RNF138Ribo-STAMP-293TshRNABGRSLV04-51,BGRSLV04-52BGRSLV04-1,BGRSLV04-2NotSatisfiedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF138 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF138 RNA is bound by 14 proteins.  







eCLIP assay for RNF138 is not avaliable on ENCORE database.





14 proteins are bound to RNF138 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr182970928029709330+3'-UTR3.9233712.75399K562PUM2
chr182969172829691827+3'-UTR,CDS,intron-Distal3.270553.85266K562NOLC1
chr182970933629709420+3'-UTR4.0986820.46341K562PUM2
chr182970907929709144+3'-UTR,CDS,intron-Proximal3.047453.13705K562BUD13
chr182970946029709525+3'-UTR3.319134.25440K562TIA1
chr182970918829709250+3'-UTR4.5702118.82392K562PUM2
chr182967268729672859+5'-UTR,CDS,intron-Distal,intron-Proximal3.266597.10982HepG2GRWD1
chr182967212329672191+5'-UTR,intron-Distal3.466835.37252K562YBX3
chr182967268529672703+5'-UTR,intron-Distal4.5325518.63047K562YBX3
chr182967183829672014+5'-UTR,intron-Distal3.101813.98217K562DDX3X
chr182967185629671914+5'-UTR,intron-Distal3.886697.86788K562YBX3
chr182967270329672730+5'-UTR,intron-Distal4.1857116.76678K562YBX3
chr182970348029703505+CDS,intron-Distal,intron-Proximal3.354374.41952K562IGF2BP1
chr182969377729693824+CDS,intron-Distal,intron-Proximal3.250016.02070K562IGF2BP1
chr182970343229703509+CDS,intron-Distal,intron-Proximal5.9221911.43913K562SF3B4
chr182970471829704808+CDS4.5766811.26012K562IGF2BP1
chr182968839929688508+intron-Distal4.394034.10688K562KHSRP
chr182969526629695329+intron-Distal3.253283.45178K562MATR3
chr182967295429673117+intron-Distal3.865803.57018HepG2HNRNPK
chr182970894429709068+intron-Distal,intron-Proximal3.778535.98773K562KHSRP
chr182970638529706530+intron-Distal5.101237.83372K562KHSRP
chr182969388929694001+intron-Distal,intron-Proximal3.328915.32296K562PRPF8
chr182969386429693962+intron-Distal,intron-Proximal3.130237.22523K562KHSRP
chr182967219829672284+intron-Distal,intron-Proximal3.992114.00320K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF138 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF138 is not available on ENCORE database.

  • 102 RBPs can affect the levels of RNF138.  








The Knockdown/knockout RNA-Seq assay for RNF138 is not available on ENCORE database.





102 RBPs can affect the gene expression of RNF138 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF138ENSG00000134758.9248.76180410.46360-0.722507.225606.33850HepG2ACO1
RNF138ENSG00000134758.9420.17510580.69010-0.466802.763401.97960HepG2ASCC1
RNF138ENSG00000134758.9538.22790711.54760-0.402703.759702.98170HepG2AUH
RNF138ENSG00000134758.9158.53030427.07070-1.4297012.5433010.47300HepG2BCCIP
RNF138ENSG00000134758.9257.64660371.11910-0.526502.283401.46880HepG2BCLAF1
RNF138ENSG00000134758.9262.68950478.62370-0.865508.383007.14280HepG2CALR
RNF138ENSG00000134758.9312.35140410.35540-0.393702.753102.08840HepG2CKAP4
RNF138ENSG00000134758.9198.08470436.65220-1.140406.881205.67470HepG2CNOT7
RNF138ENSG00000134758.9414.01480600.68670-0.536905.388704.54540HepG2CELF1
RNF138ENSG00000134758.9462.98290645.96660-0.480505.593004.58970HepG2DAZAP1
RNF138ENSG00000134758.9471.77250379.611300.313502.259501.50090HepG2DDX19B
RNF138ENSG00000134758.9492.46460672.28310-0.449002.710502.09010HepG2DDX3X
RNF138ENSG00000134758.9375.06360577.50120-0.622703.978503.24860HepG2DDX6
RNF138ENSG00000134758.9263.95580351.22720-0.412102.381301.72320HepG2DNAJC21
RNF138ENSG00000134758.9217.04750348.07590-0.681406.204305.28380HepG2DNAJC2
RNF138ENSG00000134758.9213.28250347.80300-0.705503.861402.54570HepG2EFTUD2
RNF138ENSG00000134758.9230.75130555.16970-1.2666014.0293012.76220HepG2EIF2S1
RNF138ENSG00000134758.9418.25240597.35370-0.514202.509601.85290HepG2EIF4B
RNF138ENSG00000134758.9550.77060403.142500.450102.816501.71230HepG2ESF1
RNF138ENSG00000134758.91024.84270816.945100.327003.395502.73920HepG2ETF1
RNF138ENSG00000134758.9369.19600574.23490-0.637304.457803.62170HepG2G3BP1
RNF138ENSG00000134758.9302.37110437.33820-0.532402.909301.86380HepG2GNB2L1
RNF138ENSG00000134758.9290.49530513.07770-0.820702.587501.96530HepG2GPKOW
RNF138ENSG00000134758.9457.26670593.62280-0.376503.130102.14360HepG2HNRNPA2B1
RNF138ENSG00000134758.9203.99390360.27190-0.820605.049803.13700HepG2HNRNPAB
RNF138ENSG00000134758.9435.67970588.45070-0.433704.337603.50670HepG2HNRNPL
RNF138ENSG00000134758.9419.77290583.69830-0.475602.894902.20720HepG2IGF2BP2
RNF138ENSG00000134758.9304.30300400.20810-0.395203.012102.24970HepG2ILF2
RNF138ENSG00000134758.9325.44950449.89110-0.467102.586901.41650HepG2LIN28B
RNF138ENSG00000134758.9440.88390622.70290-0.498102.842402.20380HepG2MATR3
RNF138ENSG00000134758.9443.27790637.37180-0.523903.338702.64480HepG2NCBP2
RNF138ENSG00000134758.9223.06170348.15500-0.642302.799101.35910HepG2NKRF
RNF138ENSG00000134758.9230.62780385.48980-0.741102.817901.71520HepG2NONO
RNF138ENSG00000134758.9280.14590529.69960-0.9190012.3984011.26230HepG2PCBP1
RNF138ENSG00000134758.9214.29920407.78530-0.928205.975504.49550HepG2PCBP2
RNF138ENSG00000134758.9401.36830538.96710-0.425303.568002.96380HepG2PTBP1
RNF138ENSG00000134758.9488.77000611.42410-0.323001.991401.47440HepG2PUF60
RNF138ENSG00000134758.9548.88890649.02730-0.241801.835401.33100HepG2PUM1
RNF138ENSG00000134758.9253.09070418.08100-0.724107.336206.41240HepG2PUS1
RNF138ENSG00000134758.9652.30010393.550600.728903.705302.89350HepG2RAVER1
RNF138ENSG00000134758.9216.01770329.50510-0.609203.519802.83490HepG2RPS19
RNF138ENSG00000134758.9330.89870476.46820-0.526003.084702.23850HepG2RPS2
RNF138ENSG00000134758.9243.47040348.92020-0.519203.665902.94310HepG2SAFB2
RNF138ENSG00000134758.9199.01450330.75140-0.732904.391803.21780HepG2SERBP1
RNF138ENSG00000134758.9762.05640531.045800.521003.045002.33720HepG2SF3A3
RNF138ENSG00000134758.9285.18560406.91640-0.512804.190703.42820HepG2SMN1
RNF138ENSG00000134758.91028.23860771.218400.414905.147304.52330HepG2SRFBP1
RNF138ENSG00000134758.9391.17110476.50690-0.284701.802501.33970HepG2SRSF9
RNF138ENSG00000134758.9457.42130669.60460-0.549806.235405.52250HepG2SSB
RNF138ENSG00000134758.9230.47370317.34740-0.461502.631001.71280HepG2SUPT6H
RNF138ENSG00000134758.9287.72810418.01170-0.538802.419501.78180HepG2SUPV3L1
RNF138ENSG00000134758.9684.71150526.430200.379202.819102.25370HepG2TAF15
RNF138ENSG00000134758.9228.29810477.07190-1.063304.937704.00950HepG2TARDBP
RNF138ENSG00000134758.9297.84470380.76380-0.354301.861601.43370HepG2TIAL1
RNF138ENSG00000134758.9180.35870384.10080-1.090609.489308.54030HepG2TRIM56
RNF138ENSG00000134758.9464.54150597.29240-0.362602.372701.56830HepG2TUFM
RNF138ENSG00000134758.9604.90580401.997100.589404.186503.42120HepG2U2AF1
RNF138ENSG00000134758.9346.13650470.95360-0.444203.538302.76420HepG2UPF1
RNF138ENSG00000134758.9355.73760484.09550-0.444502.472901.47370HepG2UTP18
RNF138ENSG00000134758.9576.76200386.949300.575702.915401.61950HepG2XRCC5
RNF138ENSG00000134758.9270.01820411.48600-0.607803.063002.30110HepG2XRN2
RNF138ENSG00000134758.9269.99380517.96280-0.9399010.238309.35320HepG2ZNF622
RNF138ENSG00000134758.9641.99780393.140100.707404.837203.07540HepG2ZRANB2
RNF138ENSG00000134758.92213.281101677.916700.399404.094002.62220K562AARS
RNF138ENSG00000134758.92136.995202492.03210-0.221702.414801.87870K562AGGF1
RNF138ENSG00000134758.91392.555902183.13960-0.6487014.2751011.31470K562BCCIP
RNF138ENSG00000134758.91577.533502361.02370-0.581703.541002.55430K562BOP1
RNF138ENSG00000134758.92267.901803231.53400-0.510902.775201.71080K562CNOT7
RNF138ENSG00000134758.93162.113303764.69710-0.251603.096601.92050K562CPEB4
RNF138ENSG00000134758.91488.071602510.53200-0.754507.811706.48450K562CPSF6
RNF138ENSG00000134758.96633.529705359.905700.307504.542103.28330K562CELF1
RNF138ENSG00000134758.93686.767102923.838000.334403.195201.61890K562DDX19B
RNF138ENSG00000134758.91163.244901970.42070-0.7603013.7912011.34190K562DDX3X
RNF138ENSG00000134758.95145.250403895.235700.401409.012007.91940K562DDX47
RNF138ENSG00000134758.91635.409001997.73120-0.288703.178801.75090K562DDX6
RNF138ENSG00000134758.93292.090902790.188700.238502.980602.06430K562DKC1
RNF138ENSG00000134758.91123.974701667.38910-0.569002.312901.47800K562EFTUD2
RNF138ENSG00000134758.91614.190502164.27360-0.423107.480605.45560K562EIF2S1
RNF138ENSG00000134758.91868.826402836.60270-0.602004.994404.06940K562EIF2S2
RNF138ENSG00000134758.91226.21530879.461600.479402.339401.42130K562EIF3A
RNF138ENSG00000134758.91410.918801853.84000-0.393904.611403.05220K562EIF4B
RNF138ENSG00000134758.91486.818601796.91520-0.273302.647401.38820K562EWSR1
RNF138ENSG00000134758.92267.411102847.10820-0.328502.965702.08620K562FIP1L1
RNF138ENSG00000134758.91495.636602554.23950-0.7721011.012109.25060K562FMR1
RNF138ENSG00000134758.91223.684602164.87570-0.823107.807606.18910K562FTO
RNF138ENSG00000134758.92542.165302140.832100.247802.858602.24520K562FXR1
RNF138ENSG00000134758.93099.610902105.002000.558202.989702.25060K562G3BP2
RNF138ENSG00000134758.91430.458702397.00940-0.744808.965507.52530K562GPKOW
RNF138ENSG00000134758.92811.105703780.47490-0.427402.434401.72340K562GRSF1
RNF138ENSG00000134758.91472.109601835.99990-0.318702.834002.23070K562HNRNPC
RNF138ENSG00000134758.91259.513701639.54050-0.380403.642202.31510K562HNRNPF
RNF138ENSG00000134758.92498.771903520.31550-0.494506.356204.69260K562HNRNPL
RNF138ENSG00000134758.93155.924802589.948700.285003.437102.44350K562HNRNPU
RNF138ENSG00000134758.91289.337401862.10120-0.530305.477603.27570K562LIN28B
RNF138ENSG00000134758.91712.524802339.71950-0.450204.651403.49470K562METAP2
RNF138ENSG00000134758.92044.643502606.73140-0.350406.161204.99450K562MTPAP
RNF138ENSG00000134758.91479.776702055.64780-0.474206.544704.68420K562NCBP2
RNF138ENSG00000134758.92325.511302896.31810-0.316707.438006.29860K562NSUN2
RNF138ENSG00000134758.91346.601901807.70250-0.424803.252601.66050K562NUSAP1
RNF138ENSG00000134758.91348.648502444.06940-0.857808.325806.59330K562PCBP2
RNF138ENSG00000134758.91392.685601792.49850-0.364103.064201.55200K562PHF6
RNF138ENSG00000134758.92477.711303231.94160-0.383403.733702.75890K562PPIG
RNF138ENSG00000134758.92076.568501622.548300.355802.209601.53560K562PRPF8
RNF138ENSG00000134758.91080.263001646.16350-0.607703.492802.45990K562PSIP1
RNF138ENSG00000134758.94134.386604957.52480-0.261903.147402.12580K562PUM2
RNF138ENSG00000134758.93357.186002571.447000.384602.399101.88580K562PUS1
RNF138ENSG00000134758.91175.588701501.89790-0.353403.447602.34530K562RCC2
RNF138ENSG00000134758.91580.078002137.99140-0.436303.233301.38620K562RECQL
RNF138ENSG00000134758.92389.232501659.397700.525802.973401.59300K562RRP9
RNF138ENSG00000134758.92220.275902857.91870-0.364205.604504.47400K562SF3A3
RNF138ENSG00000134758.91556.705502279.38920-0.550204.390103.14900K562SF3B1
RNF138ENSG00000134758.9863.690401423.76040-0.721109.508907.27420K562SRFBP1
RNF138ENSG00000134758.91904.931202615.77530-0.457503.592202.79340K562SRSF1
RNF138ENSG00000134758.91091.978501346.43780-0.302202.323601.37300K562SRSF4
RNF138ENSG00000134758.91870.788901317.002100.506307.054005.72630K562SYNCRIP
RNF138ENSG00000134758.91771.983902647.67390-0.579404.231403.35020K562TARDBP
RNF138ENSG00000134758.91896.399402553.89150-0.429403.181002.29540K562TIA1
RNF138ENSG00000134758.91045.892801682.07480-0.685509.610307.57710K562TRIM56
RNF138ENSG00000134758.94288.455805362.73110-0.322502.940201.48990K562UBE2L3
RNF138ENSG00000134758.91894.573303071.02710-0.6968022.9755021.14990K562UPF1
RNF138ENSG00000134758.92190.961302627.78160-0.262302.336301.53070K562WDR3
RNF138ENSG00000134758.93467.722602732.583100.343607.243005.93330K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF138 is not available on ENCORE database.





12 RBPs can affect the splicing of RNF138 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERNF138ENSG00000134758.9chr18+296917162969188229672625296728492970348029703537-0.203000.000010.00076excludedK562PRPF8
SERNF138ENSG00000134758.9chr18+2969166329691882296726622967284929703480297035370.408000.000000.00000includedK562AQR
SERNF138ENSG00000134758.9chr18+297034802970353729693707296938232970469629704808-0.052000.000250.00376excludedK562AQR
SERNF138ENSG00000134758.9chr18+2969171629691882296726252967284929703480297035370.100000.000060.01976includedK562HNRNPA1
SERNF138ENSG00000134758.9chr18+297034802970353729693707296938232970469629704808-0.064000.000000.00011excludedK562PUS1
SERNF138ENSG00000134758.9chr18+297066552970676329672652296728492970908129710678-0.105000.000000.00028excludedK562UTP18
SERNF138ENSG00000134758.9chr18+297066552970676329672652296728492970908129710678-0.086000.000020.00105excludedK562RBM15
SERNF138ENSG00000134758.9chr18+297066552970676329672652296728492970908129711524-0.066000.000390.01316excludedK562AGGF1
SERNF138ENSG00000134758.9chr18+296726622967284929671817296721982969171629691882-0.117000.000350.01797excludedK562SF3B1
A3SSRNF138ENSG00000134758.9chr18+2969368629693823296937072969382329691716296918820.073000.000000.00001longerK562AQR
A3SSRNF138ENSG00000134758.9chr18+297066552970676329706689297067632970469629704808-0.094000.000000.00004shorterK562U2AF1
MXERNF138ENSG00000134758.9chr18+29703480297035372970469629704808296726522967284929706655297067630.080000.000240.006721includedK562PUS1
MXERNF138ENSG00000134758.9chr18+2969171629691882297066552970676329672662296728492970908129711524-0.163000.000000.000132includedK562PUS1
MXERNF138ENSG00000134758.9chr18+2970348029703537297046962970480829672652296728492970665529706763-0.072000.000010.003072includedK562HNRNPA1
MXERNF138ENSG00000134758.9chr18+29693686296938232970345029703537296917162969188229706655297067630.679000.009430.060391includedK562AQR
MXERNF138ENSG00000134758.9chr18+29703480297035372970665529706763296726522967284929709081297106780.054000.005660.093991includedK562TARDBP
MXERNF138ENSG00000134758.9chr18+29703480297035372970469629704808296726522967284929706655297067630.069000.000160.016051includedK562HNRNPK
MXERNF138ENSG00000134758.9chr18+29703480297035372970469629704808296726522967284929706655297067630.103000.000020.000921includedK562PRPF8
MXERNF138ENSG00000134758.9chr18+29691716296918822970469629704808296726622967284929706655297067630.101000.004880.061971includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNF138 is not avaliable on ENCORE database.